Human Population History (Mark Stoneking)
The group was a member of the Genetics Department from 1999 to 2022.
We were using the methods of modern molecular genetics to investigate questions that anthropologists are interested in concerning the origin, relationships, history, structure and migration patterns of human populations. Depending on the question, we analyzed variation in mitochondrial DNA, Y-chromosome DNA and/or autosomal DNA in either contemporary populations or ancient specimens.
As the group ended with my retirement in June 2022, now seems like an opportune time to acknowledge the diversity of our members, visitors, and assistants, and how much they have contributed to the achievements and success of the Human Population History group:
Former Members of the Group
- Alvis, Leonardo Arias
- Barbieri, Chiara
- Bajić, Vladimir
- Bauchet, Marc
- Brauer, Silke
- Cordaux, Richard
- Delfin, Frederick
- Duggan, Ana
- Gunnarsdóttir, Ellen Dröfn
- Hughes, David
- Hübner, Alexander
- Kayser, Manfred
- Ko, Albert
- Li, Jing
- Li, Mingkun
- Lippold, Sebastian
- López Herráez, David
- Macholdt, Enrico
- Myles, Sean
- Nasidze, Vano
- Ni, Shengyu
- Oliveira, Sandra
- Oota, Hiroki
- Pakendorf, Brigitte
- Pugach, Irina
- Quinque, Dominique
- Rodriguez, Jae Joseph Russell B.
- Ryan, Tony
- Tang, Kun
- Theunert, Christoph
- Wachsmuth, Manja
Publications
2024
Thao, D. H., Dinh, T. H., Mitsunaga, S., Duy, L. D., Phuong, N. T., Anh, N. P., Anh, N. T., Duc, B. M., Hue, H. T. T., Ha, N. H., Ton, N. D., Hübner, A., Pakendorf, B., Stoneking, M., Inoue, I., Duong, N. T., & Hai, N. V. (2024). Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam. PLoS One, 19(6): e0304964. |
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Woravatin, W., Wongkomonched, R., Tassaneeyakul, W., Stoneking, M., Makarawate, P., & Kutanan, W. (2024). Complete mitochondrial genomes of patients from Thailand with cardiovascular diseases. PLoS One, 19(7): e0307036. |
Open Access2023
Oliveira, S., Fehn, A.-M., Amorim, B., Stoneking, M., & Rocha, J. (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38): eadh3822. |
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Stoneking, M., Arias, L., Liu, D., Oliveira, S., Pugach, I., & Rodriguez, J. (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences, 120(4): e22094751. |
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Woravatin, W., Stoneking, M., Srikummool, M., Kampuansai, J., Arias, L., & Kutanan, W. (2023). South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture. PLoS One, 18: e0291547. |
2022
Alva, O., Leroy, A., Heiske, M., Pereda-Loth, V., Tisseyre, L., Boland, A., Deleuze, J.-F., Rocha, J., Schlebusch, C., Fortes-Lima, C., Stoneking, M., Radimilahy, C., Rakotoarisoa, J.-A., Letellier, T., & Pierron, D. (2022). The loss of biodiversity in Madagascar is contemporaneous with major demographic events. Current Biology, 32, 4997-5007, e1-e5. |
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Liu, D., Peter, B. M., Schiefenhövel, W., Kayser, M., & Stoneking, M. (2022). Assessing human genome-wide variation in the Massim region of Papua New Guinea and implications for the Kula trading tradition. Molecular Biology and Evolution, 39(8): msac165. |
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Liu, Q., Iqbal, M. F., Yaqub, T., Firyal, S., Zhao, Y., Stoneking, M., & Li, M. (2022). The transmission of human mitochondrial DNA in four-generation pedigrees. Human Mutation, 43(9), 1259-1267. |
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Oliveira, S., Nägele, K., Carlhoff, S., Pugach, I., Koesbardiati, T., Hübner, A., Meyer, M., Oktaviana, A. A., Takenaka, M., Katagiri, C., Murti, D. B., Putri, R. S., Mahirta, Petchey, F., Higham, T., Higham, C., O’Connor, S., Hawkins, S., Kinaston, R., Bellwood, P., Ono, R., Powell, A., Krause, J., Posth, C., & Stoneking, M. (2022). Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nature Ecology & Evolution, 6, 1024-1034. |
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Rodriguez, J., Cuales, J. M. D., Herrera, M. J. B., Zubiri, L. A. M., Muallil, R. N., Ishmael, A. I., Jimenez, E. B., Stoneking, M., & De Ungria, M. C. A. (2022). Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago. Frontiers in Genetics, 13: 901515. |
2021
Choin, J., Mendoza-Revilla, J., Arauna, L. R., Cuadros-Espinoza, S., Cassar, O., Larena, M., Ko, A.-M.-S., Harmant, C., Laurent, R., Verdu, P., Laval, G., Boland, A., Olaso, R., Deleuze, J.-F., Valentin, F., Ko, Y.-C., Jakobsson, M., Gessain, A., Excoffier, L., Stoneking, M., Patin, E., & Quintana-Murci, L. (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), 583-589. |
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Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2021). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31. |
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Guo, S., Huang, S., Jiang, X., Hu, H., Han, D., Moreno, C. S., Fairbrother, G. L., hughes, D. A., Stoneking, M., & Khaitovich, P. (2021). Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn. BMC Genomics, 22: 286. |
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Kutanan, W., Liu, D., Kampuansai, J., Srikummool, M., Srithawong, S., Shoocongdej, R., Sangkhano, S., Ruangchai, S., Pittayaporn, P., Arias, L., & Stoneking, M. (2021). Reconstructing the human genetic history of mainland Southeast Asia: Insights from genome-wide data from Thailand and Laos. Molecular Biology and Evolution, 38(8), 3459-3477. |
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Matsumae, H., Ranacher, P., Savage, P. E., Blasi, D. E., Currie, T. E., Koganebuchi, K., Nishida, N., Sato, T., Tanabe, H., Tajima, A., Brown, S., Stoneking, M., Shimizu, K. K., Oota, H., & Bickel, B. (2021). Exploring correlations in genetic and cultural variation across language families in northeast Asia. Science Advances, 7(34): eabd9223. |
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Pakendorf, B., & Stoneking, M. (2021). The genomic prehistory of peoples speaking Khoisan languages. Human Molecular Genetics, 30(2), R49-R55. |
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Pugach, I., Hübner, A., Hung, H.-c., Meyer, M., Carson, M. T., & Stoneking, M. (2021). Ancient DNA from Guam and the peopling of the Pacific. Proceedings of the National Academy of Sciences, 118(1): e202211211. |
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Vernot, B., Zavala, E. I., Gómez-Olivencia, A., Jacobs, Z., Slon, V., Mafessoni, F., Romagné, F., Pearson, A., Petr, M., Sala, N., Pablos, A., Aranburu, A., de Castro, J. M. B., Carbonell, E., Li, B., Krajcarz, M. T., Krivoshapkin, A. I., Kolobova, K. A., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Grote, S., Essel, E., López Herráez, D., Nagel, S., Nickel, B., Richter, J., Schmidt, A., Peter, B., Kelso, J., Roberts, R. G., Arsuaga, J.-L., & Meyer, M. (2021). Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments. Science, eabf1667. |
2020
Gunnarsdottir, E. D., & Stoneking, M. (2020). Genetic Landscape of Present-Day Hunter-Gatherer Groups. In T. Güldemann ( |
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Hübner, A. (2020). Exploring aspects of tissue specificity of human mtDNA heteroplasmy. PhD Thesis, Universität, Leipzig. |
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Kutanan, W., Shoocongdej, R., Srikummool, M., Hübner, A., Suttipai, T., Srithawong, S., Kampuansai, J., & Stoneking, M. (2020). Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand. European Journal of Human Genetics, 28, 1563-1579. |
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Liu, D., Duong, N. T., Ton, N. D., Van Phong, N., Pakendorf, B., Van Hai, N., & Stoneking, M. (2020). Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity. Molecular Biology and Evolution, 37(9): msaa099, pp. 2503-2519. |
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Pedro, N., Brucato, N., Fernandes, V., André, M., Saag, L., Pomat, W., Besse, C., Boland, A., Deleuze, J.-F., Clarkson, C., Sudoyo, H., Metspalu, M., Stoneking, M., Cox, M. P., Leavesley, M., Pereira, L., & Ricaut, F.-X. (2020). Papuan mitochondrial genomes and the settlement of Sahul. Journal of Human Genetics, 65(875), 887. |
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Semo, A., Gayà-Vidal, M., Fortes-Lima, C., Alard, B., Oliveira, S., Almeida, J., Prista, A., Damasceno, A., Fehn, A., Schlebusch, C., & Rocha, J. (2020). Along the Indian Ocean coast: Genomic variation in Mozambique provides new insights into the Bantu expansion. Molecular Biology and Evolution, 37(2), 406-416. |
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Telford, M., Hughes, D. A., Juan, D., Stoneking, M., Navarro, A., & Santpere, G. (2020). Expanding the Geographic Characterisation of Epstein–Barr Virus Variation through Gene-Based Approaches. Microorganisms, 8: 1686. |
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Yang, M. A., Fan, X., Sun, B., Chen, C., Lang, J., Ko, Y.-C., Tsang, C.-h., Chiu, H., Wang, T., Bao, Q., Wu, X., Hajdinjak, M., Ko, A.-M.-S., Ding, M., Cao, P., Yang, R., Liu, F., Nickel, B., Dai, Q., Feng, X., Zhang, L., Sun, C., Ning, C., Zeng, W., Zhao, Y., Zhang, M., Gao, X., Cui, Y., Reich, D., Stoneking, M., & Fu, Q. (2020). Ancient DNA indicates human population shifts and admixture in northern and southern China. Science, 369(6501), 282-288. |
2019
Barbieri, C., Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, 36(12), 2698-2713. |
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Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C. J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M. P., Sudoyo, H., Stoneking, M., Pereira, L., & Ricaut, F.-X. (2019). Evidence of Austronesian genetic lineages in East Africa and South Arabia: Complex dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution, 11(3), 748-758. |
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Bücking, R., Cox, M. P., Hudjashov, G., Saag, L., Sudoyo, H., & Stoneking, M. (2019). Archaic mitochondrial DNA inserts in modern day nuclear genomes. BMC Genomics, 20: 1017. |
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Hübner, A., Wachsmuth, M., Schröder, R., Li, M., Eis-Hübinger, A. M., Madea, B., & Stoneking, M. (2019). Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome. Scientific Reports, 9: 11219. |
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Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, J. S., & Cox, M. P. (2019). Multiple deeply divergent Denisovan ancestries in Papuans. Cell, 117(4), 1010-1021. |
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Kutanan, W., Kampuansai, J., Srikummool, M., Brunelli, A., Ghirotto, S., Arias, L., Macholdt, E., Hübner, A., Schröder, R., & Stoneking, M. (2019). Contrasting paternal and maternal genetic histories of Thai and Lao populations. Molecular Biology and Evolution, 36(7): msz083, pp. 1490-1506. |
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Macholdt, E., Arias, L., Duong, N. T., Ton, N. D., Van Phong, N., Schröder, R., Pakendorf, B., Van Hai, N., & Stoneking, M. (2019). The paternal and maternal genetic history of Vietnamese populations. European Journal of Human Genetics, 28(5), 636-645. |
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Nersisyan, L., Nikoghosyan, M., Arakelyan, A., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others (2019). WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene. Scientific Reports, 9: 18758. |
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Oliveira, S., Hübner, A., Fehn, A.-M., Aço, T., Lages, F., Pakendorf, B., Stoneking, M., & Rocha, J. (2019). The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola. European Journal of Human Genetics, 27, 475-483. |
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Shvetsova, E., Sofronova, A., Monajemi, R., Gagalova, K., Draisma, H. H. M., White, S. J., Santen, G. W. E., Chuva de Sousa Lopes, S. M., Heijmans, B. T., van Meurs, J., Jansen, R., Franke, L., Kielbasa, S. M., den Dunnen, J. T., ´t Hoen, P. A. C., BIOS consortium, GoNL consortium, including authors, Li, M., Stoneking, M., & & others (2019). Skewed X-inactivation is common in the general female population. European Journal of Human Genetics, 27, 455-465. |
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Vai, S., Sarno, S., Lari, M., Luiselli, D., Manzi, G., Gallinaro, M., Mataich, S., Hübner, A., Modi, A., Pilli, E., Tafuri, M. A., Caramelli, D., & di Lernia, S. (2019). Ancestral mitochondrial N lineage from the Neolithic ‘green’ Sahara. Scientific Reports, 9(1): 3530. |
2018
Arias Alvis, L. (2018). Human population history of Northwestern Amazonia, Colombia. PhD Thesis, Univ., Leipzig. |
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Arias, L., Barbieri, C., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia. American Journal of Physical Anthropology, 165(2), 238-255. |
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Arias, L., Schröder, R., Hübner, A., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). Cultural innovations influence patterns of genetic diversity in Northwestern Amazonia. Molecular Biology and Evolution, 35(11), 2719-2735. |
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Bajic, V., Barbieri, C., Hübner, A., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Roewer, L., Purps, J., Stoneking, M., & Pakendorf, B. (2018). Genetic structure and sex-biased gene flow in the history of southern African populations. American Journal of Physical Anthropology, 167(3): 23694, pp. 656-671. |
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Brucato, N., Fernandes, V., Mazières, S., Kusuma, P., Cox, M. P., Ng’ang’a, J. W., Omar, M., Simeone-Senelle, M.-C., Frassati, C., Alshamali, F., Fin, B., Boland, A., Deleuze, J.-F., Stoneking, M., Adelaar, A., Crowther, A., Boivin, N., Pereira, L., Bailly, P., Chiaroni, J., & Ricaut, F.-X. (2018). The Comoros show the earliest Austronesian gene flow into the Swahili corridor. The American Journal of Human Genetics, 102(1), 58-68. |
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Duong, N. T., Macholdt, E., Ton, N. D., Arias, L., Schröder, R., Phong, N. V., Thuy, V. T. B., Ha, N. H., Hue, H. T. T., Xuan, N. T., Oanh, K. T. P., Hien, L. T. T., Hoang, N. H., Pakendorf, B., Stoneking, M., & Hai, N. V. (2018). Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. Scientific Reports, 8: 11651. |
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Henne, K., Schilling, H., Stoneking, M., Conrads, G., & Horz, H.-P. (2018). Sex-specific differences in the occurrence of Fusobacterium nucleatum subspecies and Fusobacterium periodonticum in the oral cavity. Oncotarget, 9(29), 20631-20639. |
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Kutanan, W., Kampuansai, J., Brunelli, A., Ghirotto, S., Pittayaporn, P., Ruangchai, S., Schröder, R., Macholdt, E., Srikummool, M., Kangwanpong, D., Hübner, A., Arias, L., & Stoneking, M. (2018). New insights from Thailand into the maternal genetic history of Mainland Southeast Asia. European Journal of Human Genetics, 26, 898-911. |
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Kutanan, W., Kampuansai, J., Changmai, P., Flegontov, P., Schröder, R., Macholdt, E., Hübner, A., Kangwanpong, D., & Stoneking, M. (2018). Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand. Scientific Reports, 8: 1536. |
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Oliveira, S., Fehn, A.-M., Aço, T., Lages, F., Gayà-Vidal, M., Pakendorf, B., Stoneking, M., & Rocha, J. (2018). Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa. American Journal of Physical Anthropology, 165(3), 518-535. |
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Pierron, D., Heiske, M., Razafindrazaka, H., Pereda-loth, V., Sanchez, J., Alva, O., Arachiche, A., Boland, A., Olaso, R., Deleuze, J.-F., Ricaut, F.-X., Rakotoarisoa, J.-A., Radimilahy, C., Stoneking, M., & Letellier, T. (2018). Strong selection during the last millennium for African ancestry in the admixed population of Madagascar. Nature Communications, 9: 932. |
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Pugach, I., Duggan, A. T., Merriwether, D. A., Friedlaender, F. R., Friedlaender, J. S., & Stoneking, M. (2018). The gateway from near into remote Oceania: New insights from genome-wide data. Molecular Biology and Evolution, 35(4), 871-886. |
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Stoneking, M. (2018). Mitochondrial DNA. In W. Trevathan ( |
2017
Barbieri, C., Sandoval, J. R., Valqui, J., Shimelman, A., Ziemendorff, S., Schröder, R., Geppert, M., Roewer, L., Gray, R., Stoneking, M., Fujita, R., & Heggarty, P. (2017). Enclaves of genetic diversity resisted Inca impacts on population history. Scientific Reports, 7: 17411. |
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Douka, K., Slon, V., Stringer, C., Potts, R., Hübner, A., Meyer, M., Spoor, F., Pääbo, S., & Higham, T. (2017). Direct radiocarbon dating and DNA analysis of the Darra-i-Kur (Afghanistan) human temporal bone. Journal of Human Evolution, 107, 86-93. |
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Francioli, L. C., Cretu-Stancu, M., Garimella, K. V., Fromer, M., Kloosterman, W. P., Genome of the Netherlands consortium, including, Li, M., Stoneking, M., Samocha, K. E., Neale, B. M., Daly, M. J., Banks, E., DePristo, M. A.., & de Bakker, P. I. (2017). A framework for the detection of de novo mutations in family-based sequencing data. European Journal of Human Genetics, 25, 227-223. |
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Jinam, T. A., Phipps, M. E., Aghakhanian, F., Majumder, P. P., Datar, F., Stoneking, M., Sawai, H., Nishida, N., Tokunaga, K., Kawamura, S., Omoto, K., & Saitou, N. (2017). Discerning the origins of the Negritos, first Sundaland people: Deep divergence and archaic admixture. Genome Biology and Evolution, 9(8), 2013-2022. |
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Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(1), 85-98. |
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Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Erratum to: Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(6), 803-803. |
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Pierron, D., Heiske, M., Razafindrazaka, H., Rakoto, I., Rabetokotany, N., Ravololomanga, B., Rakotozafy, L.-M.-A., Rakotomalala, M. M., Razafiarivony, M., Rasoarifetra, B., Raharijesy, M. A., Razafindralambo, L., Ramilisonina,.-., Fanony, F., Lejamble, S., Thomas, O., Abdallah, A. M., Rocher, C., Arachiche, A., Tonaso, L., Pereda-loth, V., Schiavinato, S., Brucato, N., Ricaut, F.-X., Kusuma, P., Sudoyo, H., Ni, S., Boland, A., Deleuze, J.-F., Beaujard, P., Grange, P., Adelaar, S., Stoneking, M., Rakotoarisoa, J.-A., Radimilahy, C., & Letellier, T. (2017). Genomic landscape of human diversity across Madagascar. Proceedings of the National Academy of Sciences of the United States of America, 114(32), E6498-E6506. |
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Sarkar, A., Stoneking, M., & Nandineni, M. R. (2017). Unraveling the human salivary microbiome diversity in Indian populations. PLoS One, 12(9): e0184515. |
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Sohail, M., Vakhrusheva, O. A., Sul, J. H., Pulit, S. L., Francioli, L. C., Genome of the Netherlands Consortium, including, Li, M., Stoneking, M., Alzheimer’s Disease Neuroimaging Initiative, van den Berg, L. H., Veldink, J. H., de Bakker, P. I. W., Bazykin, G. A., Kondrashov, A. S., & Sunyaev, S. R. (2017). Negative selection in humans and fruit flies involves synergistic epistasis. Science, 356(6337), 539-542. |
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Stoneking, M. (2017). An introduction to molecular anthropology. New York [u.a.]: Wiley. |
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Stoneking, M. (2017). Genes, culture, and human evolution. OBM Genetics, 1(2). |
2016
Barbieri, C., Hübner, A., Macholdt, E., Ni, S., Lippold, S., Schröder, R., Mpoloka, S. W., Purps, J., Roewer, L., Stoneking, M., & Pakendorf, B. (2016). Refining the Y chromosome phylogeny with southern African sequences. Human Genetics, 135(5), 541-553. |
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Engelken, J., Espadas, G., Mancuso, F. M., Bonet, N., Scherr, A.-L., Jímenez-Álvarez, V., Codina-Solà, M., Medina-Stacey, D., Spataro, N., Stoneking, M., Calafell, F., Sabidó, E., & Bosch, E. (2016). Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution, 33(3), 738-754. |
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Ko, A.-M.-S. (2016). Early Austronesians and genetic prehistory of Taiwan. PhD Thesis, Universität Leipzig, Leipzig. |
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Li, M., Rothwell, R., Vermaat, M., Wachsmuth, M., Schröder, R., Laros, J. F., Oven, M. v., Bakker, P. I. d., Bovenberg, J. A., Duijn, C. M. v., Ommen, G.-J.-B.-v., Slagboom, P. E., Swertz, M. A., Wijmenga, C., Genome of the Netherlands Consortium, Kayser, M., Boomsma, D. I., Zöllner, S., Knijff, P. d., & Stoneking, M. (2016). Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: Support for a variable-size bottleneck. Genome Research, 26(4), 417-426. |
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Liu, Y.-F., Chiang, S.-L., Lin, C.-Y., Chang, J.-G., Chung, C.-M., Ko, A.-M.-S., Lin, Y.-Z., Lee, C.-H., Lee, K.-W., Chen, M.-K., Hua, C.-H., Tsai, M.-H., Chen, Y.-C., & Ko, Y.-C. (2016). Somatic mutations and genetic variants of NOTCH1 in head and neck squamous cell carcinoma occurrence and development. Scientific Reports, 6: 24014. |
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Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F.-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature, 538(7624), 207-214. |
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Ni, S., & Stoneking, M. (2016). Improvement in detection of minor alleles in next generation sequencing by base quality recalibration. BMC Genomics, 17: 139. |
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Pugach, I., Matveev, R., Spitsyn, V., Makarov, S., Novgorodov, I., Osakovsky, V., Stoneking, M., & Pakendorf, B. (2016). The complex admixture history and recent southern origins of Siberian populations. Molecular Biology and Evolution, 33(7), 1777-1795. |
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Stoneking, M. (2016). Archaic genomes and the peopling of South Asia. In G. R. Schug, & S. R. Walimbe ( |
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Stoneking, M. (2016). The contribution of genetic ancestry from archaic humans to modern humans. In M. Tibayrenc, & F. J. Ayala ( |
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Wachsmuth, M., Hübner, A., Li, M., Madea, B., & Stoneking, M. (2016). Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number. PLoS Genetics, 12(3): e1005939. |
2015
de Boer, M., Tzur, S., van Leeuwen, K., Dencher, P. C., Skorecki, K., Wolach, B., Gavrieli, R., Nasidze, I., Stoneking, M., Tanck, M. W., & Roos, D. (2015). A founder effect for p47phoxTrp193Ter chronic granulomatous disease in Kavkazi Jews. Blood Cells, Molecules, and Diseases, 55(4), 320-327. |
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Fanti, S. D., Barbieri, C., Sarno, S., Sevini, F., Vianello, D., Tamm, E., Metspalu, E., van Oven, M., Hübner, A., Sazzini, M., Franceschi, C., Pettener, D., & Luiselli, D. (2015). Fine dissection of human mitochondrial DNA haplogroup HV lineages reveals paleolithic signatures from European glacial refugia. PLoS One, 10(12): e0144391. |
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Hughes, D. A., Kircher, M., He, Z., Guo, S., Fairbrother, G. L., Moreno, C. S., Khaitovich, P., & Stoneking, M. (2015). Evaluating intra- and inter-individual variation in the human placental transcriptome. Genome Biology, 16: 54. |
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Li, M., Schröder, R., Ni, S., Madea, B., & Stoneking, M. (2015). Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations. Proceedings of the National Academy of Sciences of the United States of America, 112(8), 2491-2496. |
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Macholdt, E., Slatkin, M., Pakendorf, B., & Stoneking, M. (2015). New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa. American Journal of Physical Anthropology, 156(4), 661-664. |
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Palamara, P. F., Francioli, L. C., Wilton, P. R., Genovese, G., Gusev, A., Finucane, H. K., Sankararaman, S., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Sunyaev, S. R., de Bakker, P. I., Wakeley, J., Pe’er, I., & Price, A. L. (2015). Leveraging distant relatedness to quantify human mutation and gene-conversion rates. The American Journal of Human Genetics, 97(6), 775-789. |
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Pugach, I., & Stoneking, M. (2015). Genome-wide insights into the genetic history of human populations. Investigative Genetics, 6: 6. |
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Qin, P., & Stoneking, M. (2015). Denisovan Ancestry in East Eurasian and Native American Populations. Molecular Biology and Evolution, 32(10), 2665-2674. |
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Savage, P. E., Matsumae, H., Oota, H., Stoneking, M., Currie, T. E., Tajima, A., Gillan, M., & Brown, S. (2015). How 'circumpolar' is Ainu music? Musical and genetic perspectives on the history of the Japanese archipelago. Ethnomusicology Forum, 24(3), 443-467. |
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Valverde, G., Zhou, H., Lippold, S., de Filippo, C., Tang, K., Herráez, D. L., Li, J., & Stoneking, M. (2015). A novel candidate region for genetic adaptation to high altitude in Andean populations. PLoS One, 10(5): e0125444. |
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van Leeuwen, E. M., Kanterakis, A., Deelen, P., Kattenberg, M. V., The Genome the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Slagboom, P. E., de Bakker, P. I., Wijmenga, C., Swertz, M. A., Boomsma, D. I., van Duijn, C. M., Karrsen, L. C., & Hottenga, J. J. (2015). Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols, 10(9), 1285-1296. |
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van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., van Dijk, F., Willemsen, G., de Geus, E. J., Milaneschi, Y., Penninx, B. W., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., de Craen, A. J., Uh, H.-W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., The Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Jukema, J. W., van der Harst, P., Sijbrands, E. J., Hottenga, J.-J., Uitterlinden, A. G., Swertz, M. A., van Ommen, G.-J.-B., de Bakker, P. I., Slagboom, P. E., Boomsma, D. I., Wijmenga, C., & van Duijn, C. M. (2015). Genome of the Netherlands population - specific imputations identify an ABCA6 variant associated with cholesterol levels. Nature Communications, 6: 6065. |
2014
Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology, 153(3), 435-448. |
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Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One, 9(6): e9911. |
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Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2014). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences, 281(1774): 20132072. |
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Deelen, P., Menelaou, A., van Leeuwen, E. M., Kanterakis, A., van Dijk, F., Medina-Gomez, C., Francioli, L. C., Hottenga, J. J., Karssen, L. C., Estrada, K., Kreiner-Møller, E., Rivadeneira, F., van Setten, J., Gutierrez-Achury, J., Westra, H.-J., Franke, L., van Enckevort, D., Dijkstra, M., Byelas, H., van Duijn, C. M., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, de Bakker, P. I. W., Wijmenga, C., & Swertz, M. A. (2014). Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Human Genetics, 22(11), 1321-1326. |
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Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics, 22(2), 228-237. |
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Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development, 29, 9-14. |
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Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics, 94(5), 721-733. |
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Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics, 10(2): e1004128. |
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Francioli, L. C., Menelaou, A., Pulit, S. L., van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., van Leeuwen, E. M., van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E.-W., Kattenberg, M., Dijkstra, M., Byelas, H., van Setten, J., van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marschall, T., Schönhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., van Enckevort, D., Mei, H., Koval, V., Moed, M. H., van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekman, M., de Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Study, L. C., Platteel, M., Veldink, J. H., van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., den Dunnen, J. T., Stoneking, M., de Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Pe'er, I., Slagboom, P. E., van Duijn, C. M., Boomsma, D. I., van Ommen, G.-J.-B., de Bakker, P. I. W., Swertz, M. A., Wijmenga, C., & Genome of the Netherlands Consortium, The (2014). Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nature Genetics, 46(8), 818-825. |
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Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging, 6(6), 454-467. |
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Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution, 75, 143-152. |
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Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology, 14: 190. |
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Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics, 94(3), 426-436. |
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Li, J., Quinque, D., Horz, H.-P., Li, M., Rzhetskaya, M., Raff, J. A., Hayes, M. G., & Stoneking, M. (2014). Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiology, 14: 316. |
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Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics, 5: 13. |
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Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications, 5: 4689. |
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Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology, 24(8), 875-879. |
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Malaspinas, A.-S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y., Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D., & Willerslev, E. (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology, 24(21), R1035-R1037. |
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Oven, M. v., Brauer, S., Choi, Y., Ensing, J., Schiefenhövel, W., Stoneking, M., & Kayser, M. (2014). Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea. European journal of human genetics, 22, 1393-1403. |
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Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences of the United States of America, 111(7), 2632 -2637. |
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Theunert, C. (2014). Approaches for inferring past population size changes from genome-wide genetic data. PhD Thesis, Univ., Leipzig. |
2013
Barbieri, C., Vicente, M., Rocha, J., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013). Ancient substructure in early mtDNA lineages of southern Africa. American Journal of Human Genetics, 92, 285-292. |
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Duggan, A. T., & Stoneking, M. (2013). A highly unstable recent mutation in human mtDNA. American Journal of Human Genetics, 92(2), 279-284. |
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Grossmann, T., Vaish, A., Franz, J., Schroeder, R., Stoneking, M., & Friederici, A. D. (2013). Emotional voice processing: Investigating the role of genetic variation in the serotonin transporter across development. PLoS One, 8(7): e68377. |
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Li, J., Nasidze, I., Quinque, D., Li, M., Horz, H.-P., Andre, C., Garriga, R. M., Halbwax, M., Fischer, A., & Stoneking, M. (2013). The saliva microbiome of Pan and Homo. BMC Microbiology, 13: 204. |
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Pugach, I., Delfin, F., Gunnarsdóttir, E., Kayser, M., & Stoneking, M. (2013). Genome-wide data substantiate Holocene gene flow from India to Australia. Proceedings of the National Academy of Sciences of the United States of America, 110(5), 1803-1808. |
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Stoneking, M. (2013). Mitochondrial genome: Evolution. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley. |
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Stoneking, M., & Harvati, K. (2013). Early Old World migrations of Homo sapiens: human biology. In The Encyclopedia of Global Human Migration, P. I. Hoboken, NJ: Wiley-Backwell. |
2012
Ballantyne, K. N., van Oven, M., Ralf, A., Stoneking, M., Mitchell, R. J., van Oorschot, R. A., & Kayser, M. (2012). MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania. Forensic Science International: Genetics, 6(4), 425-436. |
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de Filippo, C., Bostoen, K., Stoneking, M., & Pakendorf, B. (2012). Bringing together linguistic and genetic evidence to test the Bantu expansion. Proceedings of the Royal Society B: Biological Sciences, 279(1741), 3256-3263. |
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Delfin, F., Myles, S., Choi, Y., Hughes, D., Illek, R., van Oven, M., Pakendorf, B., Kayser, M., & Stoneking, M. (2012). Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands. Molecular Biology and Evolution, 29(2), 545-564. |
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Jinam, T. A., Hong, L.-C., Phipps, M. E., Stoneking, M., Ameen, M., Edo, J., HUGO Pan-Asian SNP Consortium, & Saitou, N. (2012). Evolutionary history of continental South East Asians: "Early Train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Molecular Biology and Evolution, 29(11), 3513-3527. |
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Kenny, E. E., Timpson, N. J., Sikora, M., Yee, M.-C., Moreno-Estrada, A., Eng, C., Huntsman, S., Burchard, E. G., Stoneking, M., Bustamante, C. D., & Myles, S. (2012). Melanesian blond hair is caused by an amino acid change in TYRP1. Science, 336(6081), 554-554. |
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Li, J., Menard, V., Benish, R. L., Jurevic, R. J., Guillemette, C., Stoneking, M., Zimmerman, P. A., & Mehlotra, R. K. (2012). Worldwide variation in human drug-metabolism enzyme genes CYP2B6 and UGT2B7: implications for HIV/AIDS treatment. Pharmacogenomics, 13(5), 555-570. |
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Li, M., & Stoneking, M. (2012). A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology, 13(5): R34. |
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Li, M., Schröder, R., Ko, A.-M.-S., & Stoneking, M. (2012). Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs. Nucleic Acids Research, 40(18): e137. |
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Pickrell, J. K., Patterson, N., Berthold, F., Barbieri, C., Gerlach, L., Gueldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., Lipson, M., Loh, P.-R., Lachance, J., Mountain, J., Bustamante, C. D., Berger, B., Tishkoff, S. A., Henn, B. M., Stoneking, M., Reich, D., & Pakendorf, B. (2012). The genetic prehistory of southern Africa. Nature Communications, 3: 1143. |
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Quillen, E. E., Bauchet, M., Bigham, A. W., Delgado-Burbano, M. E., Faust, F. X., Klimentidis, Y. C., Mao, X., Stoneking, M., & Shriver, M. D. (2012). OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans. Human Genetics, 131(7), 1073-1080. |
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Theunert, C., Tang, K., Lachmann, M., Hu, S., & Stoneking, M. (2012). Inferring the history of population size change from genome-wide SNP data. Molecular Biology and Evolution, 29(2), 3653-3667. |
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Xu, S., Pugach, I., Stoneking, M., Kayser, M., Jina, L., & The HUGO Pan-Asian SNP Consortium (2012). Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579. |
2011
de Filippo, C., Barbieri, C., Whitten, M., Mpoloka, S. W., Gunnarsdóttir, E. D., Bostoen, K., Nyambe, T., Beyer, K., Schreiber, H., Knijff, P. d., Luiselli, D., Stoneking, M., & Pakendorf, B. (2011). Y-chromosomal variation in sub-saharan Africa: Insights into the history of Niger-Congo groups. Molecular Biology and Evolution, 28(3): msq312v1, pp. 1255-1269. |
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Delfin, F., Salvador, J. M., Calacal, G. C., Perdigon, H. B., Tabbada, K. A., Villamor, L. P., Halos, S. C., Gunnarsdóttir, E., Myles, S., Hughes, D. A., Xu, S., Jin, L., Lao, O., Kayser, M., Hurles, M. E., Stoneking, M., & Ungria, M. C. A. d. (2011). The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups. European Journal of Human Genetics, 19(2), 224-230. |
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Gross, A., Tönjes, A., Kovacs, P., Veeramah, K. R., Ahnert, P., Roshyara, N. R., Gieger, C., Rueckert, I.-M., Loeffler, M., Stoneking, M., Wichmann, H.-E., Novembre, J., Stumvoll, M., & Scholz, M. (2011). Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays. BMC Genetics, 12: 67. |
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Grossmann, T., Johnson, M. H., Vaish, A., Hughes, D. A., Quinque, D., Stoneking, M., & Friederici, A. D. (2011). Genetic and neural dissociation of individual responses to emotional expressions in human infants. Developmental Cognitive Neuroscience, 1(1), 57-66. |
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Gunnarsdóttir, E. D., Li, M., Bauchet, M., Finstermeier, K., & Stoneking, M. (2011). High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research, 21(1), 1-11. |
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Gunnarsdóttir, E. D., Nandineni, M. R., Li, M., Myles, S., Gil, D., Pakendorf, B., & Stoneking, M. (2011). Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2: 228. |
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Li, J., Zhang, L., Zhou, H., Stoneking, M., & Tang, K. (2011). Global patterns of genetic diversity and signals of natural selection for human ADME genes. Human Molecular Genetics, 20(3), 528-540. |
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Myles, S., Lea, R. A., Ohashi, J., Chambers, G. K., Weiss, J. G., Hardouin, E., Engelken, J., Macartney-Coxson, D. P., Eccles, D. A., Naka, I., Kimura, R., Inaoka, T., Matsumura, Y., & Stoneking, M. (2011). Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans. BMC Medical Genetics, 12(1): 10, pp. 1-7. |
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Nasidze, I., & Stoneking, M. (2011). Microbiome diversity in human saliva. In F. J. d. Bruijn ( |
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Nasidze, I., Li, J., Schroeder, R., Creasey, J. L., Li, M., & Stoneking, M. (2011). High diversity of the saliva microbiome in Batwa pygmies. PLoS ONE, 6(8): e23352. |
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Pugach, I., Matveyev, R., Wollstein, A., Kayser, M., & Stoneking, M. (2011). Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biology, 12(2): R19, pp. 1-18. |
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Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A.-M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., Saitou, N., Wollstein, A., Kayser, M., Pääbo, S., & Stoneking, M. (2011). Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. The American Journal of Human Genetics, 89(4), 516-528. |
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Schönberg, A., Theunert, C., Li, M., Stoneking, M., & Nasidze, I. (2011). High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences. European Journal of Human Genetics, 19(9), 988-994. |
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Stoneking, M., & Krause, J. (2011). Learning about human population history from ancient and modern genomes. Nature Reviews Genetics, 12(9), 603-614. |
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Stoneking, M.(2011). Was wir von Spucke lernen können: Diversität im Mikrobiom des menschlichen Speichels. Retrieved from https://www.mpg.de/1262166/Mikrobiom_Speichel?c=1070738. |
2010
Athanasiadis, G., Esteban, E., Gayà-Vidal, M., Dugoujon, J.-M., Moschonas, N., Chaabani, H., Bissar-Tadmouri, N., Harich, N., Stoneking, M., & Moral, P. (2010). Different evolutionary histories of the coagulation factor VII gene in human populations? Annals of Human Genetics, 74(1), 34-45. |
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Athanasiadis, G., González-Pérez, E., Esteban, E., Dugoujon, J.-M., Stoneking, M., & Moral, P. (2010). The Mediterranean Sea as a barrier to gene flow: Evidence from variation in and around the F7 and F12 genomic regions. BMC Evolutionary Biology, 10: 84. |
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de Filippo, C., Heyn, P., Barham, L., Stoneking, M., & Pakendorf, B. (2010). Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia. American Journal of Physical Anthropology, 141(3), 382-394. |
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Li, M., Schönberg, A., Schaefer, M., Schroeder, R., Nasidze, I., & Stoneking, M. (2010). Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. The American Journal of Human Genetics, 87(2), 237-249. |
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Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060. |
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Stoneking, M., & Delfin, F. S. (2010). The human genetic history of East Asia: Weaving a complex tapestry. Current Biology, 20(4), R188-R193. |
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Wollstein, A., Lao, O., Becker, C., Brauer, S., Trent, R. J., Nürnberg, P., Stoneking, M., & Kayser, M. (2010). Demographic history of Oceania inferred from genome-wide data. Current Biology, 20, 1983-1992. |
2009
Balaresque, P., Parkin, E. J., Roewer, L., Carvalho-Silva, D. R., Mitchell, R. J., Oorschot, R. A. H. v., Henke, J., Stoneking, M., Nasidze, I., Wetton, J., Knijff, P. d., Tyler-Smith, C., & Jobling, M. A. (2009). Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. International Journal of Legal Medicine, 123(1), 15-23. |
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Hillmer, A. M., Freudenberg, J., Myles, S., Herms, S., Tang, K., Hughes, D. A., Brockschmidt, F. F., Ruan, Y., Stoneking, M., & Nöthen, M. M. (2009). Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Human Genetics, 126(2), 223-232. |
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Hughes, D. A., Hinney, A., Brumm, H., Wermter, A.-K., Biebermann, H., Hebebrand, J., & Stoneking, M. (2009). Increased constraints on MC4R during primate and human evolution. Human Genetics, 124(6), 633-647. |
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Hughes, D. A., Jastroch, M., Stoneking, M., & Klingenspor, M. (2009). Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis. BMC Evolutionary Biology, 9: 4. |
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López Herráez, D., Bauchet, M., Tang, K., Theunert, C., Pugach, I., Li, J., Nandineni, M. R., Gross, A., Scholz, M., & Stoneking, M. (2009). Genetic variation and recent positive selection in worldwide human populations: Evidence from nearly 1 million SNPs. PLoS ONE, 4(11): e7888. |
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Mona, S., Grunz, K. E., Brauer, S., Pakendorf, B., Castrì, L., Sudoyo, H., Marzuki, S., Barnes, R. H., Schmidtke, J., Stoneking, M., & Kayser, M. (2009). Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Molecular Biology and Evolution, 26(8), 1865-1877. |
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Moreno-Estrada, A., Tang, K., Sikora, M., Marquès-Bonet, T., Casals, F., Navarro, A., Calafell, F., Bertranpetit, J., Stoneking, M., & Bosch, E. (2009). Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution, 26(10), 2285-2297. |
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Myles, S., Stoneking, M., & Timpson, N. (2009). An assessment of the portability of ancestry informative markers between human populations. BMC Medical Genomics, 2: 45. |
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Nasidze, I., Li, J., Quinque, D., Tang, K., & Stoneking, M. (2009). Global diversity in the human salivary microbiome. Genome Research, 19(4), 636-643. |
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Nasidze, I., Quinque, D., Li, J., Li, M., Tang, K., & Stoneking, M. (2009). Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches. Analytical Biochemistry, 391(1), 64-68. |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., Asadova, P., Zhukova, O., & Stoneking, M. (2009). MtDNA and Y-chromosome variation in the Talysh of Iran and Azerbaijan. American Journal of Physical Anthropology, 138(1), 82-89. |
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Roewer, L., Willuweit, S., Stoneking, M., & Nasidze, I. (2009). A Y-STR database of Iranian and Azerbaijanian minority populations. Forensic Science International: Genetics, 4(1), e53-e55. |
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Ryan, A. W., Hughes, D. A., Tang, K., Kelleher, D. P., Ryan, T., McManus, R., & Stoneking, M. (2009). Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus. European Journal of Human Genetics, 17(2), 219-227. |
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Stoneking, M. (2009). Humans as second orangutans: sense or nonsense? BioEssays, 31(10), 1010-1012. |
2008
Balaresque, P., Bowden, G. R., Parkin, E. J., Omran, G. A., Heyer, E., Quintana-Murci, L., Roewer, L., Stoneking, M., Nasidze, I., Carvalho-Silva, D. R., Tyler-Smith, C., de Knijff, P., & Jobling, M. A. (2008). Dynamic nature of the proximal AZFc region of the human Y chromosome: Multiple independent deletion and duplication events revealed by microsatellite analysis. Human Mutation, 29(10), 1171-1180. |
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Bryk, J., Hardouin, E., Pugach, I., Hughes, D. A., Strotmann, R., Stoneking, M., & Myles, S. (2008). Positive selection in East Asians for an EDAR allele that enhances NF-kappaB activation. PLoS ONE, 3(5): e2209. |
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Fechner, A., Quinque, D., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Willuweit, S., Zhukova, O., Roewer, L., Stoneking, M., & Nasidze, I. (2008). Boundaries and clines in the West Eurasian Y-chromosome landscape: Insights from the European part of Russia. American Journal of Physical Anthropology, 137(1), 41-47. |
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Güldemann, T., & Stoneking, M. (2008). A historical appraisal of clicks: A linguistic and genetic population perspective. Annual Review of Anthropology, 37, 93-109. |
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Herráez, D. L., & Stoneking, M. (2008). High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping. Analytical Biochemistry, 383(2), 329-331. |
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Hughes, D. A., Tang, K., Strotmann, R., Schöneberg, T., Prenen, J., Nilius, B., & Stoneking, M. (2008). Parallel selection on TRPV6 in human populations. PLoS One, 3(3): e1686. |
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Kayser, M., Choi, Y., Oven, M. v., Mona, S., Brauer, S., Trent, R. J., Suarkia, D., Schiefenhövel, W., & Stoneking, M. (2008). The impact of the Austronesian expansion: Evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia. Molecular Biology and Evolution, 25(7), 1362-1374. |
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Kayser, M., Lao, O., & Stoneking, M. (2008). Reply to Hedrick: East Asian and Melanesian ancestry in Polynesians. American Journal of Human Genetics, 83(1), 140-142. |
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Kayser, M., Lao, O., Saar, K., Brauer, S., Wang, X., Nürnberg, P., Trent, R. J., & Stoneking, M. (2008). Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. American Journal of Human Genetics, 82(1), 194-198. |
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Klingenspor, M., Fromme, T., Hughes, D. A., Manzke, L., Polymeropoulos, E., Riemann, T., Trzcionka, M., Hirschberg, V., & Jastroch, M. (2008). An ancient look at UCP1. Biochimica et Biophysica Acta (BBA) - Bioenergetics, 1777(7-8), 637-641. |
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Mehlotra, R. K., Mattera, G., Bockarie, M. J., Maguire, J. D., Baird, J. K., Sharma, Y. D., Alifrangis, M., Dorsey, G., Rosenthal, P. J., Fryauff, D. J., Kazura, J. W., Stoneking, M., & Zimmerman, P. A. (2008). Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy, 52(6), 2212-2222. |
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Myles, S., Davison, D., Barrett, J., Stoneking, M., & Timpson, N. (2008). Worldwide population differentiation at disease-associated SNPs. BMC Medical Genomics, 1: 22. |
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Myles, S., Tang, K., Somel, M., Green, R. E., Kelso, J., & Stoneking, M. (2008). Identification and analysis of genomic regions with large between-population differentiation in humans. Annals of Human Genetics, 72(1), 99-110. |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2008). Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Annals of Human Genetics, 72(2), 241-252. |
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Roewer, L., Willuweit, S., Krüger, C., Nagy, M., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Zhukova, O., Stoneking, M., & Nasidze, I. (2008). Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. International Journal of Legal Medicine, 122(3), 219-223. |
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Stoneking, M. (2008). Human origins - the molecular perspective. EMBO Reports, 9(Supplement 1), S46-S50. |
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Stoneking, M. (2008). Mitochondrial genome: Evolution. In Encyclopedia of Life Sciences (ELS). Chichester: Wiley. |
2007
Cordaux, R., Srikanta, D., Lee, J., Stoneking, M., & Batzer, M. A. (2007). In search of polymorphic alu insertions with restricted geographic distributions. Genomics, 90(1), 154-158. |
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DaRe, J. T., Mehlotra, R. K., Michon, P., Mueller, I., Reeder, J. C., Sharma, Y. D., Stoneking, M., & Zimmerman, P. A. (2007). Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea. Malaria Journal, 6: 34. |
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Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M. T. P., Younghusband, B., Young, T., Marshall, I., Willerslev, E., Stoneking, M., & Poinar, H. N. (2007). A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA. American Journal of Physical Anthropology, 132(4), 594-604. |
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Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D. A., Rohland, N., Pilli, E., Longo, L., Condemi, S., de la Rasilla, M., Fortea, J., Rosas, A., Stoneking, M., Schöneberg, T., Bertranpetit, J., & Hofreiter, M. (2007). A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, 318(5855), 1453-1455. |
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Myles, S., Hradetzky, E., Engelken, J., Lao, O., Nürnberg, P., Trent, R. J., Wang, X., Kayser, M., & Stoneking, M. (2007). Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians. European Journal of Human Genetics, 15, 584-589. |
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Myles, S., Somel, M., Tang, K., Kelso, J., & Stoneking, M. (2007). Identifying genes underlying skin pigmentation differences among human populations. Human Genetics, 120(5), 613-621. |
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Nasidze, I., Quinque, D., Udina, I., Kunizheva, S., & Stoneking, M. (2007). The Gagauz, a linguistic enclave, are not a genetic isolate. Annals of Human Genetics, 71(3), 379-389. |
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Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., & Stoneking, M. (2007). Mating patterns amongst Siberian reindeer herders: Inferences from mtDNA and Y-chromosomal analyses. American Journal of Physical Anthropology, 133(3), 1013-1027. |
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Roewer, L., Krüger, C., Willuweit, S., Nagy, M., Rodig, H., Kokshunova, L., Rothämel, T., Kravchenko, S. A., Jobling, M. A., Stoneking, M., & Nasidze, I. (2007). Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Science International, 173(2-3), 204-209. |
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Rootsi, S., Zhivotovsky, L. A., Baldovic, M., Kayser, M., Kutuev, I. A., Khusainova, R., Bermisheva, M. A., Gubina, M., Fedorova, S. A., Ilumäe, A.-M., Khusnutdinova, E., Voevoda, M. I., Osipova, L. P., Stoneking, M., Lin, A. A., Ferak, V., Parik, J., Kivisild, T., Underhill, P. A., & Villems, R. (2007). A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. European Journal of Human Genetics, 15(2), 204-211. |
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Stoneking, M., & Kayser, M. (2007). Genealogical markers: mtDNA and the Y-chromosome. In Michael P. Weiner, Stacey B. Gabriel, J. Claiborne Stephens ( |
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Stoneking, M., & Nasidze, I. (2007). Reply to Parson: The art of reading sequence electropherograms. Annals of Human Genetics, 71(2), 279-280. |
2006
Hammer, M. F., Karafet, H., Park, H.-S., Omoto, K., Harihara, S., Stoneking, M., & Horai, S. (2006). Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics, 51, 47-58. |
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Kayser, M., Brauer, S., Cordaux, R., Casto, A., Lao, O., Zhivotovsky, L. A., Moyse-Faurie, C., Rutledge, R., Schiefenhövel, W., Gil, D., Lin, A. A., Underhill, P. A., Oefner, P. J., Trent, R. J., & Stoneking, M. (2006). Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution, 23(11), 2234-2244. |
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Nasidze, I., & Stoneking, M. (2006). Mother tongue: Concomitant replacement of language and mtDNA in South Caspian populations of Iran. In Cangelosi, A.; Smith, A.; ( |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2006). Concomitant replacement of language and mtDNA in South Caspian populations of Iran. Current Biology, 16(7), 668-673. |
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Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., Danilova, A. P., Protod´jakonov, A., & Stoneking, M. (2006). Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Human Genetics, 120(3), 334-353. |
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Quinque, D., Kittler, R., Kayser, M., Stoneking, M., & Nasidze, I. (2006). Evaluation of saliva as a source of human DNA for population and association studies. Analytical Biochemistry, 353(2), 272-277. |
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Stoneking, M. (2006). Genetic evidence for our recent African ancestry. In Soodyall, Himla ( |
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Stoneking, M. (2006). Investigating the health of our ancestors: Insights from the evolutionary genetic consequences of prehistoric diseases. In Bromage, Timothy ( |
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Stoneking, M., & Nasidze, I. (2006). The patient is not dead yet: Premature autopsy of an mtDNA data set. Annals Human Genetics, 70(3), 327-331. |
2005
Hamilton, G., Stoneking, M., & Excoffier, L. (2005). Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences of the United States of America, 102(21), 7476-7480. |
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Mehlotra, R. K., Mattera, G., Bhatia, K., Reeder, J. C., Stoneking, M., & Zimmerman, P. A. (2005). Insight into the early spread of chloroquine resistant Plasmodium falciparum infections in Papua New Guinea. Journal of Infectious Diseases, 192(12), 2174-2179. |
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Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L., & Stoneking, M. (2005). Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology, 128(4), 846-854. |
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Nasidze, I., Quinque, D., Ozturk, M., Bendukidze, N., & Stoneking, M. (2005). MtDNA and Y-chromosome variation in Kurdish groups. Annals of Human Genetics, 69(4), 401-412. |
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Oota, H., Pakendorf, B., Weiss, G., von Haeseler, A., Pookajorn, S., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2005). Recent origin and cultural reversion of a hunter–gatherer group. PLoS Biology, 3(3): e71. |
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Pakendorf, B., & Stoneking, M. (2005). Mitochondrial DNA and human evolution. Annual Review of Genomics and Human Genetics, 6, 165-183. |
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Stoneking, M. (2005). Gene, Geographie und Sprache. In Günter Hauska ( |
2004
Cordaux, R., Aunger, R., Bentley, G. R., Nasidze, I., Sirajuddin, S. M., & Stoneking, M. (2004). Independent origins of Indian caste and tribal paternal lineages. Current Biology, 14(3), 231-235. |
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Cordaux, R., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2004). Y-STR haplotypes from eight south Indian groups based on five loci. Journal of Forensic Sciences, 49(4), 847-848. |
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Cordaux, R., Edwin, D., Vishwanathan, H., & Stoneking, M. (2004). Genetic evidence for the demic diffusion of agriculture to India. Science, 304(5674), 1125-1125. |
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Cordaux, R., Weiss, G., Saha, N., & Stoneking, M. (2004). The northeast Indian passageway: A barrier or corridor for human migrations? Molecular Biology and Evolution, 21(8), 1525-1533. |
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Erler, A., Stoneking, M., & Kayser, M. (2004). Development of Y-chromosomal microsatellite markers for non-human primates. Molecular Ecology, 13(10), 2921-2930. |
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Hughes, D. A., Cordaux, R., & Stoneking, M. (2004). Humans. Current Biology, 14, R367-R369. |
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Kasperaviciute, D., Kucinskas, V., & Stoneking, M. (2004). Y chromosome and mitochondrial DNA variation in Lithuanians. Annals of Human Genetics, 68(5), 438-452. |
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Kayser, M., Kittler, R., Erler, A., Hedman, M., Lee, A. C., Mohyuddin, A., Mehdi, S. Q., Rosser, Z. H., Stoneking, M., Jobling, M. A., Sajantila, A., & Tyler-Smith, C. (2004). A comprehensive survey of human Y-chromosomal microsatellites. American Journal of Human Genetics, 74(6), 1183-1197. |
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Nasidze, I., Ling, E. Y., Quinque, D., Dupanloup, I., Cordaux, R., Rychkov, S., Naumova, O., Zhukova, O., Sarraf-Zadegan, N., Naderi, G. A., Asgary, S., Sardas, S., Farhud, D. D., Sarkisian, T., Asadov, C., Kerimov, A., & Stoneking, M. (2004). Mitochondrial DNA and Y-chromosome variation in the Caucasus. Annals of Human Genetics, 68(3), 205-221. |
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Nasidze, I., Quinque, D., Dupanloup, I., Rychkov, S., Naumova, O., Zhukova, O., & Stoneking, M. (2004). Genetic evidence concerning the origins of South and North Ossetians. Annals of Human Genetics, 68(6), 588-599. |
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Vishwanathan, H., Deepa, E., Cordaux, R., Stoneking, M., Usha Rani, M. V., & Majumder, P. P. (2004). Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers. Annals Human Genetics, 68(2), 128-138. |
2003
Cordaux, R., & Stoneking, M. (2003). South Asia: the Andamanese and the genetic evidence for an "early" human dispersal out of Africa. American Journal of Human Genetics, 72(6), 1586-1590. |
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Cordaux, R., Saha, N., Bentley, G. R., Aunger, A., Sirajuddin, S. M., & Stoneking, M. (2003). Mitochondrial DNA analysis reveals diverse histories of tribal populations of India. European Journal of Human Genetics, 11(3), 253-264. |
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Kayser, M., Brauer, S., & Stoneking, M. (2003). A genome scan to detect candidate regions influenced by local natural selection in human populations. Molecular Biology and Evolution, 20(6), 893-900. |
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Kayser, M., Brauer, S., Schädlich, H., Prinz, M., Batzer, M. A., Zimmerman, P. A., Boatin, B. A., & Stoneking, M. (2003). Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Research, 13, 624-634. |
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Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., Shen, P. D., Oefner, P. J., Tommaseo-Ponzetta, M., & Stoneking, M. (2003). Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. American Journal of Human Genetics, 72(2), 281-302. |
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Kittler, R., Erler, A., Brauer, S., Stoneking, M., & Kayser, M. (2003). Apparent intra-chromosomal exchange on the human Y chromosome explained by population history. European Journal of Human Genetics, 11, 304-314. |
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Kittler, R., Kayser, M., & Stoneking, M. (2003). Molecular evolution of Pediculus humanus and the origin of clothing. Current Biology, 13(16), 1414-1417. |
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Nasidze, I., Sarkisian, T., Kerimov, A., & Stoneking, M. (2003). Testing hypotheses of language replacement in the Caucasus: Evidence from the Y-chromosome. Human Genetics, 112(3), 255-261. |
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Nasidze, I., Schädlich, H., & Stoneking, M. (2003). Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci. Forensic Science International, 137(1), 85-93. |
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Pakendorf, B., Wiebe, V., Tarskaia, L. A., Spitsyn, V. A., Soodyall, H., Rodewald, A., & Stoneking, M. (2003). Mitochondrial DNA evidence for admixed origins of central Siberian populations. American Journal of Physical Anthropology, 120(3), 211-224. |
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Stoneking, M. (2003). Mitochondrial genome: Evolution. In David N. Cooper ( |
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Stoneking, M. (2003). Widespread prehistoric human cannibalism: Easier to swallow? Trends in Ecology & Evolution, 18(10), 489-490. |
2002
Kayser, M., Brauer, S., Willuweit, S., Schädlich, H., Batzer, M. A., Zawacki, J., Prinz, M., Roewer, L., & Stoneking, M. (2002). Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for US populations. Journal of Forensic Sciences, 47(3), 513-519. |
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Kittler, R., Stoneking, M., & Kayser, M. (2002). A whole genome amplification method to generate long fragments from low quantities of genomic DNA. Analytical Biochemistry, 300(2), 237-244. |
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Nasidze, I., & Stoneking, M. (2002). Genetic variation among human populations from the Caucasus. In Shumny, V. K.; Kolchanov, N. A.; Fedotov, A. M. ( |
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Oota, H., Kitano, T., Jin, F., Yuasa, I., Wang, L., Ueda, S., Saitou, N., & Stoneking, M. (2002). Extreme mtDNA homogeneity in continental Asian populations. American Journal of Physical Anthropology, 118(2), 146-153. |
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Pakendorf, B., Morar, B., Tarskaia, L. A., Kayser, M., Soodyall, H., Rodewald, A., & Stoneking, M. (2002). Y-chromosomal evidence for a strong reduction in male population size of Yakuts. Human Genetics, 110(2), 198-200. |
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Presser, J., Deverell, A., Redd, A., & Stoneking, M. (2002). Tasmanian aborigines and DNA. Papers and Proceedings of the the Royal Society of Tasmania, 136, 35-38. |
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Romualdi, C., Balding, D., Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Stoneking, M., Batzer, M. A., & Barbujani, G. (2002). Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research, 12(4), 602-612. |
2001
Begovich, A. B., Moonsamy, P. V., Mack, S. J., Barcellos, L. F., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Konenkov, V. I., Sartakova, M. L., Titanji, V. P. K., Rickards, O., & Klitz, W. (2001). Genetic variability and linkage disequilibrium within the DP region: Analysis of 15 different populations. Tissue Antigens, 57(5), 424-439. |
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Donnelly, P., Foley, R., Stoneking, M., Deininger, P. L., & Batzer, M. A. (2001). Alu insertion polymorphisms in humans: A review. In Genes, Fossils and Behaviour (pp. 111-121). Amsterdam: IOS Press. |
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Justice, C. M., Den, Z., Nguyen, S. V., Stoneking, M., Deininger, P. L., Batzer, M. A., & Keats, B. J. B. (2001). Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution, 52(3), 232-238. |
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Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., & Stoneking, M. (2001). Independent histories of human Y chromosomes from Melanesia and Australia. American Journal of Human Genetics, 68(1), 173-190. |
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Melton, T., Clifford, S., Kayser, M., Nasidze, I., Batzer, M. A., & Stoneking, M. (2001). Diversity and heterogeneity in mitochondrial DNA of North American populations. Journal of Forensic Sciences, 46(1), 46-52. |
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Nasidze, I., & Stoneking, M. (2001). Mitochondrial DNA variation and language replacements in the Caucasus. Proceedings of the Royal Society of London B, 268(1472), 1197-1206. |
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Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Batzer, M. A., & Stoneking, M. (2001). Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. European Journal of Human Genetics, 9, 267-272. |
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Oota, H., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2001). Human mtDNA and Y-chromosome variation is correlated with matrilocal vs. patrilocal residence. Nature Genetics, 29, 20-21. |
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Stone, A. C., Starrs, J. E., & Stoneking, M. (2001). Mitochondrial DNA analysis of the presumptive remains of Jesse James. Journal of Forensic Sciences, 46(1), 173-176. |
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Stoneking, M. (2001). Single nucleotide polymorphisms: From the evolutionary past.. Nature, 409, 821-822. |
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Tishkoff, S. A., Varkonyi, R., Cahinhinan, N., Abbes, S., Argyropoulos, G., Destro-Bisol, G., Drousiotou, A., Dangerfield, B., Lefranc, G., Loiselet, J., Piro, A., Stoneking, M., Tagarelli, A., Tagarelli, G., Touma, E. H., Williams, S. M., & Clark, A. G. (2001). Haplotype diversity and linkage disequilibrium at human G6PD recent origin of alleles that confer malarial resistance. Science, 293(5529), 455-462. |
2000
Begovich, A. B., Klitz, W., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Rickards, O., Titanji, V. P. K., Konenkov, V. I., & Sartakova, M. L. (2000). HLA-DQ haplotypes in 15 different populations. In M. Kasahara ( |
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Clark, V. J., Sivendren, S., Saha, N., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2000). The 9-bp deletion between the mitochondrial lysine tRNA and COII genes in tribal populations of India. Human Biology, 72(2), 273-285. |
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Comas, D., Calafell, F., Benchemsi, N., Helal, A., Lefranc, G., Stoneking, M., Batzer, M. A., Bertranpetit, J., & Sajantila, A. (2000). Alu insertion polymorphisms in Northwest Africa and the Iberian Peninsula: Evidence for a strong genetic boundary through the Gibraltar Straits. Human Genetics, 107(4), 312-319. |
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Di Benedetto, G., Nasidze, I., Stenico, M., Nigro, L., Krings, M., Lanzinger, M., Vigilant, L., Stoneking, M., Pääbo, S., & Barbujani, G. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. European Journal of Human Genetics, 8(9), 669-677. |
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Kayser, M., Roewer, L., Hedman, M., Henke, L., Henke, J., Brauer, S., Kruger, C., Krawczak, M., Nagy, M., Dobosz, T., Szibor, R., de Knijff, P., Stoneking, M., & Sajantila, A. (2000). Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome revealed by direct observation in father/son pairs. American Journal of Human Genetics, 66(5), 1580-1588. |
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Kumar, S., Hedrick, P. W., Dowling, T., & Stoneking, M. (2000). Questioning evidence for recombination in human mitochondrial DNA. Science, 288(5473), 1931. |
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Kumar, S., Nasidze, I., Walimbe, S. R., & Stoneking, M. (2000). Brief communication: Discouraging prospects for ancient DNA from India. American Journal of Physical Anthropology, 113(1), 129-133. |
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Mack, S. J., Bugawan, T. L., Moonsamy, P. V., Erlich, J. A., Trachtenberg, E., Paik, Y. K., Begovich, A. B., Saha, N., Beck, H. P., Stoneking, M., & Erlich, H. A. (2000). Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens, 55(5), 383-400. |
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Sheen, F., Sherry, S. T., Risch, G. M., Robichaux, M., Nasidze, I., Stoneking, M., Batzer, M. A., & Swergold, G. D. (2000). Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition. Genome Research, 10(10), 1496-1508. |
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Stoneking, M. (2000). Hypervariable sites in the mtDNA control region are mutational hotspots. American Journal of Human Genetics, 67(4), 1029-1032. |
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Tishkoff, S. A., Pakstis, A. J., Stoneking, M., Kidd, J. R., Destro-Bisol, G., Sajantila, A., Deinard, A. S., Sirugo, G., Jenkins, T., Kidd, K. K., & Clark, A. G. (2000). Short tandem-repeat polymorphism/Alu haplotype variation at the PLAT locus: Implications for modern human origins. American Journal of Human Genetics, 67(4), 901-925. |