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Recent Publications |
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To request a paper (pdf) please contact:
Anett Pechstein
email: pechstn eva.mpg.de
phone: +49 (0) 341 35 50 504
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| 2012 |
| Delfin, F., S. Myles, Y. Choi, D. Hughes, R. Illek, M. van Oven, B. Pakendorf, M. Kayser, and M. Stoneking. 2012. Bridging Near and Remote Oceania: mtDNA and NRY variation in the Solomon Islands. Molecular Biology and Evolution 29:545-564. |
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| 2011 |
| Delfin, F., J.M. Salvador, G.C. Calcal, H.B. Perdigon, K.A. Tabbada, L.P. Villamor, S.C. Halos, E. Gunnarsdottir, S. Myles, D.A. Hughes, S. Xu, L. Jin, O. Lao, M. Kayser, M. Hurles, M. Stoneking, and M.C.A. De Ungria. 2011. The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups. European Journal of Human Genetics 19:224-230. |
| de Filippo, C., C. Barbieri, M. Whitten, S.W. Mpoloka, E.D.
Gunnarsdottir, K. Bostoen, T. Nyambe, K. Beyer, H. Schreiber, P. de
Knijff, D. Luiselli, M. Stoneking, and B. Pakendorf. 2011.
Y-chromosomal variation in sub-Saharan Africa: insights into the history
of Niger-Congo groups. Molecular Biology and Evolution 28:1255-1269. |
| Gross, A., A. Tönjes, P. Kovacs, K. R. Veeramah, P. Ahnert, N. R. Roshyara, C. Gieger, I. Rueckert, M. Loeffler, M. Stoneking, H. Wichmann, J. Novembre, M. Stumvoll, and M. Scholz. 2011. Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays. BMC Genetics 12:67. |
| Grossman, T., M.H. Johnson, A. Vaish, D.A. Hughes, D. Quinque, M. Stoneking, and A.D. Friederici. 2011. Genetic and neural dissociation of individual responses to emotional expressions in human infants. Developmental Cognitive Neuroscience 1:57-66. |
| Gunnarsdóttir, E.D., M. R. Nandineni, M. Li, S. Myles, D. Gil, B.Pakendorf, and M. Stoneking. 2011. Larger mtDNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications 2:228. |
| Gunnarsdottir, E.D., M. Li, M. Bauchet, K. Finstermeier, and M. Stoneking. 2011. High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research 21:1-11. |
| Li, J., L. Zhang, H. Zhou, M. Stoneking, and K. Tang. 2011. Global patterns of genetic diversity and signals of natural selection for human drug metabolizing enzyme and transporter genes. Human Molecular Genetics 20:528-540. |
| Myles, S., R.A. Lea, J. Ohashi, G.K. Chambers, J.G. Weiss, E. Hardouin, J. Engelken, D.P. Macartney-Coxson, D.A. Eccles, I. Naka, R. Kimura, T.a Inaoka, Y. Matsumura, and M. Stoneking. 2011. Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans. BMC Medical Genetics 12:10. |
| Nasidze I, Li J, Schroeder R, Creasey JL, Li M, Stoneking M. (2011) High Diversity of the Saliva Microbiome in Batwa Pygmies. PLoS ONE 6(8): e23352. |
| Nasidze, I. and Stoneking, M. (2011) Microbiome diversity in saliva. In: Handbook of Molecular Microbial Ecology, Volume II: Metagenomics in Different Habitats, First Edition. Editide by Frans J. de Bruijn. pp. 335-339. Wiley-Blackwell. Published 2011 by John Wiley & Sons, Inc. |
| Pugach, I., R. Matveyev, A. Wollstein, M. Kayser, and M. Stoneking. 2011. Wavelet transform analysis of the admixture signal in genome-wide data. Genome Biology 12:R19. |
| Reich, D., N. Patterson, M. Kircher, F. Delfin, M.R. Nandineni, I. Pugach, A.M. Ko, Y.C. Ko, T.A. Jinam, M.E. Phipps, N. Saitou, A. Wollstein, M. Kayser, S. Pääbo, and M. Stoneking. 2011. Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. American Journal of Human Genetics 89:516-528. |
| Schönberg A, Theunert C, Li M, Stoneking M, Nasidze I. (2011) High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: high diversity and demographic inferences. Eur J Hum Genet. 2011 Sep;19(9):988-994. |
| Stoneking, M. and J. Krause. 2011. Learning about human population history from ancient and modern genomes. Nature Reviews Genetics 12: 603-614. |
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| 2010 |
| Athanasiadis, G., E. Esteban, M. Gaya-Vidal, J.M. Dugoujon, N. Moschonas, H. Chaabani, N. Bissar-Tadmouri, N. Harich, M. Stoneking, and P. Moral. 2010.
Different evolutionary histories of coagulation factor VII gene in human populations? Annals of Human Genetics 74:34-45 |
| Athanasiadis, G., E. Gonzalez-Perez, E. Esteban, J.M. Dugoujon, M. Stoneking, and P. Moral. 2010. The Mediterranean Sea as a barrier to gene flow: evidence from variation in and around the F7 and F12 genomic regions. BMC Evolutionary Biology 10:84. |
| de Filippo C, Heyn P, Barham L, Stoneking M, Pakendorf B. Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia. Am J Phys
Anthropol. 2010 Mar;141(3):382-94. |
| Li, M., A. Schönberg, M. Schaefer, R. Schroeder, I. Nasidze, and M. Stoneking. 2010. Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. American Journal of Human Genetics 87:237-249. |
| Reich, D., R.E. Green, M. Kircher, J. Krause, N. Patterson, E.Y. Durand, B. Viola, A.W. Briggs, U. Stenzel, P.L.F. Johnson, T. Maricic, J.M. Good, T. Marques-Bonet, C. Alkan, Q. Fu, S. Mallick, H. Li, M. Meyer, E.E. Eichler, M. Stoneking, M.Richards, S. Talamo, M.V. Shunkov, A.P. Derevianko, J.J. Hublin, J. Kelso, M. Slatkin, and S. Pääbo. 2010. Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature 468:1053-1060. |
| Stoneking, M. and F. Delfin. 2010. The human genetic history of East Asia: weaving a complex tapestry. Current Biology 20:R188-R193. |
| Wollstein, A., O. Lao, C. Becker, S. Brauer, R.J. Trent, P. Nürnberg, M. Stoneking, and M. Kayser. 2010. Demographic history of Oceania inferred from genome-wide data. Current Biology 20:1983-1992. |
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| 2009 |
| Balaresque P., Parkin E.J., Roewer L., Carvalho-Silva D.R., Mitchell R.J., van Oorschot R.A.H., Henke J., Stoneking M., Nasidze I., Wetton J., de Knijff P., Tyler-Smith C., Jobling M.A. (2009) Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. International Journal of Legal Medicine. 123:15-23. |
| Herraez, D.L., M. Bauchet, K. Tang, C. Theunert, I. Pugach, J. Li, M.R. Nandineni, A. Gross, M. Scholz, and M. Stoneking. 2009. Genetic variation and recent positive selection in worldwide human populations: evidence from nearly 1 million SNPs. PLoS ONE 4:e7888 |
| Hillmer, A.M., J. Freudenberg, S. Myles, S. Herms, K. Tang, D.A. Hughes, F.F. Brockschmidt, Y. Ruan, M. Stoneking, and M.M. Nöthen. 2009. Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Human Genetics 126:255-264 |
| Hughes, D.A., M. Jastroch, M. Stoneking, and M. Klingenspor. 2009. Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis. BMC Evolutionary Biology 9:4 |
| Hughes, D.A., A. Hinney, H. Brumm, A.K. Wermter, H. Biebermann, J. Hebebrand, and M. Stoneking. 2009. Increased constraints on MC4R during primate and human evolution. Human Genetics 124:633-647. |
| Mona, S., K.E. Grunz, S. Brauer, B. Pakendorf, L. Castri, H. Sudoyo, S. Marzuki, R.H. Barnes, J. Schmidtke, M. Stoneking, and M. Kayser. 2009. Genetic admixture history of eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Molecular Biology and Evolution 26:1865-1877 |
| Moreno-Estrada, A., K. Tang, M. Sikora, T. Marquès-Bonet, F. Casals, A. Navarro, F. Calafell, J. Bertranpetit, M. Stoneking, and E. Bosch. 2009. Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution 26:2285-2297 |
| Myles, S., M. Stoneking, and N. Timpson. 2009. An assessment of the portability of ancestry informative markers between human populations. BMC Medical Genomics 2:45 |
| Nasidze I., Li J., Quinque D., Tang K., and Stoneking M. (2009) Global Diversity in the Human Salivary Microbiome. Genome Research. 19:636-643. |
| Nasidze I., Quinque D., Li J., Li M., Tang K., and Stoneking M. (2009) Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches. Analytical Biochemistry. 391: 64–68. |
| Nasidze I., Quinque D., Rahmani M.,Ali Alemohamad S., Asadova P., Zhukova O., and Stoneking M. (2009) MtDNA and Y-chromosome Variation in the Talysh of Iran and Azerbaijan. American Journal of Physical Anthropology. 138: 82-89. |
| Roewer L., Willuweit S., Stoneking M., Nasidze I. (2009) A Y-STR database of Iranian and Azerbaijanian minority populations. Forensic Science
International: Genetics. 4:e53–e55. |
| Ryan, A.W., D. Hughes, K. Tang, D. Kelleher, T. Ryan, R. McManus, and M. Stoneking. 2009. Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus. European Journal of Human Genetics 17:219-227. |
| Stoneking, M. 2009. Humans as second orangutans: sense or nonsense? BioEssays 31:1010-1012. |
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| 2008 |
Balaresque P., Bowden G.R., Parkin E.J., Omran G.A., Heyer E., Quintana-Murci L., Roewer L., Stoneking ., Nasidze I., Carvalho-Silva D.R., Tyler-Smith C., de Knijff P., Jobling M.A. (2008) Dynamic nature of the proximal /AZFc /region of the human Y chromosome: multiple independent deletion and duplication events revealed by
microsatellite analysis. Human mutation. 29:1171-1180. |
| Bryk, J., E. Hardouin, I. Pugach, D. Hughes, R. Strotmann, M. Stoneking, and S. Myles. 2008. Positive selection in East Asians for an EDAR allele that enhances NF-?B activation. PLoS ONE 3:e2209. |
| Fechner A., Quinque D., Rychkov S., Morozowa I., Naumova O., Schneider Y., Willuweit S., Zhukova O., Roewer L., Stoneking M., Nasidze I. (2008) Boundaries and clines in the West Eurasian Y-chromosome landscape: Insights from the European part of Russia. American Journal of Physical Anthropology. 137: 41-47. |
| Güldemann, T. and M. Stoneking. 2008. A historical appraisal of clicks: a linguistic and genetic population perspective. Annual Review of Anthropology 37:93-109 |
| Herráez, D.L. and M. Stoneking. 2008. High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping. Analytical Biochemistry 383:329-331. |
| Hughes, D.A., K. Tang, R. Strotmann, T. Schöneberg, J. Prenen, B. Nilius, and M. Stoneking. 2008. Parallel soft sweeps on TRPV6 in human populations. PLoS ONE 3: e1686. |
Kayser, M., Y. Choi, M. van Oven, S. Mona, S. Brauer, D. Suarkia, W. Schiefenhövel, and M. Stoneking. 2008. The impact of the Austronesian expansion: evidence from mtDNA and Y-chromosome diversity in the Admiralty Islands of Melanesia. Molecular Biology and Evolution 25:1362-1374. |
| Kayser, M., O. Lao, and M. Stoneking. 2008. Reply to Hedrick. American Journal of Human Genetics 83: 140-142. |
| Kayser, M., O. Lao, K. Saar, S. Brauer, X. Wang, P. Nürenberg, R.J. Trent, and M. Stoneking. 2008. Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. American Journal of Human Genetics 82:194-198. |
| Klingenspor, M. T. Fromme, D. A. Hughes, L. Manzke, E. Polymeropoulos, T. Riemann, M. Trzcionka, V. Hirschberg, and M. Jastroch. 2008. An ancient look at UCP1. Biochimica et Biophysica Acta 1777:637-641 |
| Mehlotra, R.K., G. Mattera, M.J. Bockarie, J.D. Maguire, J.K. Baird, Y.D. Sharma, M. Alifrangis, G. Dorsey, P.J. Rosenthal, D.J. Fryauff, J.W. Kazura, M. Stoneking, and P.A. Zimmerman. 2008. Discordant patterns of genetic variation at two chloroquine-resistant loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy 52:2212-2222. |
| Myles S., D. Davison, J. Barrett, M. Stoneking, and N. Timpson. 2008. Worldwide population differentiation at disease-associated SNPs. BMC Medical Genomics 1:22. |
| Myles, S., K. Tang, M. Somel, R.E. Green, J. Kelso, and M. Stoneking. 2008. Identification and analysis of genomic regions with large between-population differentiation in humans. Annals Human Genetics 72:99-110. |
Nasidze I, Quinque D., Rahmani M.,Ali Alemohamad S., Stoneking M. (2008) Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Annals of Human Genetics. 72: 241-252. [mtDNA sequences in text format] |
| Roewer L., Willuweit S., Krüger C., Nagy M., Rychkov S., Morozowa I., Naumova O., Schneider Y., Zhukova O., Stoneking M., Nasidze I. (2008) Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. International Journal of Legal Medicine. 122:219–223. |
| Stoneking, M. 2008. Human origins: the molecular perspective. EMBO Reports 9:S46-S50. |
| Stoneking, M. 2008. Mitochondrial genome: evolution. In: Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, Chichester, http://www.els.net/ [DOI: 10.1002/9780470015902.a0005074.pub2]. |
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| 2007 |
| Cordaux, R., D. Srikanta, J. Lee, M. Stoneking, and M.A. Batzer. 2007. In search of polymorphic Alu insertions with restricted geographic distributions. Genomics 90:154-158. |
| DaRe, J.T., R.K. Mehlotra, P. Michon, I. Mueller, J. Reeder, Y.D. Sharma, M. Stoneking, and P.A. Zimmerman. 2007. Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea. Malaria Journal 6:34. |
| Kuch, M., D.R. Gröcke, M.C. Knyf, T.M.P. Gilbert, B. Younghusband, T. Young, I. Marshall, M. Stoneking, and H. Poinar. 2007. A preliminary analysis of the DNA and diet of the extinct Beothuk: a systematic approach to ancient human DNA. American Journal of Physical Anthropology 132:594-604. |
| Lalueza-Fox, C., H. Römpler, D. Carmelli, C. Stäubert, G. Catalano, D. Hughes, N. Rohland, E. Pilli, L. Longo, S. Condemi, M. de la Rasilla, J. Fortea, A. Rosas, M. Stoneking, T. Schöneberg, J. Bertranpetit, and M. Hofreiter. 2007. A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science 318:1453-1455. |
| Myles, S., E. Hradetzky, J. Engelken, O. Lao, P. Nürnberg, R. J. Trent, X. Wang, M. Kayser, and M. Stoneking. 2007. Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians. European Journal of Human Genetics 15:584-589 |
| Myles, S., M. Somel, K. Tang, J. Kelso, and M. Stoneking. 2007. Identifying genes underlying skin pigmentation differences among human populations. Human Genetics 120:613-621. |
Nasidze I., Quinque D., Udina I., Kunizhevu S., Stoneking M. (2007) The Gagauz, a linguistic enclave, are not a genetic isolate. Annals of Human Genetics. 71: 379–389.
[mtDNA sequences in text format) |
| Pakendorf, B.; Novgorodov, I.N.; Osakovskij, V.L.; Stoneking, M. (2007): Mating patterns amongst Siberian reindeer herders: inferences from mtDNA and Y-chromosomal analyses. AJPA. 133: 1013-1027. mtDNA sequences (text file), Y-STR haplotypes (xls file) |
| Roewer L., Krüger C., Willuweit S., Nagy M., Rodig H., Kokshunova L., Rothämel T., Kravchenko S., Jobling M., Stoneking M., Nasidze I. (2007) Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Science International. 173: 204-209. |
| Rootsi, S., L.A. Zhivotovsky, M. Baldovic, M. Kayser, I.A. Kutuev, R. Khusainova, M.A. Bermisheva, M. Gubina, S. Fedorova, A.M. Ilumäe, E.K. Khusnutdinova, L.P. Osipova, M. Stoneking, V. Ferak, J. Parik, T. Kivisild, P.A. Underhill, and R. Villems. 2007. A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. European Journal of Human Genetics 15:204-211. |
| Stoneking, M. and M. Kayser. 2007. Genealogical markers: mtDNA and the Y-chromosome. In: Genetic Variation: A Laboratory Manual, M. P. Weiner, S. B. Gabriel, J.C. Stephens (eds.), Cold Spring Harbor Laboratory Press, New York, pp. 421-436. |
| Stoneking, M. and I. Nasidze. (2007) Reply to Parson. Annals Human Genetics 71: 279-280. Supplemental material (pdf) |
| Tang, K., K.R. Thornton, and M. Stoneking. 2007. A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biology 5:e171 |
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| 2006 |
| Hammer, M.F., T. M. Karafet, H. Park, K. Omoto, S. Harihara, M. Stoneking and S. Horai. 2006. Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics 51:47-58 |
| Kayser, M., S. Brauer, R. Cordaux, A. Casto, O. Lao, L.A. Zhivotovsky, C. Moyse-Faurie, R.B. Rutledge, W. Schiefenhoevel, D. Gil, A.A. Lin, P.A. Underhill, P.J. Oefner, R.J. Trent, and M. Stoneking. 2006. Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution 23:2234-2244 |
Nasidze I., Stoneking M. (2006) Mother tongue: Concomitant replacement of language and mtDNA in South Caspian populations of Iran. In: The Evolution of Language. Eds. A.Cangelosi, A.D.M.Smith and K.Smith. pp. 432-433. World Scientific Co. Pte. Ltd. New Jersey, London, Singapore, Peijing, Shanghai, Hong Kong, Taipei, Chennai. |
| Nasidze I, Quinque D, Rahmani M, Alemohamad SA, Stoneking M (2006) Concomitant replacement of language and mtDNA in South Caspian populations of Iran. Current Biology. 16: 668-673. MtDNA HVI sequences in the text format |
| Pakendorf, B.; Novgorodov, I.N.; Osakovskij, V.L.; Danilova, A.P.; Protod’jakonov, A.P.; Stoneking, M. (2006): Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Human Genetics 120/3: 334-353. Sequences (txt files) | Supplementary material MtDNA (doc file) | supplementary material Y-chr (Excel) | Online-Abstract: http://dx.doi.org/10.1007/s00439-006-0213-2 |
| Stoneking, M. 2006. Genetic evidence for our recent African ancestry. In: The Prehistory of Africa, H. Soodyall (ed.), Jonathan Ball Publishers, Johannesburg, South Africa, pp. 24-36 |
| Stoneking, M. 2006. Investigating the health of our ancestors: insights from the evolutionary genetic consequences of prehistoric diseases. In: Integrative Approaches to Human Health and Evolution, T.G. Bromage, A. Vidal, E. Aguirre and A. Perez-Ochoa (eds.), Elsevier B. V., Amsterdam, pp.106-114. |
| Stoneking M, Nasidze I. (2006) The patient is not dead yet: premature autopsy of an mtDNA data set. Annals of Human Genetics. 70: 327-331. |
Quinque D, Kittler R, Kayser M, Stoneking M, Nasidze I. (2006) Evaluation of saliva as a source of human DNA for population and association studies. Analytical Biochemistry. 353: 272-277.
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| 2005 |
| Hamilton, G., M. Stoneking, and L. Excoffier. 2005. Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences USA 102:7476-7480. |
| Mehlotra, R.K., G. Mattera, K. Bhatia, J.C. Reeder, M. Stoneking, and P.A. Zimmerman. 2005. Insight into the early spread of chloroquine resistant Plasmodium falciparum in Papua New Guinea. Journal of Infectious Diseases192:2174-2179 |
Nasidze I, Quinque D, Dupanloup I, Cordaux R, Kokshunova L, Stoneking M. (2005) Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology. DOI: 10.1002/ajpa.20159 (on-line publication).
MtDNA sequences in text format |
Nasidze I, Quinque D, Ozturk M, Bendukidze N, Stoneking M. (2005)
MtDNA and Y-chromosome variation in Kurdish groups. Annals of Human
Genetics. 69: 401-412.
MtDNA sequences (txt file) |
| Oota, H., B. Pakendorf, G. Weiss, A. von Haeseler,
S. Pookajorn, W. Settheetham-Ishida, D. Tiwawech, T.
Ishida, and M. Stoneking. 2005. Recent Origin and Cultural Reversion of a Hunter–Gatherer Group. PLoS Biology
3:536-542 |
| Pakendorf, B. and M. Stoneking. 2005. Mitochondrial DNA and human evolution. Annual Review of Genomics and Human Genetics 6:165-183 |
| Stoneking, M. 2005. Gene, geographie und Sprache. In: Gene, Sprachen und ihre Evolution, G. Hauska (ed.), Unversitätsverlag Regensburg GmbH, Regensburg, Germany, pp. 133-140 |
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| 2004 |
| Cordaux, R., R. Aunger, G. Bentley, I. Nasidze, S.
M. Sirajuddin, and M. Stoneking. 2004. Independent
origins of Indian caste and tribal paternal lineages.
Current Biology 14:231-235. |
| Cordaux, R., G. Bentley, R. Aunger, S. M. Sirajuddin,
and M. Stoneking. 2004. Y-STR haplotypes from eight
south Indian groups based on five loci. Journal of
Forensic Sciences 49:847-848. |
| Cordaux, R., E. Deepa, H. Vishwanathan, and M. Stoneking.
2004. Genetic evidence for the demic diffusion of agriculture
to India. Science 304:1125. |
| Cordaux, R., G. Weiss, N. Saha, and M. Stoneking.
2004. The northeast Indian passageway: a barrier or
corridor for human migrations? Molecular Biology and
Evolution 21:1525-1533. |
| Erler, A., M. Stoneking, and M. Kayser. 2004. Development
of Y-chromosomal microsatellite markers for non-human
primates. Molecular Ecology 13:2921-2930. |
| Hughes, D.A., R. Cordaux, and M. Stoneking. 2004.
Quick guide: humans. Current Biology 14:R367-R369. |
| Kasperaviciute, D., V. Kucinskas, and M. Stoneking.
2004. Y chromosome and mitochondrial DNA variation
in Lithuanians. Annals Human Genetics 68:438-452. |
| Kayser, M., R. Kittler, A. Erler, M. Hedman, A.C.
Lee, A. Mohyuddin, S. Q. Mehdi, Z. Rosser, M. Stoneking,
M. A. Jobling, A. Sajantila and C. Tyler-Smith. 2004.
A comprehensive survey of human Y-chromosomal microsatellites.
American Journal of Human Genetics 74:1183-1197. |
| Nasidze, I., E. Y.S. Ling, D. Quinque, I. Dupanloup,
R. Cordaux, S. Rychkov, O. Naumova, O. Zhukova, N.
Sarraf-Zadegan, G. A. Naderi, S. Asgary, S. Sardas,
D. D. Farhud, T. Sarkisian, C. Asadov, A. Kerimov,
and M. Stoneking. 2004. Mitochondrial DNA and Y-chromosome
variation in the Caucasus. Annals Human Genetics 68(3):205-221. MtDNA sequences (txt file) |
| Nasidze I, Quinque D, Dupanloup I, Rychkov S, Naumova O, Zhukova O, Stoneking M. (2004) Genetic evidence concerning the origins of South and North Ossetians. Annals of Human Genetics. 68: 588-599. MtDNA sequences in text format |
| Vishwanathan, H., E. Deepa, R. Cordaux, M. Stoneking,
M. V. Usha Rani, and P. P. Majumder. 2004. Genetic
structure and affinities among tribal populations of
southern India: a study of 24 autosomal DNA markers.
Annals Human Genetics 68:128-138. |
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| 2003 |
| Cordaux, R., N. Saha, G. R. Bentley, R. Aunger, S.
M. Sirajuddin, and M. Stoneking. 2003. Mitochondrial
DNA analysis reveals diverse histories of tribal populations
of India. European Journal of Human Genetics 11:253-264. MtDNA sequences (txt-file) |
| Cordaux, R. and M. Stoneking. 2003. South Asia, the
Andamanese and the genetic evidence for an “early” human
dispersal out of Africa. American Journal of Human
Genetics 72:1586-1590. |
| Kayser, M., S. Brauer, H. Schädlich, M. Prinz,
M. A. Batzer, P. A. Zimmerman, B. A. Boatin, and M.
Stoneking. 2003. Y chromosome STR haplotypes and the
genetic structure of U.S. populations of African, European,
and Hispanic ancestry. Genome Research 13:624-634. |
| Kayser, M., S. Brauer and M. Stoneking. 2003. A genome
scan to detect candidate regions influenced by local
natural selection in human populations. Molecular Biology
and Evolution 20:893-900. |
| Kayser, M., S. Brauer, G. Weiss, W. Schiefenhövel,
P. Underhill, P. Shen, P. Oefner, M. Tommaseo-Ponzetta,
and M. Stoneking. 2003. Reduced Y-chromosome, but not
mtDNA, diversity in human populations from West New
Guinea. American Journal of Human Genetics 72:281-302. |
| Kittler, R., A. Erler, S. Brauer, M. Stoneking, and
M. Kayser. 2003. Apparent intra-chromosomal exchange
on the human Y chromosome explained by population history.
European Journal of Human Genetics 11:304-314. |
| Kittler, R., M. Kayser and M. Stoneking: Molecular
Evolution of Pediculus humanus and the origin of
clothing. Current Biology 13, 1414-1417 (2003). erratum (pdf) |
| Nasidze, I., T. Sarkisian, A. Kerimov, and M. Stoneking.
2003. Testing hypotheses of language replacement in
the Caucasus: evidence from the Y-chromosome. Human
Genetics 112:255-261. |
| Nasidze, I., H. Schädlich, and M. Stoneking.
2003. Haplotypes from the Caucasus, Turkey and Iran
for nine Y-STR loci. Forensic Science International
137:85-93. |
| Pakendorf, B., V. Wiebe, L. A. Tarskaia, V. A. Spitsyn,
H. Soodyall, A. Rodewald, and M. Stoneking. 2003. Mitochondrial
DNA evidence for admixed origins of central Siberian
populations. American Journal of Physical Anthropology
120:211-224. |
| Stoneking, M. 2003. Mitochondrial genome: evolution.
In: Nature Encyclopedia of the Human Genome, D. Cooper
(ed.), Nature Publishing Group, London, pp.1019-1023. |
| Stoneking, M. 2003. Widespread prehistoric human
cannibalism: easier to swallow? Trends in Ecology and
Evolution 18:489-490. |
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| 2002 |
| Kayser, M., S. Brauer, S. Willuweit, H. Schädlich,
M. A. Batzer, J. Zawacki, M. Prinz, L. Roewer, and
M. Stoneking. 2002. Online Y-chromosomal short tandem
repeat haplotype reference database (YHRD) for U.S.
populations. Journal of Forensic Sciences 47:513-519. |
| Kittler, R., M. Stoneking, and M. Kayser. 2002. A
whole genome amplification method to generate long
fragments from low quantities of genomic DNA. Analytical
Biochemistry 300:237-244. |
| Nasidze, I. and M. Stoneking. 2002. Genetic variation
among human populations from the Caucasus. In: The
First Workshop on Information Techologies Application
to Problems of Biodiversity and Dynamics, V.K.Shumny,
N.A.Kolchanov, and A.M.Fedotov (Eds.), Russian Academy
of Sciences, Novosibirsk, Russia, pp.272-278. |
| Oota, H., T. Kitano, F. Jin, I. Yuasa, L. Wang, S.
Ueda, N. Saitou, and M. Stoneking. 2002. Extreme mtDNA
homogeneity in continental Asian populations. American
Journal of Physical Anthropology 118:146-153. |
| Pakendorf, B., B. Morar, L. A. Tarskaia, M. Kayser,
H. Soodyall, A. Rodewald, and M. Stoneking. 2002. Y-chromosomal
evidence for a severe reduction in male population
size of Yakuts. Human Genetics 110:198-200. |
| Romauldi, C., D. Balding, I. S. Nasidze, G. Risch,
M. Robichaux, S. Sherry, M. Stoneking, M. A. Batzer,
and G. Barbujani. 2002. Patterns of human diversity,
within and among continents, inferred from biallelic
DNA polymorphisms. Genome Research 12:602-612. |
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| 2001 |
| Begovich, A. B., P. V. Moonsamy, S. J. Mack, L. F.
Barcellos, L. L. Steiner, S. Grams, V. Suraj-Baker,
J. Hollenbach, E. Trachtenberg, L. Louie, P. Zimmerman,
A. V. S. Hill, M. Stoneking, T. Sasazuki, V. I. Konenkov,
M. L. Sartakova, V. P. K. Titanji, O. Rickards, and
W. Klitz. 2001. Genetic variability and linkage disequilibrium
within the DP region: analysis of 15 different populations.
Tissue Antigens 57:424-439. |
| Justice, C. M., Z. Den, S. V. Nguyen, M. Stoneking,
P. L. Deininger, M. A. Batzer, and B. J. B. Keats.
2001. Phylogenetic analysis of the Friedreich ataxia
GAA trinucleotide repeat. Journal of Molecular Evolution
52:232-238. |
| Kayser, M., S. Brauer, G. Weiss, W. Schiefenhövel,
P. A. Underhill, and M. Stoneking. 2001. Independent
histories of human Y chromosomes from Melanesia and
Australia. American Journal of Human Genetics 68:173-190. |
| Melton, T., S. Clifford, M. Kayser, I. Nasidze, M.
Batzer, and M. Stoneking. 2001. Diversity and heterogeneity
in mitochondrial DNA of North American populations.
Journal of Forensic Sciences 46:46-52. |
| Nasidze, I., G. M. Risch, M. Robichaux, S. T. Sherry,
M. A. Batzer, and M. Stoneking. 2001. Alu insertion
polymorphisms and the genetic structure of human populations
from the Caucasus. European Journal of Human Genetics
9:267-272. |
| Nasidze, I. and M. Stoneking. 2001. Mitochondrial
DNA variation and language replacements in the Caucasus.
Proceedings Royal Society London B 268:1197-1206. |
| Oota, H., W. Settheetham-Ishida, D. Tiwawech, T.
Ishida, and M. Stoneking. 2001. Human mtDNA and Y-chromosome
variation is correlated with matrilocal vs. patrilocal
residence. Nature Genetics 29:20-21. |
| Stone, A. C., J. E. Starrs, and M. Stoneking. 2001.
Mitochondrial DNA analysis of the presumptive remains
of Jesse James. Journal of Forensic Sciences 46:173-176. |
| Stoneking, M. 2001. Single nucleotide polymorphisms:
from the evolutionary past... Nature 409:821-822. |
| Stoneking, M., P. L. Deininger, and M. A. Batzer.
2001. Alu insertion polymorphisms in humans: a review.
In Genes, Fossils and Behaviour, P. Donnelly and R.
Foley (eds.), IOS Press, Amsterdam, The Netherlands,
pp.111-121. |
| Tishkoff, S. A., R. Varkonyi, N. Cahinhinan, S. Abbes,
G. Argyropoulos, G. Destro-Bisol, A. Drousiotou, B.
Dangerfield, G. Lefranc, J. Loiselet, A. Piro, M. Stoneking,
A. Tagarelli, G. Tagarelli, E. H. Touma, S. M. Williams,
and A. G. Clark. 2001. Haplotype diversity and linkage
disequilibrium at human G6PD: recent origin of alleles
that confer malarial resistance. Science 293:455-462. |
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| 2000 |
| Begovich. A.B., W. Klitz, L.L. Steiner, S. Grams,
V. Suraj-Baker, J. Hollenbach, E. Trachtenberg, L.
Louie, P.A. Zimmerman, A.V.S. Hill, M. Stoneking, T.
Sasazuki, O. Rickards, V.P.K. Titanji, V.I. Konenkov,
M.L. Sartakova. 2000. HLA-DQ haplotypes in 15 different
populations. In The Major Histocompatibility Complex:
Evolution, Structure and Function, M Kasahara (Ed.),
Springer, New York, NY, pp.412-426. |
| Clark, V. J., S. Sivendren, N. Saha, G. R. Bentley,
R. Aunger, S. M. Sirajuddin, and M. Stoneking. 2000.
The 9-bp deletion between the mitochondrial lysine
tRNA and COII genes in tribal populations of India.
Human Biology 72:273-285. |
| Comas, D., F. Calafell F, N. Benchemsi, A. Helal,
G. Lefranc, M. Stoneking, M. Batzer, J. Bertranpetit,
and A. Sajantila. 2000. Alu insertion polymorphisms
in Northwest Africa and the Iberian Peninsula: evidence
for a strong genetic boundary through the Gibraltar
Straits. Human Genetics 107:312-319. |
| Di Benedetto, G., I. S. Nasidze, M. Stenico, L. Nigro,
M. Krings, M. Lanzinger, L. Vigilant, M. Stoneking,
S. Pääbo, and G. Barbujani. 2000. Mitochondrial
DNA sequences in prehistoric human remains from the
Alps. European Journal of Human Genetics 8:669-677. |
| Kayser, M., L. Roewer, M. Hedman, L. Henke, J. Henke,
S. Brauer, C. Kruger, M. Krawczak, M. Nagy, T. Dobosz,
R. Szibor, P. de Knijff, M. Stoneking, and A. Sajantila.
2000. Characteristics and frequency of germline mutations
at microsatellite loci from the human Y chromosome
revealed by direct observation in father/son pairs.
American Journal of Human Genetics 66:1580-1588. |
| Kayser, M., S. Brauer, G. Weiss, P. A. Underhill,
L. Roewer, W. Schiefenhövel, and M. Stoneking.
2000. Melanesian origin of Polynesian Y chromosomes.
Current Biology 10:1237-1246 [Correction:
Current Biology 11:I-II, 2001]. |
| Kumar, S., P. W. Hedrick, T. Dowling, and M. Stoneking.
2000. Questioning evidence for recombination in human
mitochondrial DNA. Science 288:1931a. |
| Kumar, S. S., I. Nasidze, S. R. Walimbe, and M. Stoneking.
2000. Discouraging prospects for ancient DNA from India.
American Journal of Physical Anthropology 113:129-133. |
| Mack, S. J., T. L. Bugawan, P. V. Moonsamy, J. A.
Erlich, E. A. Trachtenberg, Y. K. Paik, A. B. Begovich,
N. Saha, H. P. Beck, M. Stoneking, and H. A. Erlich.
2000. Evolution of Pacific/Asian populations inferred
from HLA class II allele frequency distributions. Tissue
Antigens 55:383-400. |
| Sheen, F., S. T. Sherry, G. M. Risch, M. Robichaux,
I. Nasidze, M. Stoneking, M. A. Batzer, and G. D. Swergold.
2000. Reading between the LINEs: human genomic variation
induced by LINE-1 retrotransposition. Genome Research
10:1496-1508. |
| Stoneking, M. 2000. Hypervariable sites in the mtDNA
control region are mutational hotspots. American Journal
of Human Genetics 67:1029-1032. |
| Tishkoff, S. A., A. J. Pakstis, M. Stoneking, J.
R. Kidd, G. Destro-Bisol, A. Sajantila, A. S. Deinard,
G. Sirugo, T. Jenkins, K. K. Kidd, and A. G. Clark.
2000. Short tandem-repeat polymorphism/Alu haplotype
variation at the PLAT locus: implications for modern
human origins. American Journal of Human Genetics 67:901-925. |
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