17.10.2017 - 17:11
A  A
Contact

Department of Evolutionary Genetics

Max Planck Institute for Evolutionary Anthropology

Deutscher Platz 6
04103 Leipzig

phone: +49 341 3550 - 500

e-mail: mittag@[>>> Please remove the brackets! <<<]eva.mpg.de

Publications

Last update: October 17th, 2017

2017

Sarkar, A., Stoneking, M., & Nandineni, M. R. (2017). Unraveling the human salivary microbiome diversity in Indian populations. PLoS One, 12(9): e0184515.
DOI    BibTeX   Endnote   

Downloads

Pierron, D., Heiske, M., Razafindrazaka, H., Rakoto, I., Rabetokotany, N., Ravololomanga, B., Rakotozafy, L.-M.-A., Rakotomalala, M. M., Razafiarivony, M., Rasoarifetra, B., Raharijesy, M. A., Razafindralambo, L., Ramilisonina, Fanony, F., Lejamble, S., Thomas, O., Abdallah, A. M., Rocher, C., Arachiche, A., Tonaso, L., Pereda-loth, V., Schiavinato, S., Brucato, N., Ricaut, F.-X., Kusuma, P., Sudoyo, H., Ni, S., Boland, A., Deleuze, J.-F., Beaujard, P., Grange, P., Adelaar, S., Stoneking, M., Rakotoarisoa, J.-A., Radimilahy, C., & Letellier, T. (2017). Genomic landscape of human diversity across Madagascar. Proceedings of the National Academy of Sciences of the United States of America, 114(32), E6498-E6506.
DOI    BibTeX   Endnote   
Jinam, T. A., Phipps, M. E., Aghakhanian, F., Majumder, P. P., Datar, F., Stoneking, M., Sawai, H., Nishida, N., Tokunaga, K., Kawamura, S., Omoto, K., & Saitou, N. (2017). Discerning the origins of the Negritos, first Sundaland people: Deep divergence and archaic admixture. Genome Biology and Evolution, 9(8), 2013-2022.
DOI    BibTeX   Endnote   

Downloads

Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Erratum to: Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(6), 803-803.
DOI    BibTeX   Endnote   
Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(1), 85-98.
DOI    BibTeX   Endnote   

Downloads

Stoneking, M. (2017). An introduction to molecular anthropology. New York [u.a.]: Wiley.
BibTeX   Endnote   

2016

Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F.-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature, 538(7624), 207-214.
DOI    BibTeX   Endnote   
Stoneking, M. (2016). The contribution of genetic ancestry from archaic humans to modern humans. In M. Tibayrenc, & F. J. Ayala (Eds.), On human nature: Biology, psychology, ethics, politics, and religion (pp. 55-61). San Diego [u.a.]: Elsevier.
BibTeX   Endnote   
Pugach, I., Matveev, R., Spitsyn, V., Makarov, S., Novgorodov, I., Osakovsky, V., Stoneking, M., & Pakendorf, B. (2016). The complex admixture history and recent southern origins of Siberian populations. Molecular Biology and Evolution, 33(7), 1777-1795.
DOI    BibTeX   Endnote   

Downloads

Barbieri, C., Hübner, A., Macholdt, E., Ni, S., Lippold, S., Schröder, R., Mpoloka, S. W., Purps, J., Roewer, L., Stoneking, M., & Pakendorf, B. (2016). Refining the Y chromosome phylogeny with southern African sequences. Human Genetics, 135(5), 541-553.
DOI    BibTeX   Endnote   

Downloads

Li, M., Rothwell, R., Vermaat, M., Wachsmuth, M., Schröder, R., Laros, J. F., Oven, M. v., Bakker, P. I. d., Bovenberg, J. A., Duijn, C. M. v., Ommen, G.-J.-B.-v., Slagboom, P. E., Swertz, M. A., Wijmenga, C., Genome of the Netherlands Consortium, Kayser, M., Boomsma, D. I., Zöllner, S., Knijff, P. d., & Stoneking, M. (2016). Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: Support for a variable-size bottleneck. Genome Research, 26(4), 417-426.
DOI    BibTeX   Endnote   
Wachsmuth, M., Hübner, A., Li, M., Madea, B., & Stoneking, M. (2016). Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number. PLoS Genetics, 12(3): e1005939.
DOI    BibTeX   Endnote   

Downloads

Engelken, J., Espadas, G., Mancuso, F. M., Bonet, N., Scherr, A.-L., Jímenez-Álvarez, V., Codina-Solà, M., Medina-Stacey, D., Spataro, N., Stoneking, M., Calafell, F., Sabidó, E., & Bosch, E. (2016). Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution, 33(3), 738-754.
DOI    BibTeX   Endnote   

Downloads

Ni, S., & Stoneking, M. (2016). Improvement in detection of minor alleles in next generation sequencing by base quality recalibration. BMC Genomics, 17: 139.
DOI    BibTeX   Endnote   

Downloads

Stoneking, M. (2016). Archaic genomes and the peopling of South Asia. In G. R. Schug, & S. R. Walimbe (Eds.), A companion to South Asia in the past (pp. 51-59). Malden, MA: Wiley Blackwell.
DOI    BibTeX   Endnote   

2015

de Boer, M., Tzur, S., van Leeuwen, K., Dencher, P. C., Skorecki, K., Wolach, B., Gavrieli, R., Nasidze, I., Stoneking, M., Tanck, M. W., & Roos, D. (2015). A founder effect for p47phoxTrp193Ter chronic granulomatous disease in Kavkazi Jews. Blood Cells, Molecules, and Diseases, 55(4), 320-327.
DOI    BibTeX   Endnote   
Palamara, P. F., Francioli, L. C., Wilton, P. R., Genovese, G., Gusev, A., Finucane, H. K., Sankararaman, S., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Sunyaev, S. R., de Bakker, P. I., Wakeley, J., Pe’er, I., & Price, A. L. (2015). Leveraging distant relatedness to quantify human mutation and gene-conversion rates. The American Journal of Human Genetics, 97(6), 775-789.
DOI    BibTeX   Endnote   
Qin, P., & Stoneking, M. (2015). Denisovan Ancestry in East Eurasian and Native American Populations. Molecular Biology and Evolution, 32(10), 2665-2674.
DOI    BibTeX   Endnote   
Valverde, G., Zhou, H., Lippold, S., de Filippo, C., Tang, K., Herráez, D. L., Li, J., & Stoneking, M. (2015). A novel candidate region for genetic adaptation to high altitude in Andean populations. PLoS One, 10(5): e0125444.
DOI    BibTeX   Endnote   

Downloads

Macholdt, E., Slatkin, M., Pakendorf, B., & Stoneking, M. (2015). New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa. American Journal of Physical Anthropology, 156(4), 661-664.
DOI    BibTeX   Endnote   
Pugach, I., & Stoneking, M. (2015). Genome-wide insights into the genetic history of human populations. Investigative Genetics, 6: 6.
DOI    BibTeX   Endnote   

Downloads

Hughes, D. A., Kircher, M., He, Z., Guo, S., Fairbrother, G. L., Moreno, C. S., Khaitovich, P., & Stoneking, M. (2015). Evaluating intra- and inter-individual variation in the human placental transcriptome. Genome Biology, 16: 54.
DOI    BibTeX   Endnote   

Downloads

van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., van Dijk, F., Willemsen, G., de Geus, E. J., Milaneschi, Y., Penninx, B. W., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., de Craen, A. J., Uh, H.-W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., The Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Jukema, J. W., van der Harst, P., Sijbrands, E. J., Hottenga, J.-J., Uitterlinden, A. G., Swertz, M. A., van Ommen, G.-J.-B., de Bakker, P. I., Slagboom, P. E., Boomsma, D. I., Wijmenga, C., & van Duijn, C. M. (2015). Genome of the Netherlands population - specific imputations identify an ABCA6 variant associated with cholesterol levels. Nature Communications, 6: 6065.
DOI    BibTeX   Endnote   

Downloads

Li, M., Schröder, R., Ni, S., Madea, B., & Stoneking, M. (2015). Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations. Proceedings of the National Academy of Sciences of the United States of America, 112(8), 2491-2496.
DOI    BibTeX   Endnote   
Savage, P. E., Matsumae, H., Oota, H., Stoneking, M., Currie, T. E., Tajima, A., Gillan, M., & Brown, S. (2015). How 'circumpolar' is Ainu music? Musical and genetic perspectives on the history of the Japanese archipelago. Ethnomusicology Forum, 24(3), 443-467.
DOI    BibTeX   Endnote   
van Leeuwen, E. M., Kanterakis, A., Deelen, P., Kattenberg, M. V., The Genome the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Slagboom, P. E., de Bakker, P. I., Wijmenga, C., Swertz, M. A., Boomsma, D. I., van Duijn, C. M., Karrsen, L. C., & Hottenga, J. J. (2015). Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols, 10(9), 1285-1296.
DOI    BibTeX   Endnote   

2014

Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One, 9(6): e9911.
DOI    BibTeX   Endnote   

Downloads

Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics, 94(5), 721-733.
DOI    BibTeX   Endnote   
Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging, 6(6), 454-467.
DOI    BibTeX   Endnote   

Downloads

Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology, 24(8), 875-879.
DOI    BibTeX   Endnote   
Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics, 94(3), 426-436.
DOI    BibTeX   Endnote   
Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology, 153(3), 435-448.
DOI    BibTeX   Endnote   
Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences of the United States of America, 111(7), 2632 -2637.
DOI    BibTeX   Endnote   

Downloads

Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics, 22(2), 228-237.
DOI    BibTeX   Endnote   
Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2014). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences, 281(1774): 20132072.
DOI    BibTeX   Endnote   
Deelen, P., Menelaou, A., van Leeuwen, E. M., Kanterakis, A., van Dijk, F., Medina-Gomez, C., Francioli, L. C., Hottenga, J. J., Karssen, L. C., Estrada, K., Kreiner-Møller, E., Rivadeneira, F., van Setten, J., Gutierrez-Achury, J., Westra, H.-J., Franke, L., van Enckevort, D., Dijkstra, M., Byelas, H., van Duijn, C. M., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, de Bakker, P. I. W., Wijmenga, C., & Swertz, M. A. (2014). Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Human Genetics, 22(11), 1321-1326.
DOI    BibTeX   Endnote   

Downloads

Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development, 29, 9-14.
DOI    BibTeX   Endnote   
Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics, 10(2): e1004128.
DOI    BibTeX   Endnote   

Downloads

Francioli, L. C., Menelaou, A., Pulit, S. L., van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., van Leeuwen, E. M., van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E.-W., Kattenberg, M., Dijkstra, M., Byelas, H., van Setten, J., van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marschall, T., Schönhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., van Enckevort, D., Mei, H., Koval, V., Moed, M. H., van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekman, M., de Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Study, L. C., Platteel, M., Veldink, J. H., van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., den Dunnen, J. T., Stoneking, M., de Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Pe'er, I., Slagboom, P. E., van Duijn, C. M., Boomsma, D. I., van Ommen, G.-J.-B., de Bakker, P. I. W., Swertz, M. A., Wijmenga, C., & Genome of the Netherlands Consortium, The (2014). Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nature Genetics, 46(8), 818-825.
DOI    BibTeX   Endnote   
Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution, 75, 143-152.
DOI    BibTeX   Endnote   

Downloads

Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology, 14: 190.
DOI    BibTeX   Endnote   

Downloads

Li, J., Quinque, D., Horz, H.-P., Li, M., Rzhetskaya, M., Raff, J. A., Hayes, M. G., & Stoneking, M. (2014). Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiology, 14: 316.
DOI    BibTeX   Endnote   

Downloads

Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics, 5: 13.
DOI    BibTeX   Endnote   

Downloads

Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications, 5: 4689.
DOI    BibTeX   Endnote   

Downloads

Malaspinas, A.-S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y., Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D., & Willerslev, E. (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology, 24(21), R1035-R1037.
DOI    BibTeX   Endnote   
Oven, M. v., Brauer, S., Choi, Y., Ensing, J., Schiefenhövel, W., Stoneking, M., & Kayser, M. (2014). Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea. European journal of human genetics, 22, 1393-1403.
DOI    BibTeX   Endnote   

2013

Grossmann, T., Vaish, A., Franz, J., Schroeder, R., Stoneking, M., & Friederici, A. D. (2013). Emotional voice processing: Investigating the role of genetic variation in the serotonin transporter across development. PLoS One, 8(7): e68377.
DOI    BibTeX   Endnote   

Downloads

Barbieri, C., Vicente, M., Rocha, J., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013). Ancient substructure in early mtDNA lineages of southern Africa. American Journal of Human Genetics, 92, 285-292.
DOI    BibTeX   Endnote   
Duggan, A. T., & Stoneking, M. (2013). A highly unstable recent mutation in human mtDNA. American Journal of Human Genetics, 92(2), 279-284.
DOI    BibTeX   Endnote   
Pugach, I., Delfin, F., Gunnarsdóttir, E., Kayser, M., & Stoneking, M. (2013). Genome-wide data substantiate Holocene gene flow from India to Australia. Proceedings of the National Academy of Sciences of the United States of America, 110(5), 1803-1808.
DOI    BibTeX   Endnote   
Li, J., Nasidze, I., Quinque, D., Li, M., Horz, H.-P., Andre, C., Garriga, R. M., Halbwax, M., Fischer, A., & Stoneking, M. (2013). The saliva microbiome of Pan and Homo. BMC Microbiology, 13: 204.
DOI    BibTeX   Endnote   

Downloads

Pugach, I., & Stoneking, M. (2013). Reply to Price and Bird: No inconsistency between the date of gene flow from India and the Australian archaeological record. Proceedings of the National Academy of Sciences of the United States of America, 110(32): E2949.
DOI    BibTeX   Endnote   
Stoneking, M. (2013). Mitochondrial genome: Evolution. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley.
DOI    BibTeX   Endnote   
Stoneking, M., & Harvati, K. (2013). Early Old World migrations of Homo sapiens: human biology. In The Encyclopedia of Global Human Migration, P. I. Hoboken, NJ: Wiley-Backwell.
DOI    BibTeX   Endnote   

2012

Theunert, C., Tang, K., Lachmann, M., Hu, S., & Stoneking, M. (2012). Inferring the history of population size change from genome-wide SNP data. Molecular Biology and Evolution, 29(2), 3653-3667.
DOI    BibTeX   Endnote   
Jinam, T. A., Hong, L.-C., Phipps, M. E., Stoneking, M., Ameen, M., Edo, J., HUGO Pan-Asian SNP Consortium, & Saitou, N. (2012). Evolutionary history of continental South East Asians: "Early Train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Molecular Biology and Evolution, 29(11), 3513-3527.
DOI    BibTeX   Endnote   
Stoneking, M. (2012). Genetic evidence concerning the origins and dispersals of modern humans. In M. H. Crawford, & B. C. Campbell (Eds.), Causes and Consequences of Human Migration: An Evolutionary Perspective (pp. 11-20). Cambridge: Cambridge Univ. Pr.
BibTeX   Endnote   
Pickrell, J. K., Patterson, N., Berthold, F., Barbieri, C., Gerlach, L., Gueldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., Lipson, M., Loh, P.-R., Lachance, J., Mountain, J., Bustamante, C. D., Berger, B., Tishkoff, S. A., Henn, B. M., Stoneking, M., Reich, D., & Pakendorf, B. (2012). The genetic prehistory of southern Africa. Nature Communications, 3: 1143.
DOI    BibTeX   Endnote   

Downloads

Xu, S., & Stoneking, M. (2012). Reply to Denham and Donohue: Asian-Papuan genetic admixture is in excellent agreement with Austronesian dispersal in eastern Indonesia. Proceedings of the National Academy of Sciences of the United States of America, 109(39): E2578.
DOI    BibTeX   Endnote   
de Filippo, C., Bostoen, K., Stoneking, M., & Pakendorf, B. (2012). Bringing together linguistic and genetic evidence to test the Bantu expansion. Proceedings of the Royal Society B: Biological Sciences, 279(1741), 3256-3263.
DOI    BibTeX   Endnote   
Ballantyne, K. N., van Oven, M., Ralf, A., Stoneking, M., Mitchell, R. J., van Oorschot, R. A., & Kayser, M. (2012). MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania. Forensic Science International: Genetics, 6(4), 425-436.
DOI    BibTeX   Endnote   
Quillen, E. E., Bauchet, M., Bigham, A. W., Delgado-Burbano, M. E., Faust, F. X., Klimentidis, Y. C., Mao, X., Stoneking, M., & Shriver, M. D. (2012). OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans. Human Genetics, 131(7), 1073-1080.
DOI    BibTeX   Endnote   
Li, M., & Stoneking, M. (2012). A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology, 13(5): R34.
DOI    BibTeX   Endnote   

Downloads

Kenny, E. E., Timpson, N. J., Sikora, M., Yee, M.-C., Moreno-Estrada, A., Eng, C., Huntsman, S., Burchard, E. G., Stoneking, M., Bustamante, C. D., & Myles, S. (2012). Melanesian blond hair is caused by an amino acid change in TYRP1. Science, 336(6081), 554-554.
DOI    BibTeX   Endnote   
Li, J., Menard, V., Benish, R. L., Jurevic, R. J., Guillemette, C., Stoneking, M., Zimmerman, P. A., & Mehlotra, R. K. (2012). Worldwide variation in human drug-metabolism enzyme genes CYP2B6 and UGT2B7: implications for HIV/AIDS treatment. Pharmacogenomics, 13(5), 555-570.
DOI    BibTeX   Endnote   
Xu, S., Pugach, I., Stoneking, M., Kayser, M., Jina, L., & The HUGO Pan-Asian SNP Consortium (2012). Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579.
DOI    BibTeX   Endnote   
Delfin, F., Myles, S., Choi, Y., Hughes, D., Illek, R., van Oven, M., Pakendorf, B., Kayser, M., & Stoneking, M. (2012). Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands. Molecular Biology and Evolution, 29(2), 545-564.
DOI    BibTeX   Endnote   
Li, M., Schröder, R., Ko, A.-M.-S., & Stoneking, M. (2012). Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs. Nucleic Acids Research, 40(18): e137.
DOI    BibTeX   Endnote   

Downloads

2011

de Filippo, C., Barbieri, C., Whitten, M., Mpoloka, S. W., Gunnarsdóttir, E. D., Bostoen, K., Nyambe, T., Beyer, K., Schreiber, H., Knijff, P. d., Luiselli, D., Stoneking, M., & Pakendorf, B. (2011). Y-chromosomal variation in sub-saharan Africa: Insights into the history of Niger-Congo groups. Molecular Biology and Evolution, 28(3): msq312v1, pp. 1255-1269.
DOI    BibTeX   Endnote   
Delfin, F., Salvador, J. M., Calacal, G. C., Perdigon, H. B., Tabbada, K. A., Villamor, L. P., Halos, S. C., Gunnarsdóttir, E., Myles, S., Hughes, D. A., Xu, S., Jin, L., Lao, O., Kayser, M., Hurles, M. E., Stoneking, M., & Ungria, M. C. A. d. (2011). The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups. European Journal of Human Genetics, 19(2), 224-230.
DOI    BibTeX   Endnote   
Gross, A., Tönjes, A., Kovacs, P., Veeramah, K. R., Ahnert, P., Roshyara, N. R., Gieger, C., Rueckert, I.-M., Loeffler, M., Stoneking, M., Wichmann, H.-E., Novembre, J., Stumvoll, M., & Scholz, M. (2011). Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays. BMC Genetics, 12: 67.
DOI    BibTeX   Endnote   

Downloads

Grossmann, T., Johnson, M. H., Vaish, A., Hughes, D. A., Quinque, D., Stoneking, M., & Friederici, A. D. (2011). Genetic and neural dissociation of individual responses to emotional expressions in human infants. Developmental Cognitive Neuroscience, 1(1), 57-66.
DOI    BibTeX   Endnote   
Gunnarsdóttir, E. D., Li, M., Bauchet, M., Finstermeier, K., & Stoneking, M. (2011). High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research, 21(1), 1-11.
DOI    BibTeX   Endnote   
Gunnarsdóttir, E. D., Nandineni, M. R., Li, M., Myles, S., Gil, D., Pakendorf, B., & Stoneking, M. (2011). Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2: 228.
DOI    BibTeX   Endnote   
Li, J., Zhang, L., Zhou, H., Stoneking, M., & Tang, K. (2011). Global patterns of genetic diversity and signals of natural selection for human ADME genes. Human Molecular Genetics, 20(3), 528-540.
DOI    BibTeX   Endnote   
Myles, S., Lea, R. A., Ohashi, J., Chambers, G. K., Weiss, J. G., Hardouin, E., Engelken, J., Macartney-Coxson, D. P., Eccles, D. A., Naka, I., Kimura, R., Inaoka, T., Matsumura, Y., & Stoneking, M. (2011). Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans. BMC Medical Genetics, 12(1): 10, pp. 1-7.
DOI    BibTeX   Endnote   

Downloads

Nasidze, I., & Stoneking, M. (2011). Microbiome diversity in human saliva. In F. J. d. Bruijn (Ed.), Handbook of Molecular Microbial Ecology II: Metagenomics in Different Habitats (pp. 335-339). New York: Wiley.
BibTeX   Endnote   
Nasidze, I., Li, J., Schroeder, R., Creasey, J. L., Li, M., & Stoneking, M. (2011). High diversity of the saliva microbiome in Batwa pygmies. PLoS ONE, 6(8): e23352.
DOI    BibTeX   Endnote   

Downloads

Oota, H., & Stoneking, M. (2011). Effect of human migration on genome diversity in East Asia. In Y. Takezawa (Ed.), Racial representations in Asia (pp. 173-187). Kyoto: Kyoto Univ. Press.
BibTeX   Endnote   
Pugach, I., Matveyev, R., Wollstein, A., Kayser, M., & Stoneking, M. (2011). Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biology, 12(2): R19, pp. 1-18.
DOI    BibTeX   Endnote   
Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A.-M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., Saitou, N., Wollstein, A., Kayser, M., Pääbo, S., & Stoneking, M. (2011). Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. The American Journal of Human Genetics, 89(4), 516-528.
DOI    BibTeX   Endnote   

Downloads

Schönberg, A., Theunert, C., Li, M., Stoneking, M., & Nasidze, I. (2011). High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences. European Journal of Human Genetics, 19(9), 988-994.
DOI    BibTeX   Endnote   
Stoneking, M. (2011). Was wir von Spucke lernen können: Diversität im Mikrobiom des menschlichen Speichels. Max-Planck-Gesellschaft: Jahrbuch 2011. Retrieved from https://www.mpg.de/1262166/Mikrobiom_Speichel?c=1070738.
BibTeX   Endnote   

Downloads

Stoneking, M., & Krause, J. (2011). Learning about human population history from ancient and modern genomes. Nature Reviews Genetics, 12(9), 603-614.
DOI    BibTeX   Endnote   

2010

Athanasiadis, G., Esteban, E., Gayà-Vidal, M., Dugoujon, J.-M., Moschonas, N., Chaabani, H., Bissar-Tadmouri, N., Harich, N., Stoneking, M., & Moral, P. (2010). Different evolutionary histories of the coagulation factor VII gene in human populations? Annals of Human Genetics, 74(1), 34-45.
DOI    BibTeX   Endnote   
Athanasiadis, G., González-Pérez, E., Esteban, E., Dugoujon, J.-M., Stoneking, M., & Moral, P. (2010). The Mediterranean Sea as a barrier to gene flow: Evidence from variation in and around the F7 and F12 genomic regions. BMC Evolutionary Biology, 10: 84.
DOI    BibTeX   Endnote   

Downloads

de Filippo, C., Heyn, P., Barham, L., Stoneking, M., & Pakendorf, B. (2010). Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia. American Journal of Physical Anthropology, 141(3), 382-394.
DOI    BibTeX   Endnote   
Li, M., Schönberg, A., Schaefer, M., Schroeder, R., Nasidze, I., & Stoneking, M. (2010). Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. The American Journal of Human Genetics, 87(2), 237-249.
DOI    BibTeX   Endnote   
Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060.
DOI    BibTeX   Endnote   

Downloads

Stoneking, M., & Delfin, F. S. (2010). The human genetic history of East Asia: Weaving a complex tapestry. Current Biology, 20(4), R188-R193.
DOI    BibTeX   Endnote   
Wollstein, A., Lao, O., Becker, C., Brauer, S., Trent, R. J., Nürnberg, P., Stoneking, M., & Kayser, M. (2010). Demographic history of Oceania inferred from genome-wide data. Current Biology, 20, 1983-1992.
DOI    BibTeX   Endnote   

2009

Balaresque, P., Parkin, E. J., Roewer, L., Carvalho-Silva, D. R., Mitchell, R. J., Oorschot, R. A. H. v., Henke, J., Stoneking, M., Nasidze, I., Wetton, J., Knijff, P. d., Tyler-Smith, C., & Jobling, M. A. (2009). Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. International Journal of Legal Medicine, 123(1), 15-23.
DOI    BibTeX   Endnote   
Hillmer, A. M., Freudenberg, J., Myles, S., Herms, S., Tang, K., Hughes, D. A., Brockschmidt, F. F., Ruan, Y., Stoneking, M., & Nöthen, M. M. (2009). Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Human Genetics, 126(2), 223-232.
DOI    BibTeX   Endnote   
Hughes, D. A., Hinney, A., Brumm, H., Wermter, A.-K., Biebermann, H., Hebebrand, J., & Stoneking, M. (2009). Increased constraints on MC4R during primate and human evolution. Human Genetics, 124(6), 633-647.
DOI    BibTeX   Endnote   
Hughes, D. A., Jastroch, M., Stoneking, M., & Klingenspor, M. (2009). Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis. BMC Evolutionary Biology, 9: 4.
DOI    BibTeX   Endnote   

Downloads

López Herráez, D., Bauchet, M., Tang, K., Theunert, C., Pugach, I., Li, J., Nandineni, M. R., Gross, A., Scholz, M., & Stoneking, M. (2009). Genetic variation and recent positive selection in worldwide human populations: Evidence from nearly 1 million SNPs. PLoS ONE, 4(11): e7888.
DOI    BibTeX   Endnote   

Downloads

Mona, S., Grunz, K. E., Brauer, S., Pakendorf, B., Castrì, L., Sudoyo, H., Marzuki, S., Barnes, R. H., Schmidtke, J., Stoneking, M., & Kayser, M. (2009). Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Molecular Biology and Evolution, 26(8), 1865-1877.
DOI    BibTeX   Endnote   
Moreno-Estrada, A., Tang, K., Sikora, M., Marquès-Bonet, T., Casals, F., Navarro, A., Calafell, F., Bertranpetit, J., Stoneking, M., & Bosch, E. (2009). Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution, 26(10), 2285-2297.
DOI    BibTeX   Endnote   
Myles, S., Stoneking, M., & Timpson, N. (2009). An assessment of the portability of ancestry informative markers between human populations. BMC Medical Genomics, 2: 45.
DOI    BibTeX   Endnote   

Downloads

Nasidze, I., Li, J., Quinque, D., Tang, K., & Stoneking, M. (2009). Global diversity in the human salivary microbiome. Genome Research, 19(4), 636-643.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Li, J., Li, M., Tang, K., & Stoneking, M. (2009). Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches. Analytical Biochemistry, 391(1), 64-68.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., Asadova, P., Zhukova, O., & Stoneking, M. (2009). MtDNA and Y-chromosome variation in the Talysh of Iran and Azerbaijan. American Journal of Physical Anthropology, 138(1), 82-89.
DOI    BibTeX   Endnote   
Roewer, L., Willuweit, S., Stoneking, M., & Nasidze, I. (2009). A Y-STR database of Iranian and Azerbaijanian minority populations. Forensic Science International: Genetics, 4(1), e53-e55.
DOI    BibTeX   Endnote   
Ryan, A. W., Hughes, D. A., Tang, K., Kelleher, D. P., Ryan, T., McManus, R., & Stoneking, M. (2009). Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus. European Journal of Human Genetics, 17(2), 219-227.
DOI    BibTeX   Endnote   
Stoneking, M. (2009). Humans as second orangutans: sense or nonsense? BioEssays, 31(10), 1010-1012.
DOI    BibTeX   Endnote   

2008

Balaresque, P., Bowden, G. R., Parkin, E. J., Omran, G. A., Heyer, E., Quintana-Murci, L., Roewer, L., Stoneking, M., Nasidze, I., Carvalho-Silva, D. R., Tyler-Smith, C., de Knijff, P., & Jobling, M. A. (2008). Dynamic nature of the proximal AZFc region of the human Y chromosome: Multiple independent deletion and duplication events revealed by microsatellite analysis. Human Mutation, 29(10), 1171-1180.
DOI    BibTeX   Endnote   
Bryk, J., Hardouin, E., Pugach, I., Hughes, D. A., Strotmann, R., Stoneking, M., & Myles, S. (2008). Positive selection in East Asians for an EDAR allele that enhances NF-kappaB activation. PLoS ONE, 3(5): e2209.
DOI    BibTeX   Endnote   

Downloads

Fechner, A., Quinque, D., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Willuweit, S., Zhukova, O., Roewer, L., Stoneking, M., & Nasidze, I. (2008). Boundaries and clines in the West Eurasian Y-chromosome landscape: Insights from the European part of Russia. American Journal of Physical Anthropology, 137(1), 41-47.
DOI    BibTeX   Endnote   
Güldemann, T., & Stoneking, M. (2008). A historical appraisal of clicks: A linguistic and genetic population perspective. Annual Review of Anthropology, 37, 93-109.
DOI    BibTeX   Endnote   
Herráez, D. L., & Stoneking, M. (2008). High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping. Analytical Biochemistry, 383(2), 329-331.
DOI    BibTeX   Endnote   
Hughes, D. A., Tang, K., Strotmann, R., Schöneberg, T., Prenen, J., Nilius, B., & Stoneking, M. (2008). Parallel selection on TRPV6 in human populations. PLoS One, 3(3): e1686.
DOI    BibTeX   Endnote   

Downloads

Kayser, M., Choi, Y., Oven, M. v., Mona, S., Brauer, S., Trent, R. J., Suarkia, D., Schiefenhövel, W., & Stoneking, M. (2008). The impact of the Austronesian expansion: Evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia. Molecular Biology and Evolution, 25(7), 1362-1374.
DOI    BibTeX   Endnote   
Kayser, M., Lao, O., & Stoneking, M. (2008). Reply to Hedrick: East Asian and Melanesian ancestry in Polynesians. American Journal of Human Genetics, 83(1), 140-142.
DOI    BibTeX   Endnote   
Kayser, M., Lao, O., Saar, K., Brauer, S., Wang, X., Nürnberg, P., Trent, R. J., & Stoneking, M. (2008). Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. American Journal of Human Genetics, 82(1), 194-198.
DOI    BibTeX   Endnote   
Mehlotra, R. K., Mattera, G., Bockarie, M. J., Maguire, J. D., Baird, J. K., Sharma, Y. D., Alifrangis, M., Dorsey, G., Rosenthal, P. J., Fryauff, D. J., Kazura, J. W., Stoneking, M., & Zimmerman, P. A. (2008). Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy, 52(6), 2212-2222.
DOI    BibTeX   Endnote   
Myles, S., Davison, D., Barrett, J., Stoneking, M., & Timpson, N. (2008). Worldwide population differentiation at disease-associated SNPs. BMC Medical Genomics, 1: 22.
DOI    BibTeX   Endnote   

Downloads

Myles, S., Tang, K., Somel, M., Green, R. E., Kelso, J., & Stoneking, M. (2008). Identification and analysis of genomic regions with large between-population differentiation in humans. Annals of Human Genetics, 72(1), 99-110.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2008). Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Annals of Human Genetics, 72(2), 241-252.
DOI    BibTeX   Endnote   
Roewer, L., Willuweit, S., Krüger, C., Nagy, M., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Zhukova, O., Stoneking, M., & Nasidze, I. (2008). Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. International Journal of Legal Medicine, 122(3), 219-223.
DOI    BibTeX   Endnote   
Stoneking, M. (2008). Human origins - the molecular perspective. EMBO Reports, 9(Supplement 1), S46-S50.
DOI    BibTeX   Endnote   
Stoneking, M. (2008). Mitochondrial genome: Evolution. In Encyclopedia of Life Sciences (ELS). Chichester: Wiley.
DOI    BibTeX   Endnote   

2007

Cordaux, R., Srikanta, D., Lee, J., Stoneking, M., & Batzer, M. A. (2007). In search of polymorphic alu insertions with restricted geographic distributions. Genomics, 90(1), 154-158.
DOI    BibTeX   Endnote   
DaRe, J. T., Mehlotra, R. K., Michon, P., Mueller, I., Reeder, J. C., Sharma, Y. D., Stoneking, M., & Zimmerman, P. A. (2007). Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea. Malaria Journal, 6: 34.
DOI    BibTeX   Endnote   
Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M. T. P., Younghusband, B., Young, T., Marshall, I., Willerslev, E., Stoneking, M., & Poinar, H. N. (2007). A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA. American Journal of Physical Anthropology, 132(4), 594-604.
DOI    BibTeX   Endnote   
Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D. A., Rohland, N., Pilli, E., Longo, L., Condemi, S., de la Rasilla, M., Fortea, J., Rosas, A., Stoneking, M., Schöneberg, T., Bertranpetit, J., & Hofreiter, M. (2007). A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, 318(5855), 1453-1455.
DOI    BibTeX   Endnote   
Myles, S., Hradetzky, E., Engelken, J., Lao, O., Nürnberg, P., Trent, R. J., Wang, X., Kayser, M., & Stoneking, M. (2007). Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians. European Journal of Human Genetics, 15, 584-589.
DOI    BibTeX   Endnote   
Myles, S., Hughes, D., & Stoneking, M. (2007). Detecting local selection in human populations. In C. Santos, & M. Lima (Eds.), Recent Advances in Molecular Biology and Evolution: Applications to Biological Anthropolgy (pp. 65-81). Trivandrum, India: Research Signpost.
BibTeX   Endnote   
Myles, S., Somel, M., Tang, K., Kelso, J., & Stoneking, M. (2007). Identifying genes underlying skin pigmentation differences among human populations. Human Genetics, 120(5), 613-621.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Udina, I., Kunizheva, S., & Stoneking, M. (2007). The Gagauz, a linguistic enclave, are not a genetic isolate. Annals of Human Genetics, 71(3), 379-389.
DOI    BibTeX   Endnote   
Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., & Stoneking, M. (2007). Mating patterns amongst Siberian reindeer herders: Inferences from mtDNA and Y-chromosomal analyses. American Journal of Physical Anthropology, 133(3), 1013-1027.
DOI    BibTeX   Endnote   

Downloads

Roewer, L., Krüger, C., Willuweit, S., Nagy, M., Rodig, H., Kokshunova, L., Rothämel, T., Kravchenko, S. A., Jobling, M. A., Stoneking, M., & Nasidze, I. (2007). Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Science International, 173(2-3), 204-209.
DOI    BibTeX   Endnote   
Rootsi, S., Zhivotovsky, L. A., Baldovic, M., Kayser, M., Kutuev, I. A., Khusainova, R., Bermisheva, M. A., Gubina, M., Fedorova, S. A., Ilumäe, A.-M., Khusnutdinova, E., Voevoda, M. I., Osipova, L. P., Stoneking, M., Lin, A. A., Ferak, V., Parik, J., Kivisild, T., Underhill, P. A., & Villems, R. (2007). A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. European Journal of Human Genetics, 15(2), 204-211.
DOI    BibTeX   Endnote   
Stoneking, M., & Kayser, M. (2007). Genealogical markers: mtDNA and the Y-chromosome. In Michael P. Weiner, Stacey B. Gabriel, J. Claiborne Stephens (Ed.), Genetic Variation: A Laboratory Manual (pp. 421-436). New York: Cold Spring Harbor Laborarory Press.
BibTeX   Endnote   
Stoneking, M., & Nasidze, I. (2007). Reply to Parson: The art of reading sequence electropherograms. Annals of Human Genetics, 71(2), 279-280.
DOI    BibTeX   Endnote   
Tang, K., Thornton, K. R., & Stoneking, M. (2007). A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biology, 5(7): e171.
DOI    BibTeX   Endnote   

Downloads

2006

Mehlotra, R. K., Stoneking, M., & Zimmerman, P. A. (2006). Paleoparasite populations from archived sera: Insights into chloroquine drug resistance in Papua New Guinea - Reply to Chan et al. Journal of Infectious Diseases, 194(7), 1024-1025.
BibTeX   Endnote   
Hammer, M. F., Karafet, H., Park, H.-S., Omoto, K., Harihara, S., Stoneking, M., & Horai, S. (2006). Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics, 51, 47-58.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Cordaux, R., Casto, A., Lao, O., Zhivotovsky, L. A., Moyse-Faurie, C., Rutledge, R., Schiefenhövel, W., Gil, D., Lin, A. A., Underhill, P. A., Oefner, P. J., Trent, R. J., & Stoneking, M. (2006). Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution, 23(11), 2234-2244.
DOI    BibTeX   Endnote   

Downloads

Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2006). Concomitant replacement of language and mtDNA in South Caspian populations of Iran. Current Biology, 16(7), 668-673.
DOI    BibTeX   Endnote   
Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., Danilova, A. P., Protod´jakonov, A., & Stoneking, M. (2006). Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Human Genetics, 120(3), 334-353.
DOI    BibTeX   Endnote   

Downloads

Quinque, D., Kittler, R., Kayser, M., Stoneking, M., & Nasidze, I. (2006). Evaluation of saliva as a source of human DNA for population and association studies. Analytical Biochemistry, 353(2), 272-277.
DOI    BibTeX   Endnote   
Stoneking, M. (2006). Genetic evidence for our recent African ancestry. In Soodyall, Himla (Ed.), Prehistory of Africa (pp. 24-36). Johannesburg: Ball.
BibTeX   Endnote   
Stoneking, M. (2006). Investigating the health of our ancestors: Insights from the evolutionary genetic consequences of prehistoric diseases. In Bromage, Timothy (Ed.), Integrative Approaches to Human Health and Evolution: proceedings.. (pp. 106-114). Amsterdam [u.a.]: Elsevier.
BibTeX   Endnote   
Stoneking, M., & Nasidze, I. (2006). The patient is not dead yet: Premature autopsy of an mtDNA data set. Annals Human Genetics, 70(3), 327-331.
DOI    BibTeX   Endnote   

2005

Mehlotra, R. K., Mattera, G., Bhatia, K., Reeder, J. C., Stoneking, M., & Zimmerman, P. A. (2005). Insight into the early spread of chloroquine resistant Plasmodium falciparum infections in Papua New Guinea. Journal of Infectious Diseases, 192(12), 2174-2179.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L., & Stoneking, M. (2005). Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology, 128(4), 846-854.
DOI    BibTeX   Endnote   
Stoneking, M., Pakendorf, B., & Oota, H. (2005). Authors' reply. PLoS Biol, 3(8): e270, pp. 1354-1355.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Ozturk, M., Bendukidze, N., & Stoneking, M. (2005). MtDNA and Y-chromosome variation in Kurdish groups. Annals of Human Genetics, 69(4), 401-412.
DOI    BibTeX   Endnote   
Hamilton, G., Stoneking, M., & Excoffier, L. (2005). Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences of the United States of America, 102(21), 7476-7480.
DOI    BibTeX   Endnote   
Oota, H., Pakendorf, B., Weiss, G., von Haeseler, A., Pookajorn, S., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2005). Recent origin and cultural reversion of a hunter–gatherer group. PLoS Biology, 3(3): e71.
DOI    BibTeX   Endnote   

Downloads

Pakendorf, B., & Stoneking, M. (2005). Mitochondrial DNA and human evolution. Annual Review of Genomics and Human Genetics, 6, 165-183.
DOI    BibTeX   Endnote   
Stoneking, M. (2005). Gene, Geographie und Sprache. In Günter Hauska (Ed.), Gene, Sprachen und ihre Evolution: wie verwandt sind die Menschen - wie verwandt sind ihre Sprachen? (pp. 133-140). Regensburg: Universitätsverlag Regensburg.
BibTeX   Endnote   

2004

Erler, A., Stoneking, M., & Kayser, M. (2004). Development of Y-chromosomal microsatellite markers for non-human primates. Molecular Ecology, 13(10), 2921-2930.
DOI    BibTeX   Endnote   
Kasperaviciute, D., Kucinskas, V., & Stoneking, M. (2004). Y chromosome and mitochondrial DNA variation in Lithuanians. Annals of Human Genetics, 68(5), 438-452.
DOI    BibTeX   Endnote   
Cordaux, R., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2004). Y-STR haplotypes from eight south Indian groups based on five loci. Journal of Forensic Sciences, 49(4), 847-848.
DOI    BibTeX   Endnote   
Cordaux, R., Aunger, R., Bentley, G. R., Nasidze, I., Sirajuddin, S. M., & Stoneking, M. (2004). Independent origins of Indian caste and tribal paternal lineages. Current Biology, 14(3), 231-235.
DOI    BibTeX   Endnote   
Cordaux, R., Edwin, D., Vishwanathan, H., & Stoneking, M. (2004). Genetic evidence for the demic diffusion of agriculture to India. Science, 304(5674), 1125-1125.
DOI    BibTeX   Endnote   
Cordaux, R., Weiss, G., Saha, N., & Stoneking, M. (2004). The northeast Indian passageway: A barrier or corridor for human migrations? Molecular Biology and Evolution, 21(8), 1525-1533.
DOI    BibTeX   Endnote   
Hughes, D. A., Cordaux, R., & Stoneking, M. (2004). Humans. Current Biology, 14, R367-R369.
DOI    BibTeX   Endnote   
Kayser, M., Kittler, R., Erler, A., Hedman, M., Lee, A. C., Mohyuddin, A., Mehdi, S. Q., Rosser, Z. H., Stoneking, M., Jobling, M. A., Sajantila, A., & Tyler-Smith, C. (2004). A comprehensive survey of human Y-chromosomal microsatellites. American Journal of Human Genetics, 74(6), 1183-1197.
DOI    BibTeX   Endnote   
Nasidze, I., Ling, E. Y., Quinque, D., Dupanloup, I., Cordaux, R., Rychkov, S., Naumova, O., Zhukova, O., Sarraf-Zadegan, N., Naderi, G. A., Asgary, S., Sardas, S., Farhud, D. D., Sarkisian, T., Asadov, C., Kerimov, A., & Stoneking, M. (2004). Mitochondrial DNA and Y-chromosome variation in the Caucasus. Annals of Human Genetics, 68(3), 205-221.
DOI    BibTeX   Endnote   
Nasidze, I., Quinque, D., Dupanloup, I., Rychkov, S., Naumova, O., Zhukova, O., & Stoneking, M. (2004). Genetic evidence concerning the origins of South and North Ossetians. Annals of Human Genetics, 68(6), 588-599.
DOI    BibTeX   Endnote   
Vishwanathan, H., Deepa, E., Cordaux, R., Stoneking, M., Usha Rani, M. V., & Majumder, P. P. (2004). Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers. Annals Human Genetics, 68(2), 128-138.
DOI    BibTeX   Endnote   

2003

Stoneking, M. (2003). Widespread prehistoric human cannibalism: Easier to swallow? Trends in Ecology & Evolution, 18(10), 489-490.
DOI    BibTeX   Endnote   
Kittler, R., Kayser, M., & Stoneking, M. (2003). Molecular evolution of Pediculus humanus and the origin of clothing. Current Biology, 13(16), 1414-1417.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., Shen, P. D., Oefner, P. J., Tommaseo-Ponzetta, M., & Stoneking, M. (2003). Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. American Journal of Human Genetics, 72(2), 281-302.
DOI    BibTeX   Endnote   
Cordaux, R., & Stoneking, M. (2003). South Asia: the Andamanese and the genetic evidence for an "early" human dispersal out of Africa. American Journal of Human Genetics, 72(6), 1586-1590.
DOI    BibTeX   Endnote   
Cordaux, R., Saha, N., Bentley, G. R., Aunger, A., Sirajuddin, S. M., & Stoneking, M. (2003). Mitochondrial DNA analysis reveals diverse histories of tribal populations of India. European Journal of Human Genetics, 11(3), 253-264.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., & Stoneking, M. (2003). A genome scan to detect candidate regions influenced by local natural selection in human populations. Molecular Biology and Evolution, 20(6), 893-900.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Schädlich, H., Prinz, M., Batzer, M. A., Zimmerman, P. A., Boatin, B. A., & Stoneking, M. (2003). Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Research, 13, 624-634.
DOI    BibTeX   Endnote   
Kittler, R., Erler, A., Brauer, S., Stoneking, M., & Kayser, M. (2003). Apparent intra-chromosomal exchange on the human Y chromosome explained by population history. European Journal of Human Genetics, 11, 304-314.
DOI    BibTeX   Endnote   
Nasidze, I., Sarkisian, T., Kerimov, A., & Stoneking, M. (2003). Testing hypotheses of language replacement in the Caucasus: Evidence from the Y-chromosome. Human Genetics, 112(3), 255-261.
DOI    BibTeX   Endnote   
Nasidze, I., Schädlich, H., & Stoneking, M. (2003). Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci. Forensic Science International, 137(1), 85-93.
DOI    BibTeX   Endnote   
Pakendorf, B., Wiebe, V., Tarskaia, L. A., Spitsyn, V. A., Soodyall, H., Rodewald, A., & Stoneking, M. (2003). Mitochondrial DNA evidence for admixed origins of central Siberian populations. American Journal of Physical Anthropology, 120(3), 211-224.
DOI    BibTeX   Endnote   
Stoneking, M. (2003). Mitochondrial genome: Evolution. In David N. Cooper (Ed.), Nature encyclopedia of the human genome: vol. 3 (GEN - MIT) (pp. 1019-1023). London [et al]: Nature Publishing Group.
BibTeX   Endnote   

2002

Oota, H., Kitano, T., Jin, F., Yuasa, I., Wang, L., Ueda, S., Saitou, N., & Stoneking, M. (2002). Extreme mtDNA homogeneity in continental Asian populations. American Journal of Physical Anthropology, 118(2), 146-153.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Willuweit, S., Schädlich, H., Batzer, M. A., Zawacki, J., Prinz, M., Roewer, L., & Stoneking, M. (2002). Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for US populations. Journal of Forensic Sciences, 47(3), 513-519.
DOI    BibTeX   Endnote   
Romualdi, C., Balding, D., Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Stoneking, M., Batzer, M. A., & Barbujani, G. (2002). Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research, 12(4), 602-612.
DOI    BibTeX   Endnote   
Pakendorf, B., Morar, B., Tarskaia, L. A., Kayser, M., Soodyall, H., Rodewald, A., & Stoneking, M. (2002). Y-chromosomal evidence for a strong reduction in male population size of Yakuts. Human Genetics, 110(2), 198-200.
DOI    BibTeX   Endnote   
Kittler, R., Stoneking, M., & Kayser, M. (2002). A whole genome amplification method to generate long fragments from low quantities of genomic DNA. Analytical Biochemistry, 300(2), 237-244.
DOI    BibTeX   Endnote   
Nasidze, I., & Stoneking, M. (2002). Genetic variation among human populations from the Caucasus. In Shumny, V. K.; Kolchanov, N. A.; Fedotov, A. M. (Ed.), The First Workshop on Information Techologies Application to Problems of Biodiversity and Dynamics (pp. 272-278). Novosibirsk, Russia: Russian Academy od Sciences.
BibTeX   Endnote   
Presser, J., Deverell, A., Redd, A., & Stoneking, M. (2002). Tasmanian aborigines and DNA. Papers and Proceedings of the the Royal Society of Tasmania, 136, 35-38.
BibTeX   Endnote   

2001

Begovich, A. B., Moonsamy, P. V., Mack, S. J., Barcellos, L. F., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Konenkov, V. I., Sartakova, M. L., Titanji, V. P. K., Rickards, O., & Klitz, W. (2001). Genetic variability and linkage disequilibrium within the DP region: Analysis of 15 different populations. Tissue Antigens, 57(5), 424-439.
DOI    BibTeX   Endnote   
Donnelly, P., Foley, R., Stoneking, M., Deininger, P. L., & Batzer, M. A. (2001). Alu insertion polymorphisms in humans: A review. In Genes, Fossils and Behaviour (pp. 111-121). Amsterdam: IOS Press.
BibTeX   Endnote   
Justice, C. M., Den, Z., Nguyen, S. V., Stoneking, M., Deininger, P. L., Batzer, M. A., & Keats, B. J. B. (2001). Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution, 52(3), 232-238.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., & Stoneking, M. (2001). Independent histories of human Y chromosomes from Melanesia and Australia. American Journal of Human Genetics, 68(1), 173-190.
DOI    BibTeX   Endnote   
Melton, T., Clifford, S., Kayser, M., Nasidze, I., Batzer, M. A., & Stoneking, M. (2001). Diversity and heterogeneity in mitochondrial DNA of North American populations. Journal of Forensic Sciences, 46(1), 46-52.
DOI    BibTeX   Endnote   
Nasidze, I., & Stoneking, M. (2001). Mitochondrial DNA variation and language replacements in the Caucasus. Proceedings of the Royal Society of London B, 268(1472), 1197-1206.
DOI    BibTeX   Endnote   
Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Batzer, M. A., & Stoneking, M. (2001). Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. European Journal of Human Genetics, 9, 267-272.
DOI    BibTeX   Endnote   
Oota, H., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2001). Human mtDNA and Y-chromosome variation is correlated with matrilocal vs. patrilocal residence. Nature Genetics, 29, 20-21.
DOI    BibTeX   Endnote   
Stone, A. C., Starrs, J. E., & Stoneking, M. (2001). Mitochondrial DNA analysis of the presumptive remains of Jesse James. Journal of Forensic Sciences, 46(1), 173-176.
DOI    BibTeX   Endnote   
Stoneking, M. (2001). Single nucleotide polymorphisms: From the evolutionary past.. Nature, 409, 821-822.
DOI    BibTeX   Endnote   
Tishkoff, S. A., Varkonyi, R., Cahinhinan, N., Abbes, S., Argyropoulos, G., Destro-Bisol, G., Drousiotou, A., Dangerfield, B., Lefranc, G., Loiselet, J., Piro, A., Stoneking, M., Tagarelli, A., Tagarelli, G., Touma, E. H., Williams, S. M., & Clark, A. G. (2001). Haplotype diversity and linkage disequilibrium at human G6PD recent origin of alleles that confer malarial resistance. Science, 293(5529), 455-462.
DOI    BibTeX   Endnote   

2000

Di Benedetto, G., Nasidze, I., Stenico, M., Nigro, L., Krings, M., Lanzinger, M., Vigilant, L., Stoneking, M., Pääbo, S., & Barbujani, G. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. European Journal of Human Genetics, 8(9), 669-677.
BibTeX   Endnote   

Downloads

Begovich, A. B., Klitz, W., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Rickards, O., Titanji, V. P. K., Konenkov, V. I., & Sartakova, M. L. (2000). HLA-DQ haplotypes in 15 different populations. In M. Kasahara (Ed.), The Major Histocompatibility Complex: Evolution, Structure and Function (pp. 412-426). Tokyo: Springer.
BibTeX   Endnote   
Clark, V. J., Sivendren, S., Saha, N., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2000). The 9-bp deletion between the mitochondrial lysine tRNA and COII genes in tribal populations of India. Human Biology, 72(2), 273-285.
BibTeX   Endnote   
Comas, D., Calafell, F., Benchemsi, N., Helal, A., Lefranc, G., Stoneking, M., Batzer, M. A., Bertranpetit, J., & Sajantila, A. (2000). Alu insertion polymorphisms in Northwest Africa and the Iberian Peninsula: Evidence for a strong genetic boundary through the Gibraltar Straits. Human Genetics, 107(4), 312-319.
DOI    BibTeX   Endnote   
Kayser, M., Brauer, S., Weiss, G., Underhill, P. A., Roewer, L., Schiefenhövel, W., & Stoneking, M. (2000). Melanesian origin of Polynesian Y chromosomes. Current Biology, 10, 1237-1246.
BibTeX   Endnote   
Kayser, M., Roewer, L., Hedman, M., Henke, L., Henke, J., Brauer, S., Kruger, C., Krawczak, M., Nagy, M., Dobosz, T., Szibor, R., de Knijff, P., Stoneking, M., & Sajantila, A. (2000). Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome revealed by direct observation in father/son pairs. American Journal of Human Genetics, 66(5), 1580-1588.
DOI    BibTeX   Endnote   
Kumar, S., Hedrick, P. W., Dowling, T., & Stoneking, M. (2000). Questioning evidence for recombination in human mitochondrial DNA. Science, 288(5473), 1931.
DOI    BibTeX   Endnote   
Kumar, S., Nasidze, I., Walimbe, S. R., & Stoneking, M. (2000). Brief communication: Discouraging prospects for ancient DNA from India. American Journal of Physical Anthropology, 113(1), 129-133.
DOI    BibTeX   Endnote   
Mack, S. J., Bugawan, T. L., Moonsamy, P. V., Erlich, J. A., Trachtenberg, E., Paik, Y. K., Begovich, A. B., Saha, N., Beck, H. P., Stoneking, M., & Erlich, H. A. (2000). Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens, 55(5), 383-400.
DOI    BibTeX   Endnote   
Sheen, F., Sherry, S. T., Risch, G. M., Robichaux, M., Nasidze, I., Stoneking, M., Batzer, M. A., & Swergold, G. D. (2000). Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition. Genome Research, 10(10), 1496-1508.
DOI    BibTeX   Endnote   
Stoneking, M. (2000). Hypervariable sites in the mtDNA control region are mutational hotspots. American Journal of Human Genetics, 67(4), 1029-1032.
DOI    BibTeX   Endnote   
Tishkoff, S. A., Pakstis, A. J., Stoneking, M., Kidd, J. R., Destro-Bisol, G., Sajantila, A., Deinard, A. S., Sirugo, G., Jenkins, T., Kidd, K. K., & Clark, A. G. (2000). Short tandem-repeat polymorphism/Alu haplotype variation at the PLAT locus: Implications for modern human origins. American Journal of Human Genetics, 67(4), 901-925.
DOI    BibTeX   Endnote   

1999

Krings, M., Salem, A.-e.-H., Bauer, K., Geisert, H., Malek, A. K., Chaix, L., Simon, C., Welsby, D., Di Rienzo, A., Utermann, G., Sajantila, A., Pääbo, S., & Stoneking, M. (1999). mtDNA analysis of Nile River Valley populations: A genetic corridor or a barrier to migration? American Journal of Human Genetics, 64(4), 1166-1176.
DOI    BibTeX   Endnote   
Bugawan, T. L., Mack, S. J., Stoneking, M., Saha, N., Beck, H. P., & Erlich, H. A. (1999). HLA class I allele distributions in six Pacific/Asian populations: evidence of selection at the HLA-A locus. Tissue Antigens, 53, 311-319.
BibTeX   Endnote   
Deininger, P. L., Sherry, S. T., Risch, G. M., Donaldson, C., Robichaux, M., Soodyall, H., Jenkins, T., Sheen, S., Swergold, G. D., Stoneking, M., & Batzer, M. A. (1999). Interspersed repeat insertion polymorphisms for studies of human molecular anthropology. In Surinder S. Papiha, Ranjan Deka, and Ranajit Chakraborty (Ed.), Genomic diversity: applications in human population genetics (pp. 201-212). New York: Kluwer Academic/Plenum Publishers.
BibTeX   Endnote   
Nasidze, I., & Stoneking, M. (1999). Construction of larger-size sequencing templates from degraded DNA. BioTechniques, 27, 480-488.
BibTeX   Endnote   
Redd, A. J., & Stoneking, M. (1999). Peopling of Sahul: mitochondrial DNA variation in Australian aboriginal and Papua New Guinean populations. American Journal of Human Genetics, 65, 808-828.
BibTeX   Endnote   
Stone, A. C., & Stoneking, M. (1999). Analysis of ancient DNA from a prehistoric Amerindian cemetery. Philosophical Transactions of the Royal Society of London B, 354, 153-159.
BibTeX   Endnote   
Szabó, Z., Levi-Minzi, S. A., Christiano, A. M., Struminger, C., Stoneking, M., Batzer, M. A., & Boyd, C. D. (1999). Sequential Loss of Two Neighboring Exons of the Tropoelastin Gene During Primate Evolution. Journal of Molecular Evolution, 49(5), 664-671.
DOI    BibTeX   Endnote   

1998

Jazin, E., Soodyall, H., Jalonen, P., Lindholm, E., Stoneking, M., & Gyllenstein, U. (1998). Mitochondrial mutation rate revisited: hot spots and polymorphism. Nature Genetics, 18(2), 109-110.
DOI    BibTeX   Endnote   
Melton, T., Clifford, S., Martinson, J., Batzer, M. A., & Stoneking, M. (1998). Genetic evidence for the proto-Austronesian homeland in Asia: mtDNA and nuclear DNA variation in Taiwanese aboriginal tribes. American Journal of Human Genetics, 63(6), 1807-1823. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1377653.
BibTeX   Endnote   
Novick, G. E., Novick, C. C., Yunis, J., Yunis, E., Mayolo, P. A., Scheer, W. D., Deininger, P. L., Stoneking, M., York, D., Batzer, M. A., & Herrera, R. J. (1998). Polymorphic Alu insertions and the Asian origin of native American populations. Human Biology, 70(1), 23-39.
BibTeX   Endnote   
Stone, A. C., & Stoneking, M. (1998). mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. American Journal of Human Genetics, 62(5), 1153-1170. Retrieved from http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=1377095.
BibTeX   Endnote   
Stoneking, M. (1998). Women on the move. Nature Genetics, 20(3), 219-220.
DOI    BibTeX   Endnote   
Zietkiewicz, E., Yotova, V., Jarnik, M., Korab-Laskowska, M., Kidd, K. K., Modiano, D., Scozzari, R., Stoneking, M., Tishkoff, S. A., Batzer, M. A., & Labuda, D. (1998). Genetic Structure of the Ancestral Population of Modern Humans. Journal of Molecular Evolution, 47(2), 146-155.
DOI    BibTeX   Endnote   

1997

Zigtkiewicz, E., Yotova, V., Jarnik, M., Korab-Laskowska, M., Kídd, K. K., Modiano, D., Scozzari, R., Stoneking, M., Tishkoff, S., Batzer, M., & Labuda, D. (1997). Nuclear DNA diversity in worldwide distributed human populations. Gene, 205(1-2), 161-171.
DOI    BibTeX   Endnote   
Batzer, M. A., Sherry, S. T., Deininger, P. L., & Stoneking, M. (1997). Response: Alu repeats and human evolution. Journal of Molecular Evolution, 45(1), 7-8.
DOI    BibTeX   Endnote   
Krings, M., Stone, A. C., Schmitz, R. W., Krainitzki, H., Stoneking, M., & Pääbo, S. (1997). Neandertal DNA sequences and the origin of modern humans. Cell, 90(1), 19-30.
DOI    BibTeX   Endnote   

Downloads

Melton, T., Ginther, C., Sensabaugh, G., Soodyall, G., & Stoneking, M. (1997). Extent of heterogeneity in mitochondrial DNA of sub-Saharan African populations. Journal of Forensic Sciences, 42(4), 582-592.
DOI    BibTeX   Endnote   
Melton, T., Wilson, M., Batzer, M. A., & Stoneking, M. (1997). Extent of heterogeneity in mitochondrial DNA of European populations. Journal of Forensic Sciences, 42(3), 437-446.
DOI    BibTeX   Endnote   
Sherry, S. T., Harpending, H. C., Batzer, M. A., & Stoneking, M. (1997). Alu Evolution in Human Populations: Using the Coalescent to Estimate Effective Population Size. Genetics, 147(4), 1977-1982. Retrieved from http://www.genetics.org/cgi/content/abstract/147/4/1977.
BibTeX   Endnote   
Soodyall, H., Jenkins, T., Mukherjee, A., Du Toit, E., Roberts, D. F., & Stoneking, M. (1997). The founding mitochondrial DNA lineages of Tristan da Cunha Islanders. American Journal of Physical Anthropology, 104(2), 157-166.
DOI    BibTeX   Endnote   
Stoneking, M. (1997). Multiplex DNA typing of short-tandem-repeat loci on the Y chromosome. Biological Chemistry, 378(8), 923-934.
DOI    BibTeX   Endnote   
Stoneking, M. (1997). Recent African origin of human mitochondrial DNA: review of the evidence and current status of the hypothesis. In Peter Donnelly, Simon Tavaré (Ed.), Progress in population genetics and human evolution (pp. 1-13). New York: Springer.
BibTeX   Endnote   
Stoneking, M. (1997). The human genome project and molecular anthropology. Genome Research, 7(2), 1-13.
DOI    BibTeX   Endnote   
Stoneking, M., Fontius, J. J., Clifford, S. L., Soodyall, H., Arcot, S. S., Saha, N., Jenkins, T., Tahir, M. A., Deininger, P. L., & Batzer, M. A. (1997). Alu Insertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa. Genome Research, 7(11), 1061-1071.
DOI    BibTeX   Endnote   
Zucman-Rossi, J., Batzer, M. A., Stoneking, M., Delattre, O., & Thomas, G. (1997). Interethnic polymorphism of EWS intron 6: genome plasticity mediated by Alu retroposition and recombination. Human Genetics, 99(3), 357-363.
DOI    BibTeX   Endnote   

1996

Stoneking, M. and H. Soodyall. 1996. Human evolution and the mitochondrial genome. Current Opinion in Genetics and Development 6:731-736.

Erlich, H. A., T. F. Bergström, M. Stoneking, and U. Gyllensten. 1996. HLA sequence polymorphism and the origin of humans. Science 274:1552-1554.

Thomas, R., H. Zischler, S. Pääbo, and M. Stoneking. 1996. Novel mitochondrial DNA insertion polymorphism and its usefulness for human population studies. Human Biology 68:847-854. 

Stone, A. C. and M. Stoneking. 1996. Genetic analyses of an 8000 year-old native American skeleton. Ancient Biomolecules 1:83-87.

Soodyall, H., T. Jenkins, R. Hewitt, A. Krause, and M. Stoneking. 1996. The peopling of Madagascar. In: Molecular Biology and Human Diversity, A. J. Boyce and C. G. N. Mascie-Taylor (eds.), Cambridge University Press, Cambridge, pp.156-170.

Melton, T. and M. Stoneking. 1996. Extent of heterogeneity in mitochondrial DNA of ethnic Asian populations. Journal of Forensic Sciences 41:591-602.

Stoneking, M. 1996. Mitochondrial DNA heteroplasmy: out of the closet. Biol. Chem. 377:603-604.

Stoneking, M. 1996. Mitochondrial DNA variation and human evolution. In: Human Genome Evolution, M. Jackson, T. Strachan, and G. Dover (eds.), BIOS Scientific Publishers, Oxford, pp. 263-281.

Bonatto, S. L., A. J. Redd, F. M. Salzano, and M. Stoneking. 1996. Lack of ancient Polynesian-Amerindian contact. American Journal of Human Genetics 59:253-255.

Knight, A., M. A. Batzer, M. Stoneking, H. K. Tiwari, W. D. Scheer, R. J. Herrera, and P. L. Deininger. 1996. DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement. Proceedings of the National Academy of Sciences USA 93:4360-4364.

Soodyall, H., L. Vigilant, A. V. Hill, M. Stoneking, and T. Jenkins. 1996. Mitochondrial DNA control region sequence variation suggests multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans. American Journal of Human Genetics 58:595-608.

Nachman, M. W., W. M. Brown, M. Stoneking, and C. F. Aquadro. 1996. Non-neutral mitochondrial DNA variation in humans and chimpanzees. Genetics 142:953-963.

Batzer, M. A., S. S. Arcot, J. W. Phinney, M. Alegria-Hartman, D. H. Kass, S. M. Milligan, C. Kimpton, P. Gill, M. Hochmeister, P. A. Ioannou, R. J. Herrera, D. A. Boudreau, W. D. Scheer, B J. B. Keats, P. L. Deininger, and M. Stoneking. 1996. Genetic variation of recent Alu insertions in human populations. Journal of Molecular Evolution 42:22-29.

Bonnichsen, R., M. T. Beatty, M. D. Turner, and M. Stoneking. 1996. What can be learned from hair? A hair record from the Mammoth Meadow locus, southwestern Montana. In: Prehistoric Mongoloid Dispersals, T. Akazawa and E. J. E. Szathmary (eds.), Oxford University Press, Oxford, pp. 201-213.

Stone, A. C., G. R. Milner, S. Pääbo, and M. Stoneking. 1996. Sex determination of ancient human skeletons using DNA. American Journal of Physical Anthropology 99:231-238.

1995

Novick, G. E., C. C. Novick, J. Yunis, E. Yunis, K. Martinez, G. G. Duncan, G. M. Troup, P. L. Deininger, M. Stoneking, M. A. Batzer, and R. J. Herrera. 1995. Polymorphic human specific Alu insertions as markers for human identification. Electrophoresis 16:1596-1601.

Stoneking, M. 1995. Ancient DNA: How do you know when you have it and what can you do with it? American Journal of Human Genetics 57:1259-1262.

Soodyall, H., M. Stoneking, and T. Jenkins. 1995. ‘Polynesian’ mtDNA in the Malagasy. Nature Genetics 10:377-378.

Melton, T., R. Peterson, A. Redd, N. Saha, A. S. M. Sofro, J. Martinson, and M. Stoneking. 1995. Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis. American Journal of Human Genetics 57:403-414.

Redd, A. J., N. Takezaki, S. T. Sherry, S. T. McGarvey, A. S. M. Sofro, and M. Stoneking. 1995. Evolutionary history of the COII/tRNAlys intergenic 9 b.p. deletion in human mitochondrial DNAs from the Pacific. Molecular Biology and Evolution 12:604-615.

Gill, P., C. Kimpton, R. Aliston-Greiner, K. Sullivan, M. Stoneking, T. Melton, J. Nott, S. Barritt, R. Roby, M. Holland, and V. Weedn. 1995. Establishing the identity of Anna Anderson Manahan. Nature Genetics 9:9-10.

1994

Connor, A. and M. Stoneking. 1994. Assessing ethnicity from human mitochondrial DNA types determined by hybridization with sequence-specific oligonucleotides. Journal of Forensic Sciences 39:1360-1371.

Batzer, M. A., M. Stoneking, M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ionnou, W. D. Scheer, R. J. Herrera, and P. L. Deininger. 1994. African origin of human-specific polymorphic Alu insertions. Proceedings of the National Academy of Sciences USA 91: 12288-12292.

Weiss, K. M., A. V. Buchanan, C. Daniel, and M. Stoneking. 1994. Optimizing utilization of DNA from rare or archival anthropological samples. Human Biology 66: 789-804.

Sherry, S. T., A. R. Rogers, H. Harpending, H. Soodyall, T. Jenkins, and M. Stoneking. 1994. Mismatch distributions of mtDNA reveal recent human population expansions. Human Biology 66: 761-775.

Cheng, S., R. Higuchi, and M. Stoneking. 1994. Complete mitochondrial genome amplification. Nature Genetics 7: 350-351.

Stoneking, M. 1994. In defense of “Eve” - a response to Templeton's critique. American Anthropologist 96: 131-141.

Stoneking, M. 1994. Mitochondrial DNA and human evolution.  Journal of Bioenergetics and Biomembranes 26: 241-249.

1993

Batzer, M. A., M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ioannou, D. A. Boudreau, W. D. Scheer, R. J. Herrera, M. Stoneking, and P. L. Deininger. 1993. Alu repeats as markers for human population genetics. In: Proceedings of the Fourth International Symposium on Human Identification, Promega Publishing, Madison, Wisconsin, pp. 49-57.

Stone, A. C. and M. Stoneking. 1993. Ancient DNA from a pre-Columbian Amerindian population. American Journal of Physical Anthropology 92: 463-471.

Wilson, M. R., M. Stoneking, M. M. Holland, J. A. DiZinno, and B. Budowle. 1993. Guidelines for the use of mitochondrial DNA sequencing in forensic science. Crime Laboratory Digest 20: 68-77.

Hutchin, T., I. Haworth, K. Higashi, N. Fischel-Ghodsian, M. Stoneking, N. Saha, K. Arnos, and G. Cortopassi. 1993. A molecular basis for human hypersensitivity to aminoglycoside antibiotics. Nucleic Acids Research 21: 4174-4179.

Stoneking, M. 1993. DNA and recent human evolution. Evolutionary Anthropology 2: 60-73.

Harpending, H. C., S. T. Sherry, A. R. Rogers, and M. Stoneking. 1993. The genetic structure of ancient human populations. Current Anthropology 34: 483-496.

Buchanan, A. V., S. T. Sherry, K. M. Weiss, S. T. McGarvey, J. V. Neel, and M. Stoneking. 1993. Extraction of DNA from frozen red blood cells. Human Biology 65: 647-654.

1992

Stoneking, M., S. T. Sherry, and L. Vigilant. 1992. Geographic origin of human mitochondrial DNA revisited. Systematic Biology 41: 384-391.

Moonsamy, P. V., V. C. Suraj, T. L. Bugawan, R. K. Saiki, M. Stoneking, J. Roudier, M. M. A. Magzoub, A. V. S. Hill, and A. B. Begovich. 1992. Genetic diversity within the HLA Class II region: ten new DPB1 alleles and their population distribution. Tissue Antigens 40: 153-157.

Stoneking, M., S. T. Sherry, A. J. Redd, and L. Vigilant. 1992. New approaches to dating suggest a recent age for the human mtDNA ancestor. Phil. Trans. R. Soc. Lond. B 337: 167-175.

Perna, N. T., M. A. Batzer, P. L. Deininger, and M. Stoneking. 1992. Alu insertion polymorphism: a new type of marker for human population studies. Human Biology 64: 641-648. 

Hedges, S. B., S. Kumar, K. Tamura, and M. Stoneking. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255: 737-739.

1991

Wilson, A.C., M. Stoneking, and R. L. Cann. 1991. Ancestral geographic states and the peril of parsimony. Systematic Zoology 40: 363-365.

Vigilant, L., M. Stoneking, H. Harpending, K. Hawkes, and A. C. Wilson. 1991. African populations and the evolution of human mitochondrial DNA. Science 253: 1503-1507.

Stoneking, M., D. Hedgecock, R. G. Higuchi, L. Vigilant, and H. A. Erlich. 1991. Population variation of human mitochondrial DNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes. American Journal of Human Genetics 48: 370-382.

1990

Stoneking, M. 1990. Departure of human mtDNA variation from neutral expectations: an alternative explanation. Journal of Molecular Evolution 31: 343-346.

Helmuth, R., N. Fildes, E. Blake, M.C. Luce, J. Chimera, R. Madej, C. Gorodezky, M. Stoneking, N. Schmill, W. Klitz, R. Higuchi, and H. A. Erlich. 1990. HLA-DQ allele and genotype frequencies in various human populations, determined by using enzymatic amplification and oligonucleotide probes. American Journal of Human Genetics 47: 515-523.

Stoneking, M., L.B. Jorde, K. Bhatia, and A.C. Wilson. 1990. Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics 124: 717-733.

1989

Stoneking, M. and A.C. Wilson. 1989. Mitochondrial DNA. In: The Colonization of the Pacific: A Genetic Trail, A.V.S. Hill and S.W. Serjeantson (eds.), Oxford University Press, Oxford, pp. 215-245.

Stoneking, M. and R.L. Cann. 1989. African origin of human mitochondrial DNA. In: The Human Revolution: Behavioural and Biological Perspectives on the Origins of Modern Humans, P. Mellars and C. Stringer (eds.), Edinburgh University Press, Edinburgh, pp. 17-30.

1988

Vigilant, L., M. Stoneking, and A.C. Wilson. 1988. Conformational mutation in human mtDNA detected by direct sequencing of enzymatically amplified DNA. Nucleic Acids Research 16: 5945-5955.

1987

Wilson, A.C., M. Stoneking, R.L. Cann, E.M. Prager, S.D. Ferris, L.A. Wrischnik, and R.G. Higuchi. 1987. Mitochondrial clans and the age of our common mother. In: Human Genetics, Proceedings of the Seventh International Congress, Berlin 1986, F. Vogel and K. Sperling (eds.), Springer-Verlag, Berlin, pp. 158-164.

Wrischnik, L.A., R.G. Higuchi, M. Stoneking, H.A. Erlich, N. Arnheim, and A.C. Wilson. 1987. Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Research 15: 529-542.

Cann, R.L., M. Stoneking, and A.C. Wilson. 1987. Disputed African origin of human populations. Nature 329: 111-112.

Cann, R.L., M. Stoneking, and A.C. Wilson. 1987. Mitochondrial DNA and human evolution. Nature 325: 31-36.

1986

Whittam, T.S., A.G. Clark, M. Stoneking, R.L. Cann, and A.C. Wilson. 1986. Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proceedings of the National Academy of Science USA 83: 9611-9615.

Stoneking, M., K. Bhatia, and A.C. Wilson. 1986. Rate of sequence divergence estimated from restriction maps of mitochondrial DNAs from Papua New Guinea. Cold Spring Harbor Symposia on Quantitative Biology 51: 433-439.

Stoneking, M., K. Bhatia, and A.C. Wilson. 1986. Mitochondrial DNA variation in Eastern Highlanders of Papua New Guinea. In: Genetic Variation and its Maintenance, D.F. Roberts and G. DeStefano (eds.), Cambridge University Press, Cambridge, pp. 87-100.

1985

Wilson, A.C., R.L. Cann, S.M. Carr, M. George, U.B. Gyllensten, K. Helm-Bychowski, R.G. Higuchi, S.R. Palumbi, E.M. Prager, R.D. Sage, and M. Stoneking. 1985. Mitochondrial DNA in relation to evolutionary genetics. Biological Journal of the Linnaean Society 26: 375-400.

1981

Stoneking, M., B. May, and J.E. Wright. 1981. Loss of duplicate gene expression in salmonids: evidence for a null allele polymorphism at the duplicate aspartate aminotransferase loci in brook trout (Salvelinus fontinalis). Biochemical Genetics 19: 1063-1077.

Stoneking, M., D.J. Wagner, and A.C. Hildebrand. 1981. Genetic evidence suggesting subspecific differences between northern and southern populations of brook trout (Salvelinus fontinalis). Copeia 1981: 810-819.

1980

Wright, J.E., B. May, M. Stoneking, and G.M. Lee. 1980. Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis. Journal of Heredity 71: 223-228.

May, B., M. Stoneking, and J.E. Wright. 1980. Joint segregation of biochemical loci in Salmonidae: II. Linkage associations from a hybridized Salvelinus genome (S. namaycush X S. fontinalis). Genetics 95: 707-726.

1979

Stoneking, M., B. May, and J.E. Wright. 1979. Genetic variation, inheritance, and quaternary structure of malic enzyme in brook trout (Salvelinus fontinalis). Biochemical Genetics 17: 599-619.

May, B., J.E. Wright, and M. Stoneking. 1979. Joint segregation of biochemical loci in Salmonidae: results from experiments with Salvelinus and review of the literature on other species. Journal of the Fisheries Research Board of Canada 36: 1114-1128.

May, B., M. Stoneking, and J.E. Wright. 1979. Joint segregation of malate dehydrogenase and diaphorase loci in brown trout (Salmo trutta). Transactions of the American Fisheries Society 108: 373-377.