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Recent Publications

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Anett Pechstein
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2014

Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology, 153(3), 435-448. doi: 10.1002/ajpa.22441
Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One, 9(6): e9911. doi: 10.1371/journal.pone.0099117
Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics, 22(2), 228-237. doi: 10.1038/ejhg.2013.122
Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development, 29, 9-14. doi: 10.1016/j.gde.2014.06.010
Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics, 94(5), 721-733. doi: 10.1016/j.ajhg.2014.03.014
Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics, 10(2): e1004128. doi: 10.1371/journal.pgen.1004128
Francioli, L. C., Menelaou, A., Pulit, S. L., van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., van Leeuwen, E. M., van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E.-W., Kattenberg, M., Dijkstra, M., Byelas, H., van Setten, J., van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marschall, T., Schönhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., van Enckevort, D., Mei, H., Koval, V., Moed, M. H., van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekman, M., de Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Study, L. C., Platteel, M., Veldink, J. H., van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., den Dunnen, J. T., Stoneking, M., de Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Pe'er, I., Slagboom, P. E., van Duijn, C. M., Boomsma, D. I., van Ommen, G.-J.-B., de Bakker, P. I. W., Swertz, M. A., Wijmenga, C., & Genome of the Netherlands Consortium, The (2014). Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nature Genetics, 46(8), 818-825. doi: 10.1038/ng.3021
Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging, 6(6), 454-467. Retrieved from http://www.impactaging.com/papers/v6/n6/full/100661.html.
Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution, 75, 143-152. doi: 10.1016/j.jhevol.2014.08.001
Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology, 14: 190. doi: 10.1186/s12862-014-0190-3
Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics, 94(3), 426-436. doi: 10.1016/j.ajhg.2014.02.003
Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics, 5: 13. doi: 10.1186/2041-2223-5-13
Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications, 5: 4689. doi: 10.1038/ncomms5689
Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology, 24(8), 875-879. doi: 10.1016/j.cub.2014.03.027
Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences of the United States of America, 111(7), 2632 -2637. doi: 10.1073/pnas.1313787111

2013

Barbieri, C., Vicente, M., Rocha, J., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013). Ancient substructure in early mtDNA lineages of southern Africa. American Journal of Human Genetics, 92, 285-292. doi: 10.1016/j.ajhg.2012.12.010
Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2013). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences, 281(1774): 20132072. doi: 10.1098/rspb.2013.2072
Duggan, A. T., & Stoneking, M. (2013). A highly unstable recent mutation in human mtDNA. American Journal of Human Genetics, 92(2), 279-284. doi: 10.1016/j.ajhg.2012.12.004
Grossmann, T., Vaish, A., Franz, J., Schroeder, R., Stoneking, M., & Friederici, A. D. (2013). Emotional voice processing: Investigating the role of genetic variation in the serotonin transporter across development. PLoS One, 8(7): e68377. doi: 10.1371/journal.pone.0068377
Li, J., Nasidze, I., Quinque, D., Li, M., Horz, H.-P., Andre, C., Garriga, R. M., Halbwax, M., Fischer, A., & Stoneking, M. (2013). The saliva microbiome of Pan and Homo. BMC Microbiology, 13: 204. doi: 10.1186/1471-2180-13-204
Pugach, I., Delfin, F., Gunnarsdóttir, E., Kayser, M., & Stoneking, M. (2013). Genome-wide data substantiate Holocene gene flow from India to Australia. Proceedings of the National Academy of Sciences of the United States of America, 110(5), 1803-1808. doi: 10.1073/pnas.1211927110
Stoneking, M. (2013). Mitochondrial genome: Evolution. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley. doi: 10.1002/9780470015902.a0005074.pub3
Stoneking, M., & Harvati, K. (2013). Early Old World migrations of Homo sapiens: human biology. In The Encyclopedia of Global Human Migration, P. I. Hoboken, NJ: Wiley-Backwell. doi: 10.1002/9781444351071.wbeghm805

2012

Ballantyne, K. N., van Oven, M., Ralf, A., Stoneking, M., Mitchell, R. J., van Oorschot, R. A., & Kayser, M. (2012). MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania. Forensic Science International: Genetics, 6(4), 425-436. doi: 10.1016/j.fsigen.2011.08.010
de Filippo, C., Bostoen, K., Stoneking, M., & Pakendorf, B. (2012). Bringing together linguistic and genetic evidence to test the Bantu expansion. Proceedings of the Royal Society B: Biological Sciences, 279(1741), 3256-3263. doi: 10.1098/rspb.2012.0318
Delfin, F., Myles, S., Choi, Y., Hughes, D., Illek, R., van Oven, M., Pakendorf, B., Kayser, M., & Stoneking, M. (2012). Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands. Molecular Biology and Evolution, 29(2), 545-564. doi: 10.1093/molbev/msr186
Jinam, T. A., Hong, L.-C., Phipps, M. E., Stoneking, M., Ameen, M., Edo, J., HUGO Pan-Asian SNP Consortium, & Saitou, N. (2012). Evolutionary history of continental South East Asians: "Early Train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Molecular Biology and Evolution, 29(11), 3513-3527. doi: 10.1093/molbev/mss169
Kenny, E. E., Timpson, N. J., Sikora, M., Yee, M.-C., Moreno-Estrada, A., Eng, C., Huntsman, S., Burchard, E. G., Stoneking, M., Bustamante, C. D., & Myles, S. (2012). Melanesian blond hair is caused by an amino acid change in TYRP1. Science, 336(6081), 554-554. doi: 10.1126/science.1217849
Li, J., Menard, V., Benish, R. L., Jurevic, R. J., Guillemette, C., Stoneking, M., Zimmerman, P. A., & Mehlotra, R. K. (2012). Worldwide variation in human drug-metabolism enzyme genes CYP2B6 and UGT2B7: implications for HIV/AIDS treatment. Pharmacogenomics, 13(5), 555-570. doi: 10.2217/pgs.11.160
Li, M., & Stoneking, M. (2012). A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology, 13(5): R34. doi: 10.1186/gb-2012-13-5-r34
Li, M., Schröder, R., Ko, A.-M.-S., & Stoneking, M. (2012). Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs. Nucleic Acids Research, 40(18): e137. doi: 10.1093/nar/gks499
Pickrell, J. K., Patterson, N., Berthold, F., Barbieri, C., Gerlach, L., Gueldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., Lipson, M., Loh, P.-R., Lachance, J., Mountain, J., Bustamante, C. D., Berger, B., Tishkoff, S. A., Henn, B. M., Stoneking, M., Reich, D., & Pakendorf, B. (2012). The genetic prehistory of southern Africa. Nature Communications, 3: 1143. doi: 10.1038/ncomms2140
Quillen, E. E., Bauchet, M., Bigham, A. W., Delgado-Burbano, M. E., Faust, F. X., Klimentidis, Y. C., Mao, X., Stoneking, M., & Shriver, M. D. (2012). OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans. Human Genetics, 131(7), 1073-1080. doi: 10.1007/s00439-011-1135-1
Theunert, C., Tang, K., Lachmann, M., Hu, S., & Stoneking, M. (2012). Inferring the history of population size change from genome-wide SNP data. Molecular Biology and Evolution, 29(2), 3653-3667. doi: 10.1093/molbev/mss175
Xu, S., Pugach, I., Stoneking, M., Kayser, M., Jina, L., & The HUGO Pan-Asian SNP Consortium (2012). Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579. doi: 10.1073/pnas.1118892109

2011

de Filippo, C., Barbieri, C., Whitten, M., Mpoloka, S. W., Gunnarsdóttir, E. D., Bostoen, K., Nyambe, T., Beyer, K., Schreiber, H., Knijff, P. d., Luiselli, D., Stoneking, M., & Pakendorf, B. (2011). Y-chromosomal variation in sub-saharan Africa: Insights into the history of Niger-Congo groups. Molecular Biology and Evolution, 28(3): msq312v1, pp. 1255-1269. doi: 10.1093/molbev/msq312
Delfin, F., Salvador, J. M., Calacal, G. C., Perdigon, H. B., Tabbada, K. A., Villamor, L. P., Halos, S. C., Gunnarsdóttir, E., Myles, S., Hughes, D. A., Xu, S., Jin, L., Lao, O., Kayser, M., Hurles, M. E., Stoneking, M., & Ungria, M. C. A. d. (2011). The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups. European Journal of Human Genetics, 19(2), 224-230. doi: 10.1038/ejhg.2010.162
Gross, A., Tönjes, A., Kovacs, P., Veeramah, K. R., Ahnert, P., Roshyara, N. R., Gieger, C., Rueckert, I.-M., Loeffler, M., Stoneking, M., Wichmann, H.-E., Novembre, J., Stumvoll, M., & Scholz, M. (2011). Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays. BMC Genetics, 12: 67. doi: 10.1186/1471-2156-12-67
Grossmann, T., Johnson, M. H., Vaish, A., Hughes, D. A., Quinque, D., Stoneking, M., & Friederici, A. D. (2011). Genetic and neural dissociation of individual responses to emotional expressions in human infants. Developmental Cognitive Neuroscience, 1(1), 57-66. doi: 10.1016/j.dcn.2010.07.001
Gunnarsdóttir, E. D., Li, M., Bauchet, M., Finstermeier, K., & Stoneking, M. (2011). High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research, 21(1), 1-11. doi: 10.1101/gr.107615.110
Gunnarsdóttir, E. D., Nandineni, M. R., Li, M., Myles, S., Gil, D., Pakendorf, B., & Stoneking, M. (2011). Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2: 228. doi: 10.1038/ncomms1235
Li, J., Zhang, L., Zhou, H., Stoneking, M., & Tang, K. (2011). Global patterns of genetic diversity and signals of natural selection for human ADME genes. Human Molecular Genetics, 20(3), 528-540. doi: 10.1093/hmg/ddq498
Myles, S., Lea, R. A., Ohashi, J., Chambers, G. K., Weiss, J. G., Hardouin, E., Engelken, J., Macartney-Coxson, D. P., Eccles, D. A., Naka, I., Kimura, R., Inaoka, T., Matsumura, Y., & Stoneking, M. (2011). Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans. BMC Medical Genetics, 12(1): 10, pp. 1-7. doi: 10.1186/1471-2350-12-10
Nasidze, I., & Stoneking, M. (2011). Microbiome diversity in human saliva. In F. J. d. Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 335-339). New York: Wiley.
Nasidze, I., Li, J., Schroeder, R., Creasey, J. L., Li, M., & Stoneking, M. (2011). High diversity of the saliva microbiome in Batwa pygmies. PLoS ONE, 6(8): e23352. doi: 10.1371/journal.pone.0023352
Pugach, I., Matveyev, R., Wollstein, A., Kayser, M., & Stoneking, M. (2011). Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biology, 12(2): R19, pp. 1-18. doi: 10.1186/gb-2011-12-2-r19
Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A.-M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., Saitou, N., Wollstein, A., Kayser, M., Pääbo, S., & Stoneking, M. (2011). Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. The American Journal of Human Genetics, 89(4), 516-528. doi: 10.1016/j.ajhg.2011.09.005
Schönberg, A., Theunert, C., Li, M., Stoneking, M., & Nasidze, I. (2011). High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences. European Journal of Human Genetics, 19(9), 988-994. doi: 10.1038/ejhg.2011.62
Stoneking, M., & Krause, J. (2011). Learning about human population history from ancient and modern genomes. Nature Reviews Genetics, 12(9), 603-614. doi: 10.1038/nrg3029

2010

Athanasiadis, G., Esteban, E., Gayà-Vidal, M., Dugoujon, J.-M., Moschonas, N., Chaabani, H., Bissar-Tadmouri, N., Harich, N., Stoneking, M., & Moral, P. (2010). Different evolutionary histories of the coagulation factor VII gene in human populations? Annals of Human Genetics, 74(1), 34-45. doi: 10.1111/j.1469-1809.2009.00557.x
Athanasiadis, G., González-Pérez, E., Esteban, E., Dugoujon, J.-M., Stoneking, M., & Moral, P. (2010). The Mediterranean Sea as a barrier to gene flow: Evidence from variation in and around the F7 and F12 genomic regions. BMC Evolutionary Biology, 10: 84. doi: 10.1186/1471-2148-10-84
de Filippo, C., Heyn, P., Barham, L., Stoneking, M., & Pakendorf, B. (2010). Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia. American Journal of Physical Anthropology, 141(3), 382-394. doi: 10.1002/ajpa.21155
Li, M., Schönberg, A., Schaefer, M., Schroeder, R., Nasidze, I., & Stoneking, M. (2010). Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. The American Journal of Human Genetics, 87(2), 237-249. doi: 10.1016/j.ajhg.2010.07.014
Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060. doi: 10.1038/nature09710
Stoneking, M., & Delfin, F. S. (2010). The human genetic history of East Asia: Weaving a complex tapestry. Current Biology, 20(4), R188-R193. doi: 10.1016/j.cub.2009.11.052
Wollstein, A., Lao, O., Becker, C., Brauer, S., Trent, R. J., Nürnberg, P., Stoneking, M., & Kayser, M. (2010). Demographic history of Oceania inferred from genome-wide data. Current Biology, 20, 1983-1992. doi: 10.1016/j.cub.2010.10.040

2009

Balaresque, P., Parkin, E. J., Roewer, L., Carvalho-Silva, D. R., Mitchell, R. J., Oorschot, R. A. H. v., Henke, J., Stoneking, M., Nasidze, I., Wetton, J., Knijff, P. d., Tyler-Smith, C., & Jobling, M. A. (2009). Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. International Journal of Legal Medicine, 123(1), 15-23. doi: 10.1007/s00414-008-0253-3
Hillmer, A. M., Freudenberg, J., Myles, S., Herms, S., Tang, K., Hughes, D. A., Brockschmidt, F. F., Ruan, Y., Stoneking, M., & Nöthen, M. M. (2009). Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Human Genetics, 126(2), 223-232. doi: 10.1007/s00439-009-0668-z
Hughes, D. A., Hinney, A., Brumm, H., Wermter, A.-K., Biebermann, H., Hebebrand, J., & Stoneking, M. (2009). Increased constraints on MC4R during primate and human evolution. Human Genetics, 124(6), 633-647. doi: 10.1007/s00439-008-0591-8
Hughes, D. A., Jastroch, M., Stoneking, M., & Klingenspor, M. (2009). Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis. BMC Evolutionary Biology, 9: 4. doi: 10.1186/1471-2148-9-4
López Herráez, D., Bauchet, M., Tang, K., Theunert, C., Pugach, I., Li, J., Nandineni, M. R., Gross, A., Scholz, M., & Stoneking, M. (2009). Genetic variation and recent positive selection in worldwide human populations: Evidence from nearly 1 million SNPs. PLoS ONE, 4(11): e7888. doi: 10.1371/journal.pone.0007888
Mona, S., Grunz, K. E., Brauer, S., Pakendorf, B., Castrì, L., Sudoyo, H., Marzuki, S., Barnes, R. H., Schmidtke, J., Stoneking, M., & Kayser, M. (2009). Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Molecular Biology and Evolution, 26(8), 1865-1877. doi: 10.1093/molbev/msp097
Moreno-Estrada, A., Tang, K., Sikora, M., Marquès-Bonet, T., Casals, F., Navarro, A., Calafell, F., Bertranpetit, J., Stoneking, M., & Bosch, E. (2009). Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution, 26(10), 2285-2297. doi: 10.1093/molbev/msp134
Myles, S., Stoneking, M., & Timpson, N. (2009). An assessment of the portability of ancestry informative markers between human populations. BMC Medical Genomics, 2: 45. doi: 10.1186/1755-8794-2-45
Nasidze, I., Li, J., Quinque, D., Tang, K., & Stoneking, M. (2009). Global diversity in the human salivary microbiome. Genome Research, 19(4), 636-643. doi: 10.1101/gr.084616.108
Nasidze, I., Quinque, D., Li, J., Li, M., Tang, K., & Stoneking, M. (2009). Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches. Analytical Biochemistry, 391(1), 64-68. doi: 10.1016/j.ab.2009.04.034
Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., Asadova, P., Zhukova, O., & Stoneking, M. (2009). MtDNA and Y-chromosome variation in the Talysh of Iran and Azerbaijan. American Journal of Physical Anthropology, 138(1), 82-89. doi: 10.1002/ajpa.20903
Roewer, L., Willuweit, S., Stoneking, M., & Nasidze, I. (2009). A Y-STR database of Iranian and Azerbaijanian minority populations. Forensic Science International: Genetics, 4(1), e53-e55. doi: 10.1016/j.fsigen.2009.05.002
Ryan, A. W., Hughes, D. A., Tang, K., Kelleher, D. P., Ryan, T., McManus, R., & Stoneking, M. (2009). Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus. European Journal of Human Genetics, 17(2), 219-227. doi: 10.1038/ejhg.2008.137
Stoneking, M. (2009). Humans as second orangutans: sense or nonsense? BioEssays, 31(10), 1010-1012. doi: 10.1002/bies.200900113

2008

Balaresque, P., Bowden, G. R., Parkin, E. J., Omran, G. A., Heyer, E., Quintana-Murci, L., Roewer, L., Stoneking, M., Nasidze, I., Carvalho-Silva, D. R., Tyler-Smith, C., de Knijff, P., & Jobling, M. A. (2008). Dynamic nature of the proximal AZFc region of the human Y chromosome: Multiple independent deletion and duplication events revealed by microsatellite analysis. Human Mutation, 29(10), 1171-1180. doi: 10.1002/humu.20757
Bryk, J., Hardouin, E., Pugach, I., Hughes, D. A., Strotmann, R., Stoneking, M., & Myles, S. (2008). Positive selection in East Asians for an EDAR allele that enhances NF-kappaB activation. PLoS ONE, 3(5): e2209. doi: 10.1371/journal.pone.0002209
Fechner, A., Quinque, D., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Willuweit, S., Zhukova, O., Roewer, L., Stoneking, M., & Nasidze, I. (2008). Boundaries and clines in the West Eurasian Y-chromosome landscape: Insights from the European part of Russia. American Journal of Physical Anthropology, 137(1), 41-47. doi: 10.1002/ajpa.20838
Güldemann, T., & Stoneking, M. (2008). A historical appraisal of clicks: A linguistic and genetic population perspective. Annual Review of Anthropology, 37, 93-109. doi: 10.1146/annurev.anthro.37.081407.085109
Herráez, D. L., & Stoneking, M. (2008). High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping. Analytical Biochemistry, 383(2), 329-331. doi: 10.1016/j.ab.2008.08.015
Hughes, D. A., Tang, K., Strotmann, R., Schöneberg, T., Prenen, J., Nilius, B., & Stoneking, M. (2008). Parallel selection on TRPV6 in human populations. PLoS One, 3(3): e1686. doi: 10.1371/journal.pone.0001686
Kayser, M., Choi, Y., Oven, M. v., Mona, S., Brauer, S., Trent, R. J., Suarkia, D., Schiefenhövel, W., & Stoneking, M. (2008). The impact of the Austronesian expansion: Evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia. Molecular Biology and Evolution, 25(7), 1362-1374. doi: 10.1093/molbev/msn078
Kayser, M., Lao, O., & Stoneking, M. (2008). Reply to Hedrick: East Asian and Melanesian ancestry in Polynesians. American Journal of Human Genetics, 83(1), 140-142. doi: 10.1016/j.ajhg.2008.06.007
Kayser, M., Lao, O., Saar, K., Brauer, S., Wang, X., Nürnberg, P., Trent, R. J., & Stoneking, M. (2008). Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. American Journal of Human Genetics, 82(1), 194-198. doi: 10.1016/j.ajhg.2007.09.010
Klingenspor, M., Fromme, T., Hughes, D. A., Manzke, L., Polymeropoulos, E., Riemann, T., Trzcionka, M., Hirschberg, V., & Jastroch, M. (2008). An ancient look at UCP1. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1777(7-8), 637-641. doi: 10.1016/j.bbabio.2008.03.006
Mehlotra, R. K., Mattera, G., Bockarie, M. J., Maguire, J. D., Baird, J. K., Sharma, Y. D., Alifrangis, M., Dorsey, G., Rosenthal, P. J., Fryauff, D. J., Kazura, J. W., Stoneking, M., & Zimmerman, P. A. (2008). Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy, 52(6), 2212-2222. doi: 10.1128/AAC.00089-08
Myles, S., Davison, D., Barrett, J., Stoneking, M., & Timpson, N. (2008). Worldwide population differentiation at disease-associated SNPs. BMC Medical Genomics, 1: 22. doi: 10.1186/1755-8794-1-22
Myles, S., Tang, K., Somel, M., Green, R. E., Kelso, J. F., & Stoneking, M. (2008). Identification and analysis of genomic regions with large between-population differentiation in humans. Annals of Human Genetics, 72(1), 99-110. doi: 10.1111/j.1469-1809.2007.00390.x
Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2008). Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Annals of Human Genetics, 72(2), 241-252. doi: 10.1111/j.1469-1809.2007.00413.x
Roewer, L., Willuweit, S., Krüger, C., Nagy, M., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Zhukova, O., Stoneking, M., & Nasidze, I. (2008). Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. International Journal of Legal Medicine, 122(3), 219-223. doi: 10.1007/s00414-007-0222-2
Stoneking, M. (2008). Human origins - the molecular perspective. EMBO Reports, 9(Supplement 1), S46-S50. doi: 10.1038/embor.2008.64
Stoneking, M. (2008). Mitochondrial genome: Evolution. In Encyclopedia of Life Sciences (ELS). Chichester: Wiley. doi: 10.1002/9780470015902.a0005074.pub2

2007

Cordaux, R., Srikanta, D., Lee, J., Stoneking, M., & Batzer, M. A. (2007). In search of polymorphic alu insertions with restricted geographic distributions. Genomics, 90(1), 154-158. doi: 10.1016/j.ygeno.2007.03.010
DaRe, J. T., Mehlotra, R. K., Michon, P., Mueller, I., Reeder, J. C., Sharma, Y. D., Stoneking, M., & Zimmerman, P. A. (2007). Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea. Malaria Journal, 6: 34. doi: 10.1186/1475-2875-6-34
Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M. T. P., Younghusband, B., Young, T., Marshall, I., Willerslev, E., Stoneking, M., & Poinar, H. N. (2007). A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA. American Journal of Physical Anthropology, 132(4), 594-604. doi: 10.1002/ajpa.20536
Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D. A., Rohland, N., Pilli, E., Longo, L., Condemi, S., de la Rasilla, M., Fortea, J., Rosas, A., Stoneking, M., Schöneberg, T., Bertranpetit, J., & Hofreiter, M. (2007). A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, 318(5855), 1453-1455. doi: 10.1126/science.1147417
Myles, S., Hradetzky, E., Engelken, J., Lao, O., Nürnberg, P., Trent, R. J., Wang, X., Kayser, M., & Stoneking, M. (2007). Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians. European Journal of Human Genetics, 15, 584-589. doi: 10.1038/sj.ejhg.5201793
Myles, S., Somel, M., Tang, K., Kelso, J. F., & Stoneking, M. (2007). Identifying genes underlying skin pigmentation differences among human populations. Human Genetics, 120(5), 613-621. doi: 10.1007/s00439-006-0256-4
Nasidze, I., Quinque, D., Udina, I., Kunizheva, S., & Stoneking, M. (2007). The Gagauz, a linguistic enclave, are not a genetic isolate. Annals of Human Genetics, 71(3), 379-389. doi: 10.1111/j.1469-1809.2006.00330.x
Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., & Stoneking, M. (2007). Mating patterns amongst Siberian reindeer herders: Inferences from mtDNA and Y-chromosomal analyses. American Journal of Physical Anthropology, 133(3), 1013-1027. doi: 10.1002/ajpa.20590
Roewer, L., Krüger, C., Willuweit, S., Nagy, M., Rodig, H., Kokshunova, L., Rothämel, T., Kravchenko, S. A., Jobling, M. A., Stoneking, M., & Nasidze, I. (2007). Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Science International, 173(2-3), 204-209. doi: 10.1016/j.forsciint.2006.11.013
Rootsi, S., Zhivotovsky, L. A., Baldovic, M., Kayser, M., Kutuev, I. A., Khusainova, R., Bermisheva, M. A., Gubina, M., Fedorova, S. A., Ilumäe, A.-M., Khusnutdinova, E., Voevoda, M. I., Osipova, L. P., Stoneking, M., Lin, A. A., Ferak, V., Parik, J., Kivisild, T., Underhill, P. A., & Villems, R. (2007). A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. European Journal of Human Genetics, 15(2), 204-211. doi: 10.1038/sj.ejhg.5201748
Stoneking, M., & Kayser, M. (2007). Genealogical markers: mtDNA and the Y-chromosome. In Michael P. Weiner, Stacey B. Gabriel, J. Claiborne Stephens (Ed.), Genetic Variation: A Laboratory Manual (pp. 421-436). New York: Cold Spring Harbor Laborarory Press.
Stoneking, M., & Nasidze, I. (2007). Reply to Parson: The art of reading sequence electropherograms. Annals of Human Genetics, 71(2), 279-280. doi: 10.1111/j.1469-1809.2006.00320_1.x

2006

Hammer, M. F., Karafet, H., Park, H.-S., Omoto, K., Harihara, S., Stoneking, M., & Horai, S. (2006). Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics, 51, 47-58. doi: 10.1007/s10038-005-0322-0
Kayser, M., Brauer, S., Cordaux, R., Casto, A., Lao, O., Zhivotovsky, L. A., Moyse-Faurie, C., Rutledge, R., Schiefenhövel, W., Gil, D., Lin, A. A., Underhill, P. A., Oefner, P. J., Trent, R. J., & Stoneking, M. (2006). Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution, 23(11), 2234-2244. doi: 10.1093/molbev/msl093
Nasidze, I., & Stoneking, M. (2006). Mother tongue: Concomitant replacement of language and mtDNA in South Caspian populations of Iran. In Cangelosi, A.; Smith, A.; (Ed.), Evolution of Language: Proceedings of the 6th international conference EVOLANG6, Rome, Italy, 12-15 April 2006 (pp. 432-433). New Jersey: World Scientific.
Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2006). Concomitant replacement of language and mtDNA in South Caspian populations of Iran. Current Biology, 16(7), 668-673. doi: 10.1016/j.cub.2006.02.021
Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., Danilova, A. P., Protod´jakonov, A., & Stoneking, M. (2006). Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Human Genetics, 120(3), 334-353. doi: 10.1007/s00439-006-0213-2
Quinque, D., Kittler, R., Kayser, M., Stoneking, M., & Nasidze, I. (2006). Evaluation of saliva as a source of human DNA for population and association studies. Analytical Biochemistry, 353(2), 272-277. doi: 10.1016/j.ab.2006.03.021
Stoneking, M. (2006). Genetic evidence for our recent African ancestry. In Soodyall, Himla (Ed.), Prehistory of Africa (pp. 24-36). Johannesburg: Ball.
Stoneking, M. (2006). Investigating the health of our ancestors: Insights from the evolutionary genetic consequences of prehistoric diseases. In Bromage, Timothy (Ed.), Integrative Approaches to Human Health and Evolution: proceedings.. (pp. 106-114). Amsterdam [u.a.]: Elsevier.
Stoneking, M., & Nasidze, I. (2006). The patient is not dead yet: Premature autopsy of an mtDNA data set. Annals Human Genetics, 70(3), 327-331. doi: 10.1111/j.1469-1809.2005.00235.x

2005

Hamilton, G., Stoneking, M., & Excoffier, L. (2005). Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences of the United States of America, 102(21), 7476-7480. doi: 10.1073 pnas.0409253102
Mehlotra, R. K., Mattera, G., Bhatia, K., Reeder, J. C., Stoneking, M., & Zimmerman, P. A. (2005). Insight into the early spread of chloroquine resistant Plasmodium falciparum infections in Papua New Guinea. Journal of Infectious Diseases, 192(12), 2174-2179. doi: 10.1086/497694
Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L., & Stoneking, M. (2005). Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology, 128(4), 846-854. doi: 10.1002/ajpa.20159
Nasidze, I., Quinque, D., Ozturk, M., Bendukidze, N., & Stoneking, M. (2005). MtDNA and Y-chromosome variation in Kurdish groups. Annals of Human Genetics, 69(4), 401-412. doi: 10.1046/j.1529-8817.2005.00174.x
Oota, H., Pakendorf, B., Weiss, G., von Haeseler, A., Pookajorn, S., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2005). Recent origin and cultural reversion of a hunter–gatherer group. PLoS Biology, 3(3): e71. doi: 10.1371/journal.pbio.0030071
Pakendorf, B., & Stoneking, M. (2005). Mitochondrial DNA and human evolution. Annual Review of Genomics and Human Genetics, 6, 165-183. doi: 10.1146/annurev.genom.6.080604.162249
Stoneking, M. (2005). Gene, Geographie und Sprache. In Günter Hauska (Ed.), Gene, Sprachen und ihre Evolution: wie verwandt sind die Menschen - wie verwandt sind ihre Sprachen? (pp. 133-140). Regensburg: Universitätsverlag Regensburg.

2004

Cordaux, R., Aunger, R., Bentley, G. R., Nasidze, I., Sirajuddin, S. M., & Stoneking, M. (2004). Independent origins of Indian caste and tribal paternal lineages. Current Biology, 14(3), 231-235. doi: 10.1016/j.cub.2004.01.024
Cordaux, R., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2004). Y-STR haplotypes from eight south Indian groups based on five loci. Journal of Forensic Sciences, 49(4), 847-848. doi: 10.1520/JFS2003350
Cordaux, R., Edwin, D., Vishwanathan, H., & Stoneking, M. (2004). Genetic evidence for the demic diffusion of agriculture to India. Science, 304(5674), 1125-1125. doi: 10.1126/science.1095819
Cordaux, R., Weiss, G., Saha, N., & Stoneking, M. (2004). The northeast Indian passageway: A barrier or corridor for human migrations? Molecular Biology and Evolution, 21(8), 1525-1533. doi: 10.1093/molbev/msh151
Erler, A., Stoneking, M., & Kayser, M. (2004). Development of Y-chromosomal microsatellite markers for non-human primates. Molecular Ecology, 13(10), 2921-2930. doi: 10.1111/j.1365-294X.2004.02304.x
Hughes, D. A., Cordaux, R., & Stoneking, M. (2004). Humans. Current Biology, 14, R367-R369. doi: 10.1016/j.cub.2004.05.005
Kasperaviciute, D., Kucinskas, V., & Stoneking, M. (2004). Y chromosome and mitochondrial DNA variation in Lithuanians. Annals of Human Genetics, 68(5), 438-452. doi: 10.1046/j.1529-8817.2003.00119.x
Kayser, M., Kittler, R., Erler, A., Hedman, M., Lee, A. C., Mohyuddin, A., Mehdi, S. Q., Rosser, Z. H., Stoneking, M., Jobling, M. A., Sajantila, A., & Tyler-Smith, C. (2004). A comprehensive survey of human Y-chromosomal microsatellites. American Journal of Human Genetics, 74(6), 1183-1197. doi: 10.1086/421531
Nasidze, I., Ling, E. Y., Quinque, D., Dupanloup, I., Cordaux, R., Rychkov, S., Naumova, O., Zhukova, O., Sarraf-Zadegan, N., Naderi, G. A., Asgary, S., Sardas, S., Farhud, D. D., Sarkisian, T., Asadov, C., Kerimov, A., & Stoneking, M. (2004). Mitochondrial DNA and Y-chromosome variation in the Caucasus. Annals of Human Genetics, 68(3), 205-221. doi: 10.1046/j.1529-8817.2004.00092.x
Nasidze, I., Quinque, D., Dupanloup, I., Rychkov, S., Naumova, O., Zhukova, O., & Stoneking, M. (2004). Genetic evidence concerning the origins of South and North Ossetians. Annals of Human Genetics, 68(6), 588-599. doi: 10.1046/j.1529-8817.2004.00131.x
Vishwanathan, H., Deepa, E., Cordaux, R., Stoneking, M., Usha Rani, M. V., & Majumder, P. P. (2004). Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers. Annals Human Genetics, 68(2), 128-138. doi: 10.1046/j.1529-8817.2003.00083.x

2003

Cordaux, R., & Stoneking, M. (2003). South Asia: the Andamanese and the genetic evidence for an "early" human dispersal out of Africa. American Journal of Human Genetics, 72(6), 1586-1590. doi: 10.1086/375407
Cordaux, R., Saha, N., Bentley, G. R., Aunger, A., Sirajuddin, S. M., & Stoneking, M. (2003). Mitochondrial DNA analysis reveals diverse histories of tribal populations of India. European Journal of Human Genetics, 11(3), 253-264. doi: 10.1038/sj.ejhg.5200949
Kayser, M., Brauer, S., & Stoneking, M. (2003). A genome scan to detect candidate regions influenced by local natural selection in human populations. Molecular Biology and Evolution, 20(6), 893-900. doi: 10.1093/molbev/msg092
Kayser, M., Brauer, S., Schädlich, H., Prinz, M., Batzer, M. A., Zimmerman, P. A., Boatin, B. A., & Stoneking, M. (2003). Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Research, 13, 624-634. doi: 10.1101/gr.463003
Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., Shen, P. D., Oefner, P. J., Tommaseo-Ponzetta, M., & Stoneking, M. (2003). Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. American Journal of Human Genetics, 72(2), 281-302. doi: 10.1086/346065
Kittler, R., Erler, A., Brauer, S., Stoneking, M., & Kayser, M. (2003). Apparent intra-chromosomal exchange on the human Y chromosome explained by population history. European Journal of Human Genetics, 11, 304-314. doi: 10.1038/sj.ejhg.5200960
Kittler, R., Kayser, M., & Stoneking, M. (2003). Molecular evolution of Pediculus humanus and the origin of clothing. Current Biology, 13(16), 1414-1417. doi: 10.1016/S0960-9822(03)00507-4
Nasidze, I., Sarkisian, T., Kerimov, A., & Stoneking, M. (2003). Testing hypotheses of language replacement in the Caucasus: Evidence from the Y-chromosome. Human Genetics, 112(3), 255-261. doi: 10.1007/s00439-002-0874-4
Nasidze, I., Schädlich, H., & Stoneking, M. (2003). Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci. Forensic Science International, 137(1), 85-93. doi: 10.1016/S0379-0738(03)00272-X
Pakendorf, B., Wiebe, V., Tarskaia, L. A., Spitsyn, V. A., Soodyall, H., Rodewald, A., & Stoneking, M. (2003). Mitochondrial DNA evidence for admixed origins of central Siberian populations. American Journal of Physical Anthropology, 120(3), 211-224. doi: 10.1002/ajpa.10145
Stoneking, M. (2003). Mitochondrial genome: Evolution. In David N. Cooper (Ed.), Nature encyclopedia of the human genome: vol. 3 (GEN - MIT) (pp. 1019-1023). London [et al]: Nature Publishing Group.
Stoneking, M. (2003). Widespread prehistoric human cannibalism: Easier to swallow? Trends in Ecology & Evolution, 18(10), 489-490. doi: 10.1016/S0169-5347(03)00215-5

2002

Kayser, M., Brauer, S., Willuweit, S., Schädlich, H., Batzer, M. A., Zawacki, J., Prinz, M., Roewer, L., & Stoneking, M. (2002). Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for US populations. Journal of Forensic Sciences, 47(3), 513-519. doi: 10.1520/JFS15290J
Kittler, R., Stoneking, M., & Kayser, M. (2002). A whole genome amplification method to generate long fragments from low quantities of genomic DNA. Analytical Biochemistry, 300(2), 237-244. doi: 10.1006/abio.2001.5460
Nasidze, I., & Stoneking, M. (2002). Genetic variation among human populations from the Caucasus. In Shumny, V. K.; Kolchanov, N. A.; Fedotov, A. M. (Ed.), The First Workshop on Information Techologies Application to Problems of Biodiversity and Dynamics (pp. 272-278). Novosibirsk, Russia: Russian Academy od Sciences.
Oota, H., Kitano, T., Jin, F., Yuasa, I., Wang, L., Ueda, S., Saitou, N., & Stoneking, M. (2002). Extreme mtDNA homogeneity in continental Asian populations. American Journal of Physical Anthropology, 118(2), 146-153. doi: 10.1002/ajpa.10056
Pakendorf, B., Morar, B., Tarskaia, L. A., Kayser, M., Soodyall, H., Rodewald, A., & Stoneking, M. (2002). Y-chromosomal evidence for a strong reduction in male population size of Yakuts. Human Genetics, 110(2), 198-200. doi: 10.1007/s00439-001-0664-4
Romualdi, C., Balding, D., Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Stoneking, M., Batzer, M. A., & Barbujani, G. (2002). Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research, 12(4), 602-612. doi: 10.1101/gr.214902

2001

Begovich, A. B., Moonsamy, P. V., Mack, S. J., Barcellos, L. F., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Konenkov, V. I., Sartakova, M. L., Titanji, V. P. K., Rickards, O., & Klitz, W. (2001). Genetic variability and linkage disequilibrium within the DP region: Analysis of 15 different populations. Tissue Antigens, 57(5), 424-439. doi: 10.1034/j.1399-0039.2001.057005424.x
Donnelly, P., Foley, R., Stoneking, M., Deininger, P. L., & Batzer, M. A. (2001). Alu insertion polymorphisms in humans: A review. In Genes, Fossils and Behaviour (pp. 111-121). Amsterdam: IOS Press.
Justice, C. M., Den, Z., Nguyen, S. V., Stoneking, M., Deininger, P. L., Batzer, M. A., & Keats, B. J. B. (2001). Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution, 52(3), 232-238. doi: 10.1007/s002390010151
Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., & Stoneking, M. (2001). Independent histories of human Y chromosomes from Melanesia and Australia. American Journal of Human Genetics, 68(1), 173-190. doi: 10.1086/316949
Melton, T., Clifford, S., Kayser, M., Nasidze, I., Batzer, M. A., & Stoneking, M. (2001). Diversity and heterogeneity in mitochondrial DNA of North American populations. Journal of Forensic Sciences, 46(1), 46-52. doi: 10.1520/JFS14909J
Nasidze, I., & Stoneking, M. (2001). Mitochondrial DNA variation and language replacements in the Caucasus. Proceedings of the Royal Society of London B, 268(1472), 1197-1206. doi: 10.1098/rspb.2001.1610
Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Batzer, M. A., & Stoneking, M. (2001). Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. European Journal of Human Genetics, 9, 267-272. doi: 10.1038/sj.ejhg.5200615
Oota, H., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2001). Human mtDNA and Y-chromosome variation is correlated with matrilocal vs. patrilocal residence. Nature Genetics, 29, 20-21. doi: 10.1038/ng711
Stone, A. C., Starrs, J. E., & Stoneking, M. (2001). Mitochondrial DNA analysis of the presumptive remains of Jesse James. Journal of Forensic Sciences, 46(1), 173-176. doi: 10.1520/JFS14932J
Stoneking, M. (2001). Single nucleotide polymorphisms: From the evolutionary past.. Nature, 409, 821-822. doi: 10.1038/35057279
Tishkoff, S. A., Varkonyi, R., Cahinhinan, N., Abbes, S., Argyropoulos, G., Destro-Bisol, G., Drousiotou, A., Dangerfield, B., Lefranc, G., Loiselet, J., Piro, A., Stoneking, M., Tagarelli, A., Tagarelli, G., Touma, E. H., Williams, S. M., & Clark, A. G. (2001). Haplotype diversity and linkage disequilibrium at human G6PD recent origin of alleles that confer malarial resistance. Science, 293(5529), 455-462. doi: 10.1126/science.1061573

2000

Begovich, A. B., Klitz, W., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Rickards, O., Titanji, V. P. K., Konenkov, V. I., & Sartakova, M. L. (2000). HLA-DQ haplotypes in 15 different populations. In M. Kasahara (Ed.), The Major Histocompatibility Complex: Evolution, Structure and Function (pp. 412-426). Tokyo: Springer.
Clark, V. J., Sivendren, S., Saha, N., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2000). The 9-bp deletion between the mitochondrial lysine tRNA and COII genes in tribal populations of India. Human Biology, 72(2), 273-285.
Comas, D., Calafell, F., Benchemsi, N., Helal, A., Lefranc, G., Stoneking, M., Batzer, M. A., Bertranpetit, J., & Sajantila, A. (2000). Alu insertion polymorphisms in Northwest Africa and the Iberian Peninsula: Evidence for a strong genetic boundary through the Gibraltar Straits. Human Genetics, 107(4), 312-319. doi: 10.1007/s004390000370
Di Benedetto, G., Nasidze, I., Stenico, M., Nigro, L., Krings, M., Lanzinger, M., Vigilant, L., Stoneking, M., Pääbo, S., & Barbujani, G. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. European Journal of Human Genetics, 8, 669-677. doi: 10.1038/sj.ejhg.5200514
Kayser, M., Roewer, L., Hedman, M., Henke, L., Henke, J., Brauer, S., Kruger, C., Krawczak, M., Nagy, M., Dobosz, T., Szibor, R., de Knijff, P., Stoneking, M., & Sajantila, A. (2000). Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome revealed by direct observation in father/son pairs. American Journal of Human Genetics, 66(5), 1580-1588. doi: 10.1086/302905
Kumar, S., Hedrick, P. W., Dowling, T., & Stoneking, M. (2000). Questioning evidence for recombination in human mitochondrial DNA. Science, 288(5473), 1931. doi: 10.1126/science.288.5473.1931a
Kumar, S., Nasidze, I., Walimbe, S. R., & Stoneking, M. (2000). Brief communication: Discouraging prospects for ancient DNA from India. American Journal of Physical Anthropology, 113(1), 129-133. doi: 10.1002/1096-8644(200009)113:1<129::aid-ajpa12>3.0.CO;2-2
Mack, S. J., Bugawan, T. L., Moonsamy, P. V., Erlich, J. A., Trachtenberg, E., Paik, Y. K., Begovich, A. B., Saha, N., Beck, H. P., Stoneking, M., & Erlich, H. A. (2000). Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens, 55(5), 383-400. doi: 10.1034/j.1399-0039.2000.550501.x
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