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Recent Department Publications

Last update: October 5th, 2024

2024

Atağ, G., Waldman, S., Carmi, S., & Somel, M. (2024). An explanation for the sister repulsion phenomenon in Patterson's f-statistics (advance online). Genetics, iyae144.
Open Access    DOI    BibTeX   Endnote   

Blank, V., Karlas, T., Anderegg, U., Wiegand, J., Arnold, J., Bundalian, L., Le Duc, G.-D., Körner, C., Ebert, T., & Saalbach, A. (2024). Thy‐1 restricts steatosis and liver fibrosis in steatotic liver disease. Liver International, 44(8), 2075-2090.
Open Access    DOI    BibTeX   Endnote   

Brazovskaja, A., Gomes, T., Holtackers, R., Wahle, P., Körner, C., He, Z., Schaffer, T., Eckel, J. C., Hänsel, R., Santel, M., Seimiya, M., Denecke, T., Dannemann, M., Brosch, M., Hampe, J., Seehofer, D., Damm, G., Camp, J. G., & Treutlein, B. (2024). Cell atlas of the regenerating human liver after portal vein embolization. Nature Communications, 15: 5827.
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Brunet-Ratnasingham, E., Morin, S., Randolph, H. E., Labrecque, M., Bélair, J., Lima-Barbosa, R., Pagliuzza, A., Marchitto, L., Hultström, M., Niessl, J., Cloutier, R., Sreng Flores, A. M., Brassard, N., Benlarbi, M., Prévost, J., Ding, S., Anand, S. P., Sannier, G., Marks, A., Wågsäter, D., Bareke, E., Zeberg, H., Lipcsey, M., Frithiof, R., Larsson, A., Zhou, S., Nakanishi, T., Morrison, D., Vezina, D., Bourassa, C., Gendron-Lepage, G., Medjahed, H., Point, F., Richard, J., Larochelle, C., Prat, A., Cunningham, J. L., Arbour, N., Durand, M., Richards, J. B., Moon, K., Chomont, N., Finzi, A., Tétreault, M., Barreiro, L., Wolf, G., & Kaufmann, D. E. (2024). Sustained IFN signaling is associated with delayed development of SARS-CoV-2-specific immunity. Nature Communications, 15: 4177.
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Cooke, N. P., Murray, M., Cassidy, L. M., Mattiangeli, V., Okazaki, K., Kasai, K., Gakuhari, T., Bradley, D. G., & Nakagome, S. (2024). Genomic imputation of ancient Asian populations contrasts local adaptation in pre- and post-agricultural Japan. iScience, 27(6): 110050.
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Fortes-Lima, C. A., Burgarella, C., Hammarén, R., Eriksson, A., Vicente, M., Jolly, C., Semo, A., Gunnink, H., Pacchiarotti, S., Mundeke, L., Matonda, I., Muluwa, J. K., Coutros, P., Nyambe, T. S., Cikomola, J. C., Coetzee, V., de Castro, M., Ebbesen, P., Delanghe, J., Stoneking, M., Barham, L., Lombard, M., Meyer, A., Steyn, M., Malmström, H., Rocha, J., Soodyall, H., Pakendorf, B., Bostoen, K., & Schlebusch, C. M. (2024). The genetic legacy of the expansion of Bantu-speaking peoples in Africa. Nature, 625, 540-547.
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Gnecchi Ruscone, G. A., Rácz, Z., Samu, L., Szeniczey, T., Faragó, N., Knipper, C., Friedrich, R., Zlámalová, D., Traverso, L., Liccardo, S., Wabnitz, S., Popli, D. R., Wang, K., Radzeviciute, R., Gulyás, B., Koncz, I., Balogh, C., Lezsák, G. M., Mácsai, V., Bunbury, M. M. E., Spekker, O., le Roux, P., Szécsényi-Nagy, A., Mende, B. G., Colleran, H., Hajdu, T., Geary, P., Pohl, W., Vida, T., Krause, J., & Hofmanová, Z. (2024). Network of large pedigrees reveals social practices of Avar communities. Nature, 629(8011), 376-383.
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Helmbrecht, N., Lackner, M., Maricic, T., & Pääbo, S. (2024). The modern human aryl hydrocarbon receptor is more active when ancestralized by genome editing. Proceedings of the National Academy of Sciences, 121(22): e2402159121.
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Micheel, J., Safrastyan, A., Aron, F., & Wollny, D. (2024). Exploring the impact of primer length on efficient gene detection via high-throughput sequencing. Nature Communications, 15: 5858.
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Mylopotamitaki, D., Weiss, M., Fewlass, H., Zavala, E. I., Rougier, H., Sümer, A., Hajdinjak, M., Smith, G. M., Ruebens, K., Sinet-Mathiot, V., Pederzani, S., Essel, E., Harking, F. S., Xia, H., Hansen, J., Kirchner, A., Lauer, T., Stahlschmidt, M., Hein, M., Talamo, S., Wacker, L., Meller, H., Dietl, H., Orschiedt, J., Olsen, J. V., Zeberg, H., Prüfer, K., Krause, J., Meyer, M., Welker, F., McPherron, S. P., Schüler, T., & Hublin, J.-J. (2024). Homo sapiens reached the higher latitudes of Europe by 45,000 years ago. Nature, 626, 341-346.
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Pederzani, S., Britton, K., Trost, M., Fewlass, H., Bourgon, N., McCormack, J., Jaouen, K., Dietl, H., Döhle, H.-J., Kirchner, A., Lauer, T., Le Corre, M., McPherron, S. P., Meller, H., Mylopotamitaki, D., Orschiedt, J., Rougier, H., Ruebens, K., Schüler, T., Sinet-Mathiot, V., Smith, G. M., Talamo, S., Tütken, T., Welker, F., Zavala, E. I., Weiss, M., & Hublin, J.-J. (2024). Stable isotopes show Homo sapiens dispersed into cold steppes ~45,000 years ago at Ilsenhöhle in Ranis, Germany. Nature Ecology & Evolution.
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Rees, J., Sarangi, G. K., Cheng, Q., Floor, M., Andrés, A. M., Miguel, B. O., Villà-Freixa, J., Arnér, E. S., & Castellano, S. (2024). Ancient loss of catalytic selenocysteine spurred convergent adaptation in a mammalian oxidoreductase. Genome Biology and Evolution, 16(3): evae041.
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Smith, G. M., Ruebens, K., Zavala, E. I., Sinet-Mathiot, V., Fewlass, H., Pederzani, S., Jaouen, K., Mylopotamitaki, D., Britton, K., Rougier, H., Stahlschmidt, M., Meyer, M., Meller, H., Dietl, H., Orschiedt, J., Krause, J., Schüler, T., McPherron, S. P., Weiss, M., Hublin, J.-J., & Welker, F. (2024). The ecology, subsistence and diet of ~45,000-year-old Homo sapiens at Ilsenhöhle in Ranis, Germany. Nature Ecology & Evolution.
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Thao, D. H., Dinh, T. H., Mitsunaga, S., Duy, L. D., Phuong, N. T., Anh, N. P., Anh, N. T., Duc, B. M., Hue, H. T. T., Ha, N. H., Ton, N. D., Hübner, A., Pakendorf, B., Stoneking, M., Inoue, I., Duong, N. T., & Hai, N. V. (2024). Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam. PLoS One, 19(6): e0304964.
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Woravatin, W., Wongkomonched, R., Tassaneeyakul, W., Stoneking, M., Makarawate, P., & Kutanan, W. (2024). Complete mitochondrial genomes of patients from Thailand with cardiovascular diseases. PLoS One, 19(7): e0307036.
Open Access    DOI    BibTeX   Endnote   

Xing, L., Gkini, V., Nieminen, A. I., Zhou, H.-C., Aquilino, M., Naumann, R., Reppe, K., Tanaka, K., Carmeliet, P., Heikinheimo, O., Pääbo, S., Huttner, W. B., & Namba, T. (2024). Functional synergy of a human-specific and an ape-specific metabolic regulator in human neocortex development. Nature Communications, 15(1): 3468.
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Zeberg, H., Jakobsson, M., & Pääbo, S. (2024). [Review] The genetic changes that shaped Neandertals, Denisovans, and modern humans. Cell, 187, 1047-1058.
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2023

Ågren, R., Patil, S., Zhou, X., Sahlholm, K., Pääbo, S., & Zeberg, H. (2023). Major genetic risk factors for Dupuytren's disease are inherited from Neandertals. Molecular Biology and Evolution, 40(6): msad130.
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Arias, L., Emlen, N. Q., Norder, S., Julmi, N., Lemus Serrano, M., Chacon, T., Wiegertjes, J., Howard, A., Azevedo, M. C. B. C., Caine, A., Dunn, S., Stoneking, M., & Van Gijn, R. (2023). Interpreting mismatches between linguistic and genetic patterns among speakers of Tanimuka (Eastern Tukanoan) and Yukuna (Arawakan). Interface Focus, 13(1): 20220056.
Open Access    DOI    BibTeX   Endnote   

Bornschein, U., Zeberg, H., Enard, W., Hevers, W., & Pääbo, S. (2023). Functional dissection of two amino acid substitutions unique to the human FOXP2 protein. Scientific Reports, 13(1): 3747.
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Breitfeld, J., Horn, K., Le Duc, D., Velluva, A., Marzi, C., Grallert, H., Friedrich, N., Pietzner, M., Völker, U., Völzke, H., Ahlqvist, E., Aly, D. M., Tuomi, T., Baber, R., Kratzsch, J., Thiery, J., Isermann, B., Loeffler, M., Klöting, N., Blüher, M., Stumvoll, M., Heiker, J. T., Tönjes, A., Scholz, M., & Kovacs, P. (2023). Genetic dissection of serum vaspin highlights its causal role in lipid metabolism. Obesity, 31(11), 2862-2874.
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Bundalian, L., Su, Y.-Y., Chen, S., Velluva, A., Kirstein, A. S., Garten, A., Biskup, S., Battke, F., Lal, D., Heyne, H. O., Platzer, K., Lin, C.-C., Lemke, J. R., & Le Duc, D. (2023). Epilepsies of presumed genetic etiology show enrichment of rare variants that occur in the general population. The American Journal of Human Genetics, 110, 1110-1122.
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Cahan, P., & Treutlein, B. (2023). A conversation with ChatGPT on the role of computational systems biology in stem cell research [Editorial]. Stem Cell Reports, 18, 1-2.
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Carlhoff, S., Kutanan, W., Rohrlach, A. B., Posth, C., Stoneking, M., Nägele, K., Shoocongdej, R., & Krause, J. (2023). Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand. Nature Communications, 14(1): 8527.
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Cauret, C. M. S., Jordan, D. C., Kukoly, L. M., Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M., Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis. PLoS Genetics, 19(10): e1010990.
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Emlen, N. Q., Arias, L., & van Gijn, R. (2023). Multidisciplinary approaches to the Amazonian past: Introduction to the theme issue. Interface Focus, 13(1): 2022.0068.
Open Access    DOI    BibTeX   Endnote   

Essel, E. (2023). Releasing secrets bound to ancient remains with modern DNA extraction techniques: An interview with Elena Essel. BioTechniques, 75(2), 42-46.
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Essel, E., Zavala, E. I., Schulz-Kornas, E., Kozlikin, M. B., Fewlass, H., Vernot, B., Shunkov, M. V., Derevianko, A. P., Douka, K., Barnes, I., Soulier, M.-C., Schmidt, A., Szymanski, M., Tsanova, T., Sirakov, N., Endarova, E., McPherron, S. P., Hublin, J.-J., Kelso, J., Pääbo, S., Hajdinjak, M., Soressi, M., & Meyer, M. (2023). Ancient human DNA recovered from a Palaeolithic pendant. Nature, 618, 328-332.
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Fewlass, H., Zavala, E. I., Fagault, Y., Tuna, T., Bard, E., Hublin, J.-J., Hajdinjak, M., & Wilczyński, J. (2023). Chronological and genetic analysis of an Upper Palaeolithic female infant burial from Borsuka Cave, Poland. iScience, 26(12): 108283.
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Fleck, J. S., Jansen, S. M. J., Wollny, D., Zenk, F., Seimiya, M., Jain, A., Okamoto, R., Santel, M., He, Z., Camp, J. G., & Treutlein, B. (2023). Inferring and perturbing cell fate regulomes in human brain organoids. Nature, 621, 365-372.
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Lackner, M., Helmbrecht, N., Pääbo, S., & Riesenberg, S. (2023). Detection of unintended on-target effects in CRISPR genome editing by DNA donors carrying diagnostic substitutions. Nucleic Acids Research, 51(5): gkac1254.
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Lauterbur, M. E., Cavassim, M. I. A., Gladstein, A. L., Gower, G., Pope, N. S., Tsambos, G., Adrion, J., Belsare, S., Biddanda, A., Caudill, V., Cury, J., Echevarria, I., Haller, B. C., Hasan, A. R., Huang, X., Iasi, L. N., Noskova, E., Obsteter, J., Pavinato, V. A. C., Pearson, A., Peede, D., Perez, M. F., Rodrigues, M. F., Smith, C. C., Spence, J. P., Teterina, A., Tittes, S., Unneberg, P., Vazquez, J. M., Waples, R. K., Wohns, A. W., Wong, Y., Baumdicker, F., Cartwright, R. A., Gorjanc, G., Gutenkunst, R. N., Kelleher, J., Kern, A. D., Ragsdale, A. P., Ralph, P. L., Schrider, D. R., & Gronau, I. (2023). Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. eLife, 12: RP84874.
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Liu, D., Min-Shan Ko, A., & Stoneking, M. (2023). The genomic diversity of Taiwanese Austronesian groups: Implications for the “Into- and Out-of-Taiwan” models. PNAS Nexus, 2(5): pgad122.
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Louis, M., Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, E. D., O’Brien, J., Post, K., Racimo, F., Rogan, E., Rosel, P. E., Sinding, M.-H.-S., van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E., & Foote, A. D. (2023). Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters. Nature Communications, 14: 4020.
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Murat, F., Mbengue, N., Winge, S. B., Trefzer, T., Leushkin, E., Sepp, M., Cardoso-Moreira, M., Schmidt, J., Schneider, C., Mößinger, K., Brüning, T., Lamanna, F., Belles, M. R., Conrad, C., Kondova, I., Bontrop, R., Behr, R., Khaitovich, P., Pääbo, S., Marques-Bonet, T., Grützner, F., Almstrup, K., Schierup, M. H., & Kaessmann, H. (2023). The molecular evolution of spermatogenesis across mammals. Nature, 613, 308-316.
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Oliveira, S., Fehn, A.-M., Amorim, B., Stoneking, M., & Rocha, J. (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38): eadh3822.
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Parker, C. E., Hiss, A. N., Spyrou, M. A., Neumann, G. U., Slavin, P., Nelson, E. A., Nagel, S., Dalidowski, X., Friederich, S., Krause, J., Herbig, A., Haak, W., & Bos, K. I. (2023). 14th century Yersinia pestis genomes support emergence of pestis secunda within Europe. PLoS Pathogens, 19(7): e1011404.
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Penner-Goeke, S., Bothe, M., Rek, N., Kreitmaier, P., Pöhlchen, D., Kühnel, A., Glaser, L. V., Kaya, E., Krontira, A. C., Röh, S., Czamara, D., Ködel, M., Monteserin-Garcia, J., Diener, L., Wölfel, B., Sauer, S., Rummel, C., Riesenberg, S., Arloth-Knauer, J., Ziller, M., Labeur, M., Meijsing, S., & Binder, E. B. (2023). High-throughput screening of glucocorticoid-induced enhancer activity reveals mechanisms of stress-related psychiatric disorders. PNAS, 120(49): e2305773120.
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Peyrégne, S., Slon, V., & Kelso, J. (2023). More than a decade of genetic research on the Denisovans. Nature Reviews Genetics, 25(2), 83-103.
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Popli, D., Peyrégne, S., & Peter, B. M. (2023). Estimating genetic relatedness from ancient DNA. In H. Meller, J. Krause, W. Haak, & R. Risch (Eds.), Kinship, sex, and biological relatedness: the contribution of archaeogenetics to the understanding of social and biological relations: 15. Mitteldeutscher Archäologentag vom 6. bis 8. Oktober 2022 in Halle (Saale) (pp. 95-99). Halle (Saale): Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt - Landesmuseum für Vorgeschichte.
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Popli, D., Peyrégne, S., & Peter, B. M. (2023). KIN: a method to infer relatedness from low-coverage ancient DNA. Genome Biology, 24: 10.
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Riesenberg, S., Kanis, P., Macak, D., Wollny, D., Düsterhöft, D., Kowalewski, J., Helmbrecht, N., Maricic, T., & Pääbo, S. (2023). Efficient high-precision homology-directed repair-dependent genome editing by HDRobust. Nature Methods, 20, 1388-1399.
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Safrastyan, A., zu Siederdissen, C. H., & Wollny, D. (2023). Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer. Human Genomics, 17(1): 90.
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Soressi, M., & Hajdinjak, M. (2023). Ancient woman’s DNA recovered from a 20,000-year-old pendant. Nature, 618, 328-332.
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Stoneking, M., Arias, L., Liu, D., Oliveira, S., Pugach, I., & Rodriguez, J. (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences, 120(4): e22094751.
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Swali, P., Schulting, R., Gilardet, A., Kelly, M., Anastasiadou, K., Glocke, I., McCabe, J., Williams, M., Audsley, T., Loe, L., Fernández-Crespo, T., Ordoño, J., Walker, D., Clare, T., Cook, G., Hodkinson, I., Simpson, M., Read, S., Davy, T., Silva, M., Hajdinjak, M., Bergström, A., Booth, T., & Skoglund, P. (2023). Yersinia pestis genomes reveal plague in Britain 4000 years ago. Nature Communications, 14: 2930.
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The COVID-19 Host Genetics Initiative, including authors, Zeberg, H., & Maricic, T. (2023). A second update on mapping the human genetic architecture of COVID-19. Nature, 621, E7-E26.
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Tkaczynski, P. J., Mafessoni, F., Girard-Buttoz, C., Samuni, L., Ackermann, C. Y., Fedurek, P., Gomes, C., Hobaiter, C., Löhrich, T., Manin, V., Preis, A., Valé, P. D., Wessling, E. G., Wittiger, L., Zommers, Z., Zuberbuehler, K., Vigilant, L., Deschner, T., Wittig, R. M., & Crockford, C. (2023). Shared community effects and the non-genetic maternal environment shape cortisol levels in wild chimpanzees. Communications Biology, 6(1): 565.
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Van Gijn, R., Norder, S., Arias, L., Emlen, N. Q., Azevedo, M. C. B. C., Caine, A., Dunn, S., Howard, A., Julmi, N., Krasnoukhova, O., Stoneking, M., & Wiegertjes, J. (2023). The social lives of isolates (and small language families): The case of the Northwest Amazon. Interface Focus, 13(1).
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Wang, K., Yu, H., Radzeviciute, R., Kiryushin, Y. F., Tishkin, A. A., Frolov, Y. V., Stepanova, N. F., Kiryushin, K. Y., Kungurov, A. L., Shnaider, S. V., Tur, S. S., Tiunov, M. P., Zubova, A. V., Pevzner, M., Karimov, T., Buzhilova, A., Slon, V., Jeong, C., Krause, J., & Posth, C. (2023). Middle Holocene Siberian genomes reveal highly connected gene pools throughout North Asia. Current Biology, 33(3), 423-433, e1-e5.
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Westerich, K. J., Reinecke, S., Emich, J., Wyrwoll, M. J., Stallmeyer, B., Meyer, M., Oud, M. S., Fietz, D., Pilatz, A., Kliesch, S., Reichman-Fried, M., Tarbashevich, K., Limon, T., Stehling, M., Friedrich, C., Tüttelmann, F., & Raz, E. (2023). Linking human Dead end 1 (DND1) variants to male infertility employing zebrafish embryos. Human Reproduction, 38(4): dead031, pp. 655-670.
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Woravatin, W., Stoneking, M., Srikummool, M., Kampuansai, J., Arias, L., & Kutanan, W. (2023). South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture. PLoS One, 18: e0291547.
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Yoshiji, S., Butler-Laporte, G., Lu, T., Willett, J. D. S., Su, C.-Y., Nakanishi, T., Morrison, D. R., Chen, Y., Liang, K., Hultström, M., Ilboudo, Y., Afrasiabi, Z., Lan, S., Duggan, N., DeLuca, C., Vaezi, M., Tselios, C., Xue, X., Bouab, M., Shi, F., Laurent, L., Münter, H. M., Afilalo, M., Afilalo, J., Mooser, V., Timpson, N. J., Zeberg, H., Zhou, S., Forgetta, V., Farjoun, Y., & Richards, J. B. (2023). Proteome-wide Mendelian randomization implicates nephronectin as an actionable mediator of the effect of obesity on COVID-19 severity. Nature Metabolism, 5, 248-264.
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2022

Alva, O., Leroy, A., Heiske, M., Pereda-Loth, V., Tisseyre, L., Boland, A., Deleuze, J.-F., Rocha, J., Schlebusch, C., Fortes-Lima, C., Stoneking, M., Radimilahy, C., Rakotoarisoa, J.-A., Letellier, T., & Pierron, D. (2022). The loss of biodiversity in Madagascar is contemporaneous with major demographic events. Current Biology, 32, 4997-5007, e1-e5.
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Barth, L. A. G., Nebe, M., Kalwa, H., Velluva, A., Kehr, S., Kolbig, F., Prabutzki, P., Kiess, W., Le Duc, D., Garten, A., & Kirstein, A. S. (2022). Phospholipid Scramblase 4 (PLSCR4) Regulates Adipocyte Differentiation via PIP3-Mediated AKT Activation. International Journal of Molecular Sciences, 23(17): 9787.
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Brown, S., Massilani, D., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Stoessel, A., Jope-Street, B., Meyer, M., Kelso, J., Pääbo, S., Higham, T., & Douka, K. (2022). The earliest Denisovans and their cultural adaptation. Nature Ecology & Evolution, 6, 28-35.
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Coppo, L., Mishra, P., Siefert, N., Holmgren, A., Pääbo, S., & Zeberg, H. (2022). A substitution in the glutathione reductase lowers electron leakage and inflammation in modern humans. Science Advances, 8(1): eabm1148.
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COVID-19 Genetics Initiative, including authors, Zeberg, H., & Maricic, T. (2022). A first update on mapping the human genetic architecture of COVID-19. Nature, 608, E1-E10.
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Cruz, R., Diz-de Almeida, S., López de Heredia, M., Quintela, I., Ceballos, F. C., Pita, G., Lorenzo-Salazar, J. M., González-Montelongo, R., Gago-Domínguez, M., Sevilla Porras, M., Tenorio Castaño, J. A., Nevado, J., Aguado, J. M., Aguilar, C., Aguilera-Albesa, S., Almadana, V., Almoguera, B., Alvarez, N., Andreu-Bernabeu, Á., Arana-Arri, E., Arango, C., Arranz, M. J., Artiga, M.-J., Baptista-Rosas, R. C., Barreda-Sánchez, M., Belhassen-Garcia, M., Bezerra, J. F., Bezerra, M. A. C., Boix-Palop, L., Brion, M., Brugada, R., Bustos, M., Calderón, E. J., Carbonell, C., Castano, L., Castelao, J. E., Conde-Vicente, R., Cordero-Lorenzana, M. L., Cortes-Sanchez, J. L., Corton, M., Darnaude, M. T., De Martino-Rodríguez, A., del Campo-Pérez, V., Diaz de Bustamante, A., Domínguez-Garrido, E., Luchessi, A. D., Eiros, R., Estigarribia Sanabria, G. M., Carmen Fariñas, M., Fernández-Robelo, U., Fernández-Rodríguez, A., Fernández-Villa, T., Gil-Fournier, B., Gómez-Arrue, J., González Álvarez, B., Gonzalez Bernaldo de Quirós, F., González-Peñas, J., Gutiérrez-Bautista, J. F., Herrero, M. J., Herrero-Gonzalez, A., Jimenez-Sousa, M. A., Lattig, M. C., Liger Borja, A., Lopez-Rodriguez, R., Mancebo, E., Martín-López, C., Martín, V., Martinez-Nieto, O., Martinez-Lopez, I., Martinez-Resendez, M. F., Martinez-Perez, A., Mazzeu, J. F., Merayo Macías, E., Minguez, P., Moreno Cuerda, V., Silbiger, V. N., Oliveira, S. F., Ortega-Paino, E., Parellada, M., Paz-Artal, E., Santos, N. P. C., Pérez-Matute, P., Perez, P., Pérez-Tomás, M. E., Perucho, T., Pinsach-Abuin, M. L., Pompa-Mera, E. N., Porras-Hurtado, G. L., Pujol, A., Ramiro León, S., Resino, S., Fernandes, M. R., Rodríguez-Ruiz, E., Rodriguez-Artalejo, F., Rodriguez-Garcia, J. A., Ruiz Cabello, F., Ruiz-Hornillos, J., Ryan, P., Soria, J. M., Souto, J. C., Tamayo, E., Tamayo-Velasco, A., Taracido-Fernandez, J. C., Teper, A., Torres-Tobar, L., Urioste, M., Valencia-Ramos, J., Yáñez, Z., Zarate, R., Nakanishi, T., Pigazzini, S., Degenhardt, F., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Palom, A., Ellinghaus, D., Martínez-Bueno, M., Rolker, S., Amitrano, S., Roade, L., Fava, F., Spinner, C. D., Prati, D., Bernardo, D., Garcia, F., Darcis, G., Fernández-Cadenas, I., Holter, J. C., Banales, J. M., Frithiof, R., Duga, S., Asselta, R., Pereira, A. C., Romero-Gómez, M., Nafría-Jiménez, B., Hov, J. R., Migeotte, I., Renieri, A., Planas, A. M., Ludwig, K. U., Buti, M., Rahmouni, S., Alarcón-Riquelme, M. E., Schulte, E. C., Franke, A., Karlsen, T. H., Valenti, L., Zeberg, H., Richards, B., Ganna, A., Boada, M., de Rojas, I., Ruiz, A., Sánchez-Juan, P., Real, L. M., SCOURGE Cohort Group, HOSTAGE Cohort Group, GRA@CE Cohort Group, Guillen-Navarro, E., Ayuso, C., González-Neira, A., Riancho, J. A., Rojas-Martinez, A., Flores, C., Lapunzina, P., & Carracedo, A. (2022). Novel genes and sex differences in COVID-19 severity. Human Molecular Genetics, 31(22), 3789-3806.
Open Access    DOI    BibTeX   Endnote   

Dannemann, M., Milaneschi, Y., Yermakovich, D., Stiglbauer, V., Kariis, H. M., Krebs, K., Friese, M. A., Otte, C., Esko, T., Metspalu, A., Milani, L., Mägi, R., Nelis, M., Lehto, K., Penninx, B. W. J. H., Kelso, J., Gold, S. M., & Team, E. B. R. (2022). Neandertal introgression partitions the genetic landscape of neuropsychiatric disorders and associated behavioral phenotypes. Translational Psychiatry, 12: 433.
Open Access    DOI    BibTeX   Endnote   

Fast, L., Ågren, R., & Zeberg, H. (2022). Fluorescence-based measurements of membrane-bound angiotensin converting enzyme 2 activity using Xenopus Laevis Oocytes. Biosensors, 12(8): 601.
Open Access    DOI    BibTeX   Endnote   

Gerber, T., Loureiro, C., Schramma, N., Chen, S., Jain, A., Weber, A., Weigert, A., Santel, M., Alim, K., Treutlein, B., & Camp, J. G. (2022). Spatial transcriptomic and single-nucleus analysis reveals heterogeneity in a gigantic single-celled syncytium. eLife, 11: e69745.
Open Access    DOI    BibTeX   Endnote   

Haeggström, S., Ingelman-Sundberg, M., Pääbo, S., & Zeberg, H. (2022). The clinically relevant CYP2C8*3 and CYP2C9*2 haplotype is inherited from Neandertals. The Pharmacogenomics Journal, 22, 247-249.
Open Access    DOI    BibTeX   Endnote   

He, Z., Maynard, A., Jain, A., Gerber, T., Petri, R., Lin, H.-C., Santel, M., Ly, K., Dupré, J.-S., Sidow, L., Sanchis Calleja, F., Jansen, S. M. J., Riesenberg, S., Camp, J. G., & Treutlein, B. (2022). Lineage recording in human cerebral organoids. Nature Methods, 19(1), 90-99.
Open Access    DOI    BibTeX   Endnote   

Hopkins, R. J. A., Hajdinjak, M., Šefčáková, A., Comeskey, D., Devièse, T., & Higham, T. F. G. (2022). Single amino acid radiocarbon dating of two Neanderthals found at Šal’a (Slovakia). Radiocarbon, 64, 87-100.
DOI    BibTeX   Endnote   

Huffman , J. E., Butler-Laporte , G., Khan , A., Pairo-Castineira, E., Drivas, T. G., Peloso, G. M., Nakanishi , T., COVID-19 Host Genetics Initiative, Ganna, A., Verma, A., Baillie , J. K., Kiryluk, K., Richards , J. B., & Zeberg, H. (2022). Multi-ancestry fine mapping implicates OAS1 splicing in risk of severe COVID-19. Nature Genetics, 54, 125-127.
Open Access    DOI    BibTeX   Endnote   

Jagoda, E., Xue, J. R., Reilly, S. K., Dannemann, M., Racimo, F., Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. C., & Capellini, T. D. (2022). Detection of Neanderthal adaptively introgressed genetic variants that modulate reporter gene expression in human immune cells. Molecular Biology and Evolution, 39(1): msab304.
Open Access    DOI    BibTeX   Endnote   

Kilpatrick, A. M., Rahman, F., Anjum, A., Shome, S., Andalib, K. M. S., Banik, S., Chowdhury, S. F., Coombe, P., Astroz, Y. C., Douglas, J. M., Eranti, P., Kiran, A. D., Kumar, S., Lim, H., Lorenzi, V., Lubiana, T., Mahmud, S., Puche, R., Rybarczyk, A., Sium, A., Muktadir, S., Twesigomwe, D., Zok, T., Orengo, C. A., Friedberg, I., Kelso, J., & Welch, L. (2022). Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia. Bioinformatics, 38(Supplement_1), i19-i27.
Open Access    DOI    BibTeX   Endnote   

Körner, M. B., Velluva, A., Bundalian, L., Radtke, M., Lin, C.-C., Zacher, P., Bartolomaeus, T., Kirstein, A. S., Mrestani, A., Scholz, N., Platzer, K., Teichmann, A.-C., Hentschel, J., Langenhan, T., Lemke, J. R., Garten, A., Abou Jamra, R., & Le Duc, D. (2022). Altered gene expression profiles impair the nervous system development in individuals with 15q13.3 microdeletion. Scientific Reports, 12(1): 13507.
Open Access    DOI    BibTeX   Endnote   

Krumm, J., Sekine, K., Samaras, P., Brazovskaja, A., Breunig, M., Yasui, R., Kleger, A., Taniguchi, H., Wilhelm, M., Treutlein, B., Camp, J. G., & Kuster, B. (2022). High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. Cell Reports, 38: 110604.
Open Access    DOI    BibTeX   Endnote   

Le Duc, D., Velluva, A., Cassatt-Johnstone, M., Olsen, R.-A., Baleka, S., Lin, C.-C., Lemke, J. R., Southon, J. R., Burdin, A., Wang, M.-S., Grunewald, S., Rosendahl, W., Joger, U., Rutschmann, S., Hildebrandt, T. B., Fritsch, G., Estes, J. A., Kelso, J., Dalén, L., Hofreiter, M., Shapiro, B., & Schöneberg, T. (2022). Genomic basis for skin phenotype and cold adaptation in the extinct Steller’s sea cow. Science Advances, 8(5).
Open Access    DOI    BibTeX   Endnote   

Liu, D., Peter, B. M., Schiefenhövel, W., Kayser, M., & Stoneking, M. (2022). Assessing human genome-wide variation in the Massim region of Papua New Guinea and implications for the Kula trading tradition. Molecular Biology and Evolution, 39(8): msac165.
Open Access    DOI    BibTeX   Endnote   

Liu, Q., Iqbal, M. F., Yaqub, T., Firyal, S., Zhao, Y., Stoneking, M., & Li, M. (2022). The transmission of human mitochondrial DNA in four-generation pedigrees. Human Mutation, 43(9), 1259-1267.
Open Access    DOI    BibTeX   Endnote   

Massilani, D., Morley, M. W., Mentzer, S. M., Aldeias, V., Vernot, B., Miller, C., Stahlschmidt, M., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Conard, N. J., Wurz, S., Henshilwood, C. S., Vasquez, J., Essel, E., Nagel, S., Richter, J., Nickel, B., Roberts, R. G., Pääbo, S., Slon, V., Goldberg, P., & Meyer, M. (2022). Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments. Proceedings of the National Academy of Sciences, 119(1): e2113666118.
Open Access    DOI    BibTeX   Endnote   

Mora-Bermúdez, F., Kanis, P., Macak, D., Peters, J., Naumann, R., Xing, L., Sarov, M., Winkler, S., Oegema, C. E., Haffner, C., Wimberger, P., Riesenberg, S., Maricic, T., Huttner, W. B., & Pääbo, S. (2022). Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development. Science Advances, 8: eabn7702.
Open Access    DOI    BibTeX   Endnote   

Mora-Bermúdez, F., Taverna, E., & Huttner, W. B. (2022). From stem and progenitor cells to neurons in the developing neocortex: Key differences among hominids. The FEBS Journal, 289(6), 1524-1535.
Open Access    DOI    BibTeX   Endnote   

Nebe, M., Kehr, S., Schmitz, S., Breitfeld, J., Lorenz, J., Le Duc, D., Stadler, P. F., Meiler, J., Kiess, W., Garten, A., & Kirstein, A. S. (2022). Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells. Biochemical and Biophysical Research Communications, 604, 57-62.
Open Access    DOI    BibTeX   Endnote   

Oliveira, S., Nägele, K., Carlhoff, S., Pugach, I., Koesbardiati, T., Hübner, A., Meyer, M., Oktaviana, A. A., Takenaka, M., Katagiri, C., Murti, D. B., Putri, R. S., Mahirta, Petchey, F., Higham, T., Higham, C., O’Connor, S., Hawkins, S., Kinaston, R., Bellwood, P., Ono, R., Powell, A., Krause, J., Posth, C., & Stoneking, M. (2022). Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nature Ecology & Evolution, 6, 1024-1034.
Open Access    DOI    BibTeX   Endnote   

Oskolkov, N., Santel, M., Parikh, H. M., Ekström, O., Camp, J. G., Miyamoto-Mikami, E., Ström, K., Mir, B. A., Kryvokhyzha, D., Lehtovirta, M., Kobayashi, H., Kakigi, R., Naito, H., Eriksson, K.-F., Nystedt, B., Fuku, N., Treutlein, B., Pääbo, S., & Hansson, O. (2022). High-throughput muscle fiber typing from RNA sequencing data. Skeletal Muscle, 12: 16.
Open Access    DOI    BibTeX   Endnote   

Oxilia, G., Bortolini, E., Marciani, G., Menghi Sartorio, J. C., Vazzana, A., Bettuzzi, M., Panetta, D., Arrighi, S., Badino, F., Figus, C., Lugli, F., Romandini, M., Silvestrini, S., Sorrentino, R., Moroni, A., Donadio, C., Morigi, M. P., Slon, V., Piperno, M., Talamo, S., Collina, C., & Benazzi, S. (2022). Direct evidence that late Neanderthal occupation precedes a technological shift in southwestern Italy. American Journal of Biological Anthropology, 179(1), 18-30.
Open Access    DOI    BibTeX   Endnote   

Peter, B. M. (2022). A geometric relationship of F2, F3 and F4-statistics with principal component analysis. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1852): 20200413.
Open Access    DOI    BibTeX   Endnote   

Peyrégne, S., Kelso, J., Peter, B. M., & Pääbo, S. (2022). The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals. eLife, 11: e75464.
Open Access    DOI    BibTeX   Endnote   

Pietzner, M., Chua, R. L., Wheeler, E., Jechow, K., Willett, J. D. S., Radbruch, H., Trump, S., Heidecker, B., Zeberg, H., Heppner, F. L., Eils, R., Mall, M. A., Richards, J. B., Sander, L.-E., Lehmann, I., Lukassen, S., Wareham, N. J., Conrad, C., & Langenberg, C. (2022). ELF5 is a potential respiratory epithelial cell-specific risk gene for severe COVID-19. Nature Communications, 13: 4484.
Open Access    DOI    BibTeX   Endnote   

Pinson, A., Xing, L., Namba, T., Kalebic, N., Peters, J., Oegema, C. E., Traikov, S., Reppe, K., Riesenberg, S., Maricic, T., Derihaci, R., Wimberger, P., Pääbo, S., & Huttner, W. B. (2022). Human TKTL1 implies greater neurogenesis in frontal neocortex of modern humans than Neanderthals. Science, 377(6611): eabl6422, pp. 1170.
DOI    BibTeX   Endnote   

Riesenberg, S., Helmbrecht, N., Kanis, P., Maricic, T., & Pääbo, S. (2022). Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage. Nature Communications, 13: 489.
Open Access    DOI    BibTeX   Endnote   

Rocha, J. L., Vaz Pinto, P., Siegismund, H. R., Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N., & Godinho, R. (2022). African climate and geomorphology drive evolution and ghost introgression in sable antelope. Molecular Ecology, 31(10), 2968-2984.
DOI    BibTeX   Endnote   

Rodriguez, J., Cuales, J. M. D., Herrera, M. J. B., Zubiri, L. A. M., Muallil, R. N., Ishmael, A. I., Jimenez, E. B., Stoneking, M., & De Ungria, M. C. A. (2022). Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago. Frontiers in Genetics, 13: 901515.
Open Access    DOI    BibTeX   Endnote   

Silén, C., Karlgren, K., Hjelmqvist, H., Meister, B., Zeberg, H., & Pettersson, A. (2022). Three-dimensional visualisation of authentic cases in anatomy learning – An educational design study. BMC Medical Education, 22(477).
Open Access    DOI    BibTeX   Endnote   

Skov, L., Peyrégne, S., Popli, D. R., Iasi, L. N., Devièse, T., Slon, V., Zavala, E. I., Hajdinjak, M., Sümer, A., Grote, S., Bossoms Mesa, A., López Herráez, D., Nickel, B., Nagel, S., Richter, J., Essel, E., Gansauge, M.-T., Schmidt, A., Korlevic, P., Comeskey, D., Derevianko, A. P., Kharevich, A., Markin, S. V., Talamo, S., Douka, K., Krajcarz, M. T., Roberts, R. G., Higham, T., Viola, B., Krivoshapkin, A. I., Kolobova, K. A., Kelso, J., Meyer, M., Pääbo, S., & Peter, B. M. (2022). Genetic insights into the social organization of Neanderthals. Nature, 610, 519-525.
Open Access    DOI    BibTeX   Endnote   

Slon, V., Clark, J. L., Friesem, D. E., Orbach, M., Porat, N., Meyer, M., Kandel, A. W., & Shimelmitz, R. (2022). Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israel. Scientific Reports, 12: 14528.
Open Access    DOI    BibTeX   Endnote   

Wollny, D., Vernot, B., Wang, J., Hondele, M., Safrastyan, A., Aron, F., Micheel, J., He, Z., Hyman, A., Weis, K., Camp, J. G., Tang, T. D., & Treutlein, B. (2022). Characterization of RNA content in individual phase-separated coacervate microdroplets. Nature Communications, 13: 2626.
Open Access    DOI    BibTeX   Endnote   

Yu, H., Loosdrecht, M. S. v. d., Mannino, M. A., Talamo, S., Rohrlach, A. B., Childebayeva, A., Villalba-Mouco, V., Aron, F., Brandt, G., Burri, M., Freund, C., Radzeviciute, R., Stahl, R., Wissgott, A., Fewlass, H., Tagliacozzo, A., Piperno, M., Tusa, S., Collina, C., Schimmenti, V., Di Salvo, R., Prüfer, K., Posth, C., Hublin, J.-J., Gronenborn, D., Binder, D., Jeong, C., Haak, W., & Krause, J. (2022). Genomic and dietary discontinuities during the Mesolithic and Neolithic in Sicily. iScience, 5(25): 104244.
Open Access    DOI    BibTeX   Endnote   

Zavala, E. I., Ayinuer-Petri, A., Richter, J., Nickel, B., Vernot, B., & Meyer, M. (2022). Quantifying and reducing cross‐contamination in single‐ and multiplex hybridization capture of ancient DNA. Molecular Ecology Resources, 22(6), 2196-2207.
Open Access    DOI    BibTeX   Endnote   

Zavala, E. I., Thomas, J. T., Sturk-Andreaggi, K., Daniels-Higginbotham, J., Meyers, K. K., Barrit-Ross, S., Ayinuer-Petri, A., Richter, J., Nickel, B., Berg, G. E., McMahon, T. P., Meyer, M., & Marshall, C. (2022). Ancient DNA methods improve forensic DNA profiling of Korean War and World War II unknowns. Genes, 13(129).
Open Access    DOI    BibTeX   Endnote   

Zeberg, H. (2022). The major genetic risk factor for severe COVID-19 is associated with protection against HIV. Proceedings of the National Academy of Sciences of the United States of America, 119(9): e2116435119.
Open Access    DOI    BibTeX   Endnote   

2021

Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46.
DOI    BibTeX   Endnote   

Berger, C., Heyne, H. O., Heiland, T., Dommel, S., Höfling, C., Guiu-Jurado, E., Lorenz, J., Roßner, S., Dannemann, M., Kelso, J., Kovacs, P., Blüher, M., & Klöting, N. (2021). A novel compound heterozygous leptin receptor mutation causes more severe obesity than in Lepr mice. Journal of Lipid Research, 62: 100105.
Open Access    DOI    BibTeX   Endnote   

Bokelmann, L., Nickel, O., Maricic, T., Pääbo, S., Meyer, M., Borte, S., & Riesenberg, S. (2021). Point-of-care bulk testing for SARS-CoV-2 by combining hybridization capture with improved colorimetric LAMP. Nature Communications, 12(1): 1467.
Open Access    DOI    BibTeX   Endnote   

Carlhoff, S., Duli, A., Nägele, K., Nur, M., Skov, L., Sumantri, I., Oktaviana, A. A., Hakim, B., Burhan, B., Syahdar, F. A., McGahan, D. P., Bulbeck, D., Perston, Y. L., Newman, K., Saiful, A. M., Ririmasse, M., Chia, S., Hasanuddin, Pulubuhu, D. A. T., Suryatman, Supriadi, Jeong, C., Peter, B. M., Prüfer, K., Powell, A., Krause, J., Posth, C., & Brumm, A. (2021). Genome of a middle Holocene hunter-gatherer from Wallacea. Nature, 596, 543-547.
Open Access    DOI    BibTeX   Endnote   

Choin, J., Mendoza-Revilla, J., Arauna, L. R., Cuadros-Espinoza, S., Cassar, O., Larena, M., Ko, A.-M.-S., Harmant, C., Laurent, R., Verdu, P., Laval, G., Boland, A., Olaso, R., Deleuze, J.-F., Valentin, F., Ko, Y.-C., Jakobsson, M., Gessain, A., Excoffier, L., Stoneking, M., Patin, E., & Quintana-Murci, L. (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), 583-589.
DOI    BibTeX   Endnote   

COVID-19 Host Genetics initiative, including authors, Zeberg, H., Niemi, M. E. K., Karjalainen, J., Liao, R. G., Neale, B. M., Daly, M., Ganna, A., Pathak, G. A., Andrews, S. J., Kanai, M., Veerapen, K., Fernandez-Cadenas, I., Schulte, E. C., Striano, P., Marttila, M., Minica, C., Marouli, E., Karim, M. A., Wendt, F. R., Savage, J., Sloofman, L., Butler-Laporte, G., Kim, H.-N., Kanoni, S., Okada, Y., Byun, J., Han, Y., Uddin, M. J., Smith, G. D., Willer, C. J., Buxbaum, J. D., Mehtonen, J., Finucane, H., Cordioli, M., Martin, A. R., Zhou, W., Pasaniuc, B., Julienne, H., Aschard, H., Shi, H., Yengo, L., Polimanti, R., Ghoussaini, M., Schwartzentruber, J., Dunham, I., Chwialkowska, K., Francescatto, M., Trankiem, A., Balaconis, M. K., Davis, L., Lee, S., Priest, J., Renieri, A., Sankaran, V. G., van Heel, D., Deelen, P., Richards, J. B., Nakanishi, T., Biesecker, L., Kerchberger, V. E., Baillie, J. K., Mari, F., Bernasconi, A., Baillie, S. C., Canakoglu, A., Wolford, B., Faucon, A., Dutta, A. K., Schurmann, C., Harry, E., Birney, E., Nguyen, H., Nasir, J., Kaunisto, M., Solomonson, M., Dueker, N., Vadgama, N., Limou, S., Rahmouni, S., Mbarek, H., Darwish, D., Uddin, M. M., Albertos, R., Pérez-Tur, J., Li, R., Folkersen, L., Moltke, I., Koelling, N., Teumer, A., Kousathanas, A., Utrilla, A., Verdugo, R. A., Zárate, R., Medina-Gómez, C., Gómez-Cabrero, D., Carnero-Montoro, E., Cadilla, C. L., Moreno-Estrada, A., Garmendia, A., Moya, L., Sedaghati-Khayat, B., Boua, P. R., Favé, M.-J., Francioli, L., Lemaçon, A., Migeotte, I., Patel, S., Varnai, R., Szentpeteri, J. L., Sipeky, C., Colombo, F., von Hohenstaufen, K., Lio, P., Vallerga, C., Wang, Q., Tanigawa, Y., Im, H., Han, C., Song, H., Lim, J., Lee, Y., Kim, S., Im, S., Atanasovska, B., Ahmad, H. F., Boer, C., Jansen, P., Franke, L., Kaja, E., Pasko, D., Kennis-Szilagyi, I., Kornilov, S. A., Prijatelj, V., Prokić, I., Sivanadhan, I., Perumal, S., Esmaeeli, S., Pearson, N. M., Auton, A., Shelton, J. F., Shastri, A. J., Filshtein-Sonmez, T., Coker, D., Symons, A., Esparza-Gordillo, J., Aslibekyan, S., O’Connell, J., Ye, C., Weldon, C. H., Perera, M., O’Leary, K., Tuck, M., O’Brien, T., Meltzer, D., O’Donnell, P., Nutescu, E., Yang, G., Alarcon, C., Herrmann, S., Mazurek, S., Banagan, J., Hamidi, Z., Barbour, A., Raffat, N., Moreno, D., Friedman, P., Ferwerda, B., van de Beek, D., Brouwer, M. C., Vlaar, A. P. J., Wiersinga, W. J., Posthuma, D., Tissink, E., Zwinderman, K. H. A., Uffelmann, E., van Agtmael, M., Algera, A. G., van Baarle, F., Bax, D., Beudel, M., Jan Bogaard, H., Bomers, M., Bonta, P. I., Bos, L., Botta, M., de Brabander, J., de Bree, G., de Bruin, S., Bugiani, M., Bulle, E., Chouchane, O., Cloherty, A., Dongelmans, D., Elbers, P., Fleuren, L., Geerlings, S., Geerts, B., Geijtenbeek, T., Girbes, A., Goorhuis, B., Grobusch, M. P., Hafkamp, F., Hagens, L., Hamann, J., Harris, V., Hemke, R., Hermans, S. M., Heunks, L., Hollmann, M., Horn, J., Hovius, J. W., de Jong, D. M., Koning, R., van Mourik, N., Nellen, J., Nossent, E. J., Paulus, F., Peters, E., van der Poll, T., Preckel, B., Prins, J. M., Raasveld, J., Reijnders, T., Schinkel, M., Schultz, M. J., Schuurman, A., Sigaloff, K., Smit, M., Stijnis, C. S., Stilma, W., Teunissen, C., Thoral, P., Tsonas, A., van der Valk, M., Veelo, D., de Vries, H., van Vugt, M., Wouters, D., Minnaar, R. P., Kromhout, A., van Uffelen, J. K. W., Wolterman, R. A., Roberts, G., Park, D., Ball, C. A., Coignet, M., McCurdy, S., Knight, S., Partha, R., & Rhead, B. (2021). Mapping the human genetic architecture of COVID-19. Nature, 600(7889), 472-477.
Open Access    DOI    BibTeX   Endnote   

Devièse, T., Abrams, G., Hajdinjak, M., Pirson, S., De Groote, I., Di Modica, K., Toussaint, M., Fischer, V., Comeskey, D., Spindler, L., Meyer, M., Semal, P., & Higham, T. (2021). Reevaluating the timing of Neanderthal disappearance in Northwest Europe. Proceedings of the National Academy of Sciences, 118(12): e2022466118.
DOI    BibTeX   Endnote   

Devièse, T., Abrams, G., Hajdinjak, M., Pirson, S., De Groote, I., Di Modica, K., Toussaint, M., Fischer, V., Comeskey, D., Spindler, L., Meyer, M., Semal, P., & Higham, T. (2021). Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave. Proceedings of the National Academy of Sciences of the United States of America, 118(26): e2107116118.
DOI    BibTeX   Endnote   

Essel, E., Korlević, P., & Meyer, M. (2021). A method for the temperature-controlled extraction of DNA from ancient bones. Biotechniques, 71(1), 383-387.
Open Access    DOI    BibTeX   Endnote   

Evans, B. J., Peter, B., Melnick, D. J., Andayani, N., Supriatna, J., Zhu, J., & Tosi, A. J. (2021). Mitonuclear interactions and introgression genomics of macaque monkeys (Macaca) highlight the influence of behaviour on genome evolution. Proceedings of the Royal Society B: Biological Sciences, 288(1960): 20211756.
DOI    BibTeX   Endnote   

Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2021). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31.
Open Access    DOI    BibTeX   Endnote   

Fleck, J. S., Sanchís-Calleja, F., He, Z., Santel, M., Boyle, M. J., Camp, J. G., & Treutlein, B. (2021). Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases. Cell Stem Cell, 28, 1148-1159.
DOI    BibTeX   Endnote   

Gjermeni, E., Kirstein, A. S., Kolbig, F., Kirchhof, M., Bundalian, L., Katzmann, J. L., Laufs, U., Blüher, M., Garten, A., & Le Duc, D. (2021). Obesity – an update on the basic pathophysiology and review of recent therapeutic advances. Biomolecules, 11(10): 1426.
Open Access    DOI    BibTeX   Endnote   

Guo, S., Huang, S., Jiang, X., Hu, H., Han, D., Moreno, C. S., Fairbrother, G. L., hughes, D. A., Stoneking, M., & Khaitovich, P. (2021). Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn. BMC Genomics, 22: 286.
Open Access    DOI    BibTeX   Endnote   

Hajdinjak, M., Mafessoni, F., Skov, L., Vernot, B., Hübner, A., Fu, Q., Essel, E., Nagel, S., Nickel, B., Richter, J., Moldovan, O. T., Constantin, S., Endarova, E., Zahariev, N., Spasov, R., Welker, F., Smith, G. M., Sinet-Mathiot, V., Paskulin, L., Fewlass, H., Talamo, S., Rezek, Z., Sirakova, S., Sirakov, N., McPherron, S. P., Tsanova, T., Hublin, J.-J., Peter, B., Meyer, M., Skoglund, P., Kelso, J., & Pääbo, S. (2021). Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry. Nature, 592, 253-257.
Open Access    DOI    BibTeX   Endnote   

Hodgkins, J., Orr, C. M., Gravel-Miguel, C., Riel-Salvatore, J., Miller, C. E., Bondioli, L., Nava, A., Lugli, F., Talamo, S., Hajdinjak, M., Cristiani, E., Romandini, M., Meyer, D., Drohobytsky, D., Kuester, F., Pothier-Bouchard, G., Buckley, M., Mancini, L., Baruffaldi, F., Silvestrini, S., Arrighi, S., Keller, H. M., Griggs, R. B., Peresani, M., Strait, D. S., Benazzi, S., & Negrino, F. (2021). An infant burial from Arma Veirana in northwestern Italy provides insights into funerary practices and female personhood in early Mesolithic Europe. Scientific Reports, 11: 23735.
Open Access    DOI    BibTeX   Endnote   

Hou, Q.-Q., Xiao, Q., Sun, X.-Y., Ju, X.-C., & Luo, Z.-G. (2021). TBC1D3 promotes neural progenitor proliferation by suppressing the histone methyltransferase G9a. Science Advances, 7: eaba8053.
Open Access    DOI    BibTeX   Endnote   

Iasi, L. N., Ringbauer, H., & Peter, B. (2021). An extended admixture pulse model reveals the limitations to human-Neandertal introgression dating. Molecular Biology and Evolution, 38(11), 5156-5174.
Open Access    DOI    BibTeX   Endnote   

Jauss, R.-T., Nowack, A., Walden, S., Wolf, R., Schaffer, S., Schellbach, B., Bonkowski, M., & Schlegel, M. (2021). To the canopy and beyond: Air dispersal as a mechanism of ubiquitous protistan pathogen assembly in tree canopies. European Journal of Protistology, 80: 125805.
Open Access    DOI    BibTeX   Endnote   

Kirstein, A. S., Kehr, S., Nebe, M., Hanschkow, M., Barth, L. A., Lorenz, J., Penke, M., Breitfeld, J., Le Duc, D., Landgraf, K., Körner, A., Kovacs, P., Stadler, P. F., Kiess, W., & Garten, A. (2021). PTEN regulates adipose progenitor cell growth, differentiation, and replicative aging. Journal of Biological Chemistry, 297(2): 100968.
Open Access    DOI    BibTeX   Endnote   

Kutanan, W., Liu, D., Kampuansai, J., Srikummool, M., Srithawong, S., Shoocongdej, R., Sangkhano, S., Ruangchai, S., Pittayaporn, P., Arias, L., & Stoneking, M. (2021). Reconstructing the human genetic history of mainland Southeast Asia: Insights from genome-wide data from Thailand and Laos. Molecular Biology and Evolution, 38(8), 3459-3477.
Open Access    DOI    BibTeX   Endnote   

Kyrousi, C., O’Neill, A. C., Brazovskaja, A., He, Z., Kielkowski, P., Coquand, L., Di Giaimo, R., D’ Andrea, P., Belka, A., Forero Echeverry, A., Mei, D., Lenge, M., Cruceanu, C., Buchsbaum, I. Y., Khattak, S., Fabien, G., Binder, E., Elmslie, F., Guerrini, R., Baffet, A. D., Sieber, S. A., Treutlein, B., Robertson, S. P., & Cappello, S. (2021). Extracellular LGALS3BP regulates neural progenitor position and relates to human cortical complexity. Nature Communications, 12(1): 6298.
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Le Duc, D., Hentschel, J., Neuser, S., Stiller, M., Meier, C., Jäger, E., Abou Jamra, R., Platzer, K., Monecke, A., Ziemer, M., Markovic, A., Bläker, H., & Lemke, J. R. (2021). In cis TP53 and RAD51C pathogenic variants may predispose to sebaceous gland carcinomas. European Journal of Human Genetics, 29, 489-494.
Open Access    DOI    BibTeX   Endnote   

Lin, H.-C., He, Z., Ebert, S., Schörnig, M., Santel, M., Nikolova, M. T., Weigert, A., Hevers, W., Kasri, N. N., Taverna, E., Camp, J. G., & Treutlein, B. (2021). NGN2 induces diverse neuron types from human pluripotency. Stem Cell Reports, 16, 2118-2127.
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Lin, T.-Y., Gerber, T., Taniguchi-Sugiura, Y., Murawala, P., Hermann, S., Grosser, L., Shibata, E., Treutlein, B., & Tanaka, E. M. (2021). Fibroblast dedifferentiation as a determinant of successful regeneration. Developmental Cell, 56(10), 1541-1551.e6.
Open Access    DOI    BibTeX   Endnote   

Mafessoni, F., Lachmann, M., & Gokhale, C. S. (2021). On the fitness of informative cues in complex environments. Journal of Theoretical Biology, 527: 110819.
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Maricic, T., Helmbrecht, N., Riesenberg, S., Macak, D., Kanis, P., Lackner, M., Pugach-Matveeva, A. D., & Pääbo, S. (2021). Comment on “Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment”. Science, 374(6565), 269.
DOI    BibTeX   Endnote   

Martinón-Torres, M., d’Errico, F., Santos, E., Álvaro Gallo, A., Amano, N., Archer, W., Armitage, S. J., Arsuaga, J. L., de Castro, B., María, J., Blinkhorn, J., Crowther, A., Douka, K., Dubernet, S., Faulkner, P., Fernández-Colón, P., Kourampas, N., González García, J., Larreina, D., Le Bourdonnec, F.-X., MacLeod, G., Martín-Francés, L., Massilani, D., Mercader, J., Miller, J. M., Ndiema, E., Notario, B., Pitarch Martí, A., Prendergast, M. E., Queffelec, A., Rigaud, S., Roberts, P., Shoaee, M. J., Shipton, C., Simpson, I., Boivin, N., & Petraglia, M. D. (2021). Earliest known human burial in Africa. Nature, 593(7857), 95-100.
DOI    BibTeX   Endnote   

Matsumae, H., Ranacher, P., Savage, P. E., Blasi, D. E., Currie, T. E., Koganebuchi, K., Nishida, N., Sato, T., Tanabe, H., Tajima, A., Brown, S., Stoneking, M., Shimizu, K. K., Oota, H., & Bickel, B. (2021). Exploring correlations in genetic and cultural variation across language families in northeast Asia. Science Advances, 7(34): eabd9223.
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Nakanishi, T., Pigazzini, S., Degenhardt, F., Cordioli, M., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Niemi, M. E., Palom, A., Ellinghaus, D., Khan, A., Martínez-Bueno, M., Rolker, S., Amitrano, S., Tato, L. R., Fava, F., FinnGen, (HGI), T.-C.-1.-H.-G.-I., Spinner, C. D., Prati, D., Bernardo, D., Garcia, F., Darcis, G., Fernández-Cadenas, I., Holter, J. C., Banales, J. M., Frithiof, R., Kiryluk, K., Duga, S., Asselta, R., Pereira, A. C., Romero-Gómez, M., Nafría-Jiménez, B., Hov, J. R., Migeotte, I., Renieri, A., Planas, A. M., Ludwig, K. U., Buti, M., Rahmouni, S., Alarcón-Riquelme, M. E., Schulte, E. C., Franke, A., Karlsen, T. H., Valenti, L., Zeberg, H., Richards, J. B., & Ganna, A. (2021). Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality. The Journal of Clinical Investigation, 131(23).
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Overcast, I., Ruffley, M., Rosindell, J., Harmon, L., Borges, P. A. V., Emerson, B. C., Etienne, R. S., Gillespie, R., Krehenwinkel, H., Mahler, D. L., Massol, F., Parent, C. E., Patiño, J., Peter, B., Week, B., Wagner, C., Hickerson, M. J., & Rominger, A. (2021). A unified model of species abundance, genetic diversity, and functional diversity reveals the mechanisms structuring ecological communities. Molecular Ecology Resources, 21(8), 2782-2800.
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Pakendorf, B., & Stoneking, M. (2021). The genomic prehistory of peoples speaking Khoisan languages. Human Molecular Genetics, 30(2), R49-R55.
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Picin, A., Benazzi, S., Blasco, R., Hajdinjak, M., Helgen, K. M., Hublin, J.-J., Rosell, J., Skoglund, P., Stringer, C., & Talamo, S. (2021). Comment on “A global environmental crisis 42,000 years ago”. Science, 374(6570): eabi8330.
DOI    BibTeX   Endnote   

Pugach, I., Hübner, A., Hung, H.-c., Meyer, M., Carson, M. T., & Stoneking, M. (2021). Ancient DNA from Guam and the peopling of the Pacific. Proceedings of the National Academy of Sciences, 118(1): e202211211.
Open Access    DOI    BibTeX   Endnote   

Reinscheid, R. K., Mafessoni, F., Lüttjohann, A., Jüngling, K., Pape, H.-C., & Schulz, S. (2021). Neandertal introgression and accumulation of hypomorphic mutations in the neuropeptide S (NPS) system promote attenuated functionality. Peptides, 138: 170506.
DOI    BibTeX   Endnote   

Schörnig, M., & Taverna, E. (2021). A closer look to the evolution of neurons in humans and apes using stem-cell-derived model systems. Frontiers in Cell and Developmental Biology, 9: 661113.
Open Access    DOI    BibTeX   Endnote   

Schörnig, M., Ju, X.-C., Fast, L., Weigert, A., Schaffer, T., Ebert, S., Treutlein, B., Kasri, N. N., Peter, B., Hevers, W., & Taverna, E. (2021). Comparison of induced neurons reveals slower structural and functional maturation in humans than in apes. eLife, 10: e59323.
Open Access    DOI    BibTeX   Endnote   

Shull, G., Haffner, C., Huttner, W. B., Taverna, E., & Kodandaramaiah, S. B. (2021). Manipulation of Single Neural Stem Cells and Neurons in Brain Slices using Robotic Microinjection. Journal of Visualized Experiments, 167: e61599.
DOI    BibTeX   Endnote   

Silvestrini, S., Romandini, M., Marciani, G., Arrighi, S., Carrera, L., Fiorini, A., López-García, J. M., Lugli, F., Ranaldo, F., Slon, V., Tassoni, L., Higgins, O. A., Bortolini, E., Curci, A., Meyer, M., Meyer, M. C., Oxilia, G., Zerboni, A., Benazzi, S., & Spinapolice, E. E. (2021). Integrated multidisciplinary ecological analysis from the Uluzzian settlement at the Uluzzo C Rock Shelter, south-eastern Italy. Journal of Quaternary Science, 37(2): jqs.3341, pp. 235-256.
DOI    BibTeX   Endnote   

Srithawong, S., Muisuk, K., Srikummool, M., Kampuansai, J., Pittayaporn, P., Ruangchai, S., Liu, D., & Kutanan, W. (2021). Close genetic relationship between central Thai and Mon people in Thailand revealed by autosomal microsatellites. International Journal of Legal Medicine, 135, 445-448.
DOI    BibTeX   Endnote   

Stepanova, V., Moczulska, K., Vacano, G. N., Kurochkin, I., Ju, X.-C., Riesenberg, S., Macak, D., Maricic, T., Dombrowski, L., Schörnig, M., Anastassiadis, K., Baker, O., Naumann, R., Khrameeva, E., Vanushkina, A., Stekolschikova, E., Egorova, A., Nkatchev, A., Mazzarino, R., Duval, N., Zubkov, D., Giavalisco, P., Wilkinson, T. G., Patterson, D., Khaitovich, P., & Pääbo, S. (2021). Reduced purine biosynthesis in humans after their divergence from Neandertals. eLife, 10: e58741.
Open Access    DOI    BibTeX   Endnote   

Stoneking, M. (2021). Genomic insights into the Out-of-Africa dispersal(s) of modern humans. In M. d. L. Muñoz-Moreno, & M. H. Crawford (Eds.), Human migration: Biocultural perspectives (pp. 9-19). Oxford: Oxford University Press.
BibTeX   Endnote   

Suchý, T., Kaczmarek, I., Maricic, T., Zieschang, C., Schöneberg, T., Thor, D., & Liebscher, I. (2021). Evaluating the feasibility of Cas9 overexpression in 3T3-L1 cells for generation of genetic knock-out adipocyte cell lines. Adipocyte, 10(1), 631-645.
Open Access    DOI    BibTeX   Endnote   

Troitzsch, D., Zhang, H., Dittmann, S., Düsterhöft, D., Möller, T. A., Michel, A.-M., Jänsch, L., Riedel, K., Borrero-de Acuña, J. M., Jahn, D., & Sievers, S. (2021). A point mutation in the transcriptional repressor PerR results in a constitutive oxidative stress response in Clostridioides difficile 630Δerm. mSphere, 6(2): e00091-21.
Open Access    DOI    BibTeX   Endnote   

Trucchi, E., Gratton, P., Mafessoni, F., Motta, S., Cicconardi, F., Bertorelle, G., D’Annessa, I., & Marino, D. D. (2021). Population dynamics and structural effects at short and long range support the hypothesis of the selective advantage of the G614 SARS-CoV-2 spike variant. Molecular Biology and Evolution, 38(5), 1966-1979.
Open Access    DOI    BibTeX   Endnote   

Velluva, A., Radtke, M., Horn, S., Popp, B., Platzer, K., Gjermeni, E., Lin, C.-C., Lemke, J. R., Garten, A., Schöneberg, T., Blüher, M., Abou Jamra, R., & Le Duc, D. (2021). Phenotype-tissue expression and exploration (PTEE) resource facilitates the choice of tissue for RNA-seq-based clinical genetics studies. BMC Genomics, 22(802).
Open Access    DOI    BibTeX   Endnote   

Vernot, B., Zavala, E. I., Gómez-Olivencia, A., Jacobs, Z., Slon, V., Mafessoni, F., Romagné, F., Pearson, A., Petr, M., Sala, N., Pablos, A., Aranburu, A., de Castro, J. M. B., Carbonell, E., Li, B., Krajcarz, M. T., Krivoshapkin, A. I., Kolobova, K. A., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Grote, S., Essel, E., López Herráez, D., Nagel, S., Nickel, B., Richter, J., Schmidt, A., Peter, B., Kelso, J., Roberts, R. G., Arsuaga, J.-L., & Meyer, M. (2021). Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments. Science, eabf1667.
DOI    BibTeX   Endnote   

Zavala, E. I., Jacobs, Z., Vernot, B., Shunkov, M. V., Kozlikin, M. B., Derevianko, A. P., Essel, E., de Filippo, C., Nagel, S., Richter, J., Romagné, F., Schmidt, A., Li, B., O’Gorman, K., Slon, V., Kelso, J., Pääbo, S., Roberts, R. G., & Meyer, M. (2021). Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave. Nature, 595, 399-403.
Open Access    DOI    BibTeX   Endnote   

Zeberg, H., & Pääbo, S. (2021). A genomic region associated with protection against severe COVID-19 is inherited from Neandertals. Proceedings of the National Academy of Sciences, 118(9): e2026309118.
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2020

Balzeau, A., Turq, A., Talamo, S., Daujeard, C., Guérin, G., Welker, F., Crevecoeur, I., Fewlass, H., Hublin, J.-J., Lahaye, C., Maureille, B., Meyer, M., Schwab, C., & Gómez-Olivencia, A. (2020). Pluridisciplinary evidence for burial for the La Ferrassie 8 Neandertal child. Scientific Reports, 10: 21230.
Open Access    DOI    BibTeX   Endnote   

Bokelmann, L., Glocke, I., & Meyer, M. (2020). Reconstructing double-stranded DNA fragments on a single-molecule level reveals patterns of degradation in ancient samples. Genome Research, 30(10), 1449-1457.
DOI    BibTeX   Endnote   

Braadbaart, F., Reidsma, F., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, K., Kaal, J., van Os, B., & Marquer, L. (2020). Heating histories and taphonomy of ancient fireplaces: A multi-proxy case study from the Upper Palaeolithic sequence of Abri Pataud (Les Eyzies-de-Tayac, France). Journal of Archaeological Science: Reports, 33: 102468.
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Cauret, C. M. S., Gansauge, M.-T., Tupper, A. S., Furman, B. L. S., Knytl, M., Song, X., Greenbaum, E., Meyer, M., & Evans, B. J. (2020). Developmental systems drift and the drivers of sex chromosome evolution. Molecular Biology and Evolution, 37(3), 799-808.
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Dannemann, M., He, Z., Heide, C., Vernot, B., Sidow, L., Kanton, S., Weigert, A., Treutlein, B., Pääbo, S., Kelso, J., & Camp, J. G. (2020). Human stem cell resources are an inroad to Neandertal DNA functions. Stem Cell Reports, 15, 214-225.
Open Access    DOI    BibTeX   Endnote   

Evans, B. J., Gansauge, M.-T., Tocheri, M. W., Schillaci, M. A., Sutikna, T., Jatmiko, Saptomo, E. W., Klegarth, A., Tosi, A. J., Melnick, D. J., & Meyer, M. (2020). Mitogenomics of macaques (Macaca) across Wallace's Line in the context of modern human dispersals. Journal of Human Evolution, 146: 102852.
Open Access    DOI    BibTeX   Endnote   

Gansauge, M.-T., Aximu-Petri, A., Nagel, S., & Meyer, M. (2020). Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA. Nature Protocols, 15, 2279-2300.
DOI    BibTeX   Endnote   

Gunnarsdottir, E. D., & Stoneking, M. (2020). Genetic Landscape of Present-Day Hunter-Gatherer Groups. In T. Güldemann (Ed.), Language of Hunter-Gatherers (pp. 49-75). Cambridge: Cambridge University Press.
BibTeX   Endnote   

He, Z., Brazovskaja, A., Ebert, S., Camp, J. G., & Treutlein, B. (2020). CSS: Cluster similarity spectrum integration of single-cell genomics data. Genome Biology, 21: 224.
Open Access    DOI    BibTeX   Endnote   

Hublin, J.-J., Sirakov, N., Aldeias, V., Bailey, S., Bard, E., Delvigne, V., Endarova, E., Fagault, Y., Fewlass, H., Hajdinjak, M., Kromer, B., Krumov, I., Marreiros, J., Martisius, N. L., Paskulin, L., Sinet-Mathiot, V., Meyer, M., Pääbo, S., Popov, V., Rezek, Z., Sirakova, S., Skinner, M. M., Smith, G. M., Spasov, R., Talamo, S., Tuna, T., Wacker, L., Welker, F., Wilcke, A., Zahariev, N., McPherron, S. P., & Tsanova, T. (2020). Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria. Nature, 581(7808), 299-302.
DOI    BibTeX   Endnote   

Kanton, S., Treutlein, B., & Camp, J. G. (2020). Single-cell genomic analysis of human cerebral organoids. In J. R. Spence (Ed.), Human Pluripotent Stem Cell Derived Organoid Models (pp. 229-256). Elsevier.
DOI    BibTeX   Endnote   

Key, F. M., Posth, C., Esquivel-Gomez, L. R., Hübler, R., Spyrou, M. A., Neumann, G., Furtwängler, A., Sabin, S., Burri, M., Wissgott, A., Lankapalli, A. K., Vågene, Å. J., Meyer, M., Nagel, S., Tukhbatova, R. I., Khokhlov, A., Chizhevsky, A., Hansen, S., Belinsky, A. B., Kalmykov, A., Kantorovich, A. R., Maslov, V. E., Stockhammer, P. W., Vai, S., Zavattaro, M., Riga, A., Caramelli, D., Skeates, R., Beckett, J., Gradoli, M. G., Steuri, N., Hafner, A., Ramstein, M., Siebke, I., Lösch, S., Erdal, Y. S., Alikhan, N.-F., Zhou, Z., Achtman, M., Bos, K. I., Reinhold, S., Haak, W., Kühnert, D., Herbig, A., & Krause, J. (2020). Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution, 4, 324-333.
DOI    BibTeX   Endnote   

Khan, N., de Manuel, M., Peyrégne, S., Do, R., Prüfer, K., Marques-Bonet, T., Varki, N., Gagneux, P., & Varki, A. (2020). Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins. Genome Biology and Evolution, 12(7), 1040-1050.
Open Access    DOI    BibTeX   Endnote   

Khrameeva, E., Kurochkin, I., Han, D., Guijarro, P., Kanton, S., Santel, M., Qian, Z., Rong, S., Mazin, P., Sabirov, M., Bulat, M., Efimova, O., Tkachev, A., Guo, S., Sherwood, C. C., Camp, J. G., Pääbo, S., Treutlein, B., & Khaitovich, P. (2020). Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains. Genome Research, 30(5), 776-789.
Open Access    DOI    BibTeX   Endnote   

Kutanan, W., Shoocongdej, R., Srikummool, M., Hübner, A., Suttipai, T., Srithawong, S., Kampuansai, J., & Stoneking, M. (2020). Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand. European Journal of Human Genetics, 28, 1563-1579.
Open Access    DOI    BibTeX   Endnote   

Lang, P. L. M., Weiß, C. L., Kersten, S., Latorre, S. M., Nagel, S., Nickel, B., Meyer, M., & Burbano, H. A. (2020). Hybridization ddRAD-sequencing for population genomics of nonmodel plants using highly degraded historical specimen DNA. Molecular Ecology Resources, 20(5), 1228-1247.
Open Access    DOI    BibTeX   Endnote   

Liu, D., Duong, N. T., Ton, N. D., Van Phong, N., Pakendorf, B., Van Hai, N., & Stoneking, M. (2020). Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity. Molecular Biology and Evolution, 37(9): msaa099, pp. 2503-2519.
Open Access    DOI    BibTeX   Endnote   

Mafessoni, F., Grote, S., de Filippo, C., Slon, V., Kolobova, K. A., Viola, B., Markin, S. V., Chintalapati, M., Peyrégne, S., Skov, L., Skoglund, P., Krivoshapkin, A. I., Derevianko, A. P., Meyer, M., Kelso, J., Peter, B., Prüfer, K., & Pääbo, S. (2020). A high-coverage Neandertal genome from Chagyrskaya Cave. Proceedings of the National Academy of Sciences, 117(26), 15132-15136.
Open Access    DOI    BibTeX   Endnote   

Maricic, T., Nickel, O., Ayinuer-Petri, A., Essel, E., Gansauge, M.-T., Kanis, P., Macak, D., Riesenberg, S., Bokelmann, L., Zeberg, H., Meyer, M., Borte, S., & Pääbo, S. (2020). A direct RT-qPCR approach to test large numbers of individuals for SARS-CoV-2. PLoS One, 15(12): e0244824.
Open Access    DOI    BibTeX   Endnote   

Massilani, D., Skov, L., Hajdinjak, M., Gunchinsuren, B., Tseveendorj, D., Yi, S., Lee, J., Nagel, S., Nickel, B., Devièse, T., Higham, T., Meyer, M., Kelso, J., Peter, B., & Pääbo, S. (2020). Denisovan ancestry and population history of early East Asians. Science, 370(6516), 579-583.
DOI    BibTeX   Endnote   

Miller, A. J., Yu, Q., Czerwinski, M., Tsai, Y.-H., Conway, R. F., Wu, A., Holloway, E. M., Walker, T., Glass, I. A., Treutlein, B., Camp, J. G., & Spence, J. R. (2020). In vitro and in vivo development of the human airway at single-cell resolution. Developmental Cell, 53(1): e6, pp. 117-128.
DOI    BibTeX   Endnote   

Mitina, A., Mazin, P., Vanyushkina, A., Anikanov, N., Mair, W., Guo, S., & Khaitovich, P. (2020). Lipidome analysis of milk composition in humans, monkeys, bovids, and pigs. BMC Evolutionary Biology, 20(70).
Open Access    DOI    BibTeX   Endnote   

Ou, M.-Y., Ju, X.-C., Cai, Y.-J., Sun, X.-Y., Wang, J.-F., Fu, X.-Q., Sun, Q., & Luo, Z.-G. (2020). Heterogeneous nuclear ribonucleoprotein A3 controls mitotic progression of neural progenitors via interaction with cohesin. Development, 147: dev185132.
DOI    BibTeX   Endnote   

Parker, E. C., Rohrlach, A. B., Friederich, S., Nagel, S., Meyer, M., Krause, J., Bos, K. I., & Haak, W. (2020). A systematic investigation of human DNA preservation in medieval skeletons. Scientific Reports, 10(1): 18225.
Open Access    DOI    BibTeX   Endnote   

Pedro, N., Brucato, N., Fernandes, V., André, M., Saag, L., Pomat, W., Besse, C., Boland, A., Deleuze, J.-F., Clarkson, C., Sudoyo, H., Metspalu, M., Stoneking, M., Cox, M. P., Leavesley, M., Pereira, L., & Ricaut, F.-X. (2020). Papuan mitochondrial genomes and the settlement of Sahul. Journal of Human Genetics, 65(875), 887.
Open Access    DOI    BibTeX   Endnote   

Peter, B. M., Petkova, D., & Novembre, J. (2020). Genetic landscapes reveal how human genetic diversity aligns with geography. Molecular Biology and Evolution, 37(4), 943-951.
Open Access    DOI    BibTeX   Endnote   

Petr, M., Hajdinjak, M., Fu, Q., Essel, E., Rougier, H., Crevecoeur, I., Semal, P., Golovanova, L. V., Doronichev, V. B., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Shunkov, M. V., Kozlikin, M. B., Derevianko, A. P., Vernot, B., Meyer, M., & Kelso, J. (2020). The evolutionary history of Neanderthal and Denisovan Y chromosomes. Science, 369(6511), 1653-1656.
DOI    BibTeX   Endnote   

Peyrégne, S. (2020). Tracing the ancestral roots of Neandertals. The Science Breaker, 6(1).
Open Access    DOI    BibTeX   Endnote   

Peyrégne, S., & Peter, B. M. (2020). AuthentiCT: A model of ancient DNA damage to estimate the proportion of present-day DNA contamination. Genome Biology, 21: 246.
Open Access    DOI    BibTeX   Endnote   

Peyrégne, S., & Prüfer, K. (2020). Present-Day DNA contamination in ancient DNA datasets. BioEssays, 42: 2000081.
Open Access    DOI    BibTeX   Endnote   

Picin, A., Hajdinjak, M., Nowaczewska, W., Benazzi, S., Urbanowski, M., Marciszak, A., Fewlass, H., Socha, P., Stefaniak, K., Żarski, M., Wiśniewski, A., Hublin, J.-J., Nadachowski, A., & Talamo, S. (2020). New perspectives on Neanderthal dispersal and turnover from Stajnia Cave (Poland). Scientific Reports, 10: 14778.
Open Access    DOI    BibTeX   Endnote   

Romandini, M., Gregorio, O., Bortolini, E., Peyrégne, S., Delpiano, D., Nava, A., Panetta, D., Domenico, G. D., Martini, P., Arrighi, S., Badino, F., Figus, C., Lugli, F., Marciani, G., Silvestrini, S., Sartorio, J. C. M., Terlato, G., Hublin, J.-J., Meyer, M., Bondioli, L., Higham, T., Slon, V., Peresani, M., & Benazzi, S. (2020). A late Neanderthal tooth from northeastern Italy. Journal of Human Evolution, 147: 102867.
DOI    BibTeX   Endnote   

Semo, A., Gayà-Vidal, M., Fortes-Lima, C., Alard, B., Oliveira, S., Almeida, J., Prista, A., Damasceno, A., Fehn, A., Schlebusch, C., & Rocha, J. (2020). Along the Indian Ocean coast: Genomic variation in Mozambique provides new insights into the Bantu expansion. Molecular Biology and Evolution, 37(2), 406-416.
Open Access    DOI    BibTeX   Endnote   

Skov, L., Macià, M. C., Sveinbjörnsson, G., Mafessoni, F., Lucotte, E. A., Einarsdóttir, M. S., Jonsson, H., Halldorsson, B., Gudbjartsson, D. F., Helgason, A., Schierup, M. H., & Stefansso, K. (2020). The nature of Neanderthal introgression revealed by 27,566 Icelandic genomes. Nature, 582, 78-83.
DOI    BibTeX   Endnote   

Telford, M., Hughes, D. A., Juan, D., Stoneking, M., Navarro, A., & Santpere, G. (2020). Expanding the Geographic Characterisation of Epstein–Barr Virus Variation through Gene-Based Approaches. Microorganisms, 8: 1686.
Open Access    DOI    BibTeX   Endnote   

Voiculescu, S. E., Le Duc, D., Rosca, A. E., & Zagrean, A.-M. (2020). The pineal gland development and its physiology in fetus and neonate. In C. S. Kovacs, & C. L. Deal (Eds.), Maternal-Fetal and Neonatal Endocrinology: Physiology, Pathophysiology, and Clinical Management (pp. 547-561). Academic Press.
DOI    BibTeX   Endnote   

Weiß, C. L., Gansauge, M.-T., Aximu-Petri, A., Meyer, M., & Burbano, H. A. (2020). Mining ancient microbiomes using selective enrichment of damaged DNA molecules. BMC Genomics, 21: 432.
Open Access    DOI    BibTeX   Endnote   

Yang, M. A., Fan, X., Sun, B., Chen, C., Lang, J., Ko, Y.-C., Tsang, C.-h., Chiu, H., Wang, T., Bao, Q., Wu, X., Hajdinjak, M., Ko, A.-M.-S., Ding, M., Cao, P., Yang, R., Liu, F., Nickel, B., Dai, Q., Feng, X., Zhang, L., Sun, C., Ning, C., Zeng, W., Zhao, Y., Zhang, M., Gao, X., Cui, Y., Reich, D., Stoneking, M., & Fu, Q. (2020). Ancient DNA indicates human population shifts and admixture in northern and southern China. Science, 369(6501), 282-288.
DOI    BibTeX   Endnote   

Zeberg, H., & Pääbo, S. (2020). The major genetic risk factor for severe COVID-19 is inherited from Neanderthals. Nature, 587(7835), 610-612.
DOI    BibTeX   Endnote   

Zeberg, H., Dannemann, M., Sahlholm, K., Tsuo, K., Maricic, T., Wiebe, V., Hevers, W., Robinson, H. P., Kelso, J., & Pääbo, S. (2020). A Neandertal sodium channel increases pain sensitivity in present-day humans. Current Biology, 30(17), 3465-3469.
Open Access    DOI    BibTeX   Endnote   

Zeberg, H., Kelso, J., & Pääbo, S. (2020). The Neandertal progesterone receptor. Molecular Biology and Evolution, 37(9): msaa119, pp. 2655-2660.
Open Access    DOI    BibTeX   Endnote   

Zhang, D., Xia, H., Chen, F., Li, B., Slon, V., Cheng, T., Yang, R., Jacobs, Z., Dai, Q., Massilani, D., Shen, X., Wang, J., Feng, X., Cao, P., Yang, M. A., Yao, J., Yang, J., Madsen, D. B., Han, Y., Ping, W., Liu, F., Perreault, C., Chen, X., Meyer, M., Kelso, J., Pääbo, S., & Fu, Q. (2020). Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau. Science, 370(6516), 584-587.
DOI    BibTeX   Endnote   

2019

Barbieri, C., Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, 36(12), 2698-2713.
Open Access    DOI    BibTeX   Endnote   

Bokelmann, L., Hajdinjak, M., Peyrégne, S., Brace, S., Essel, E., de Filippo, C., Glocke, I., Grote, S., Mafessoni, F., Nagel, S., Kelso, J., Prüfer, K., Vernot, B., Barnes, I., Pääbo, S., Meyer, M., & Stringer, C. (2019). A genetic analysis of the Gibraltar Neanderthals. Proceedings of the National Academy of Sciences, 116(31), 15610-15615.
DOI    BibTeX   Endnote   

Brazovskaja, A., Treutlein, B., & Camp, J. G. (2019). High-throughput single-cell transcriptomics on organoids. Current Opinion in Biotechnology, 55, 167-171.
DOI    BibTeX   Endnote   

Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C. J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M. P., Sudoyo, H., Stoneking, M., Pereira, L., & Ricaut, F.-X. (2019). Evidence of Austronesian genetic lineages in East Africa and South Arabia: Complex dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution, 11(3), 748-758.
Open Access    DOI    BibTeX   Endnote   

Bücking, R., Cox, M. P., Hudjashov, G., Saag, L., Sudoyo, H., & Stoneking, M. (2019). Archaic mitochondrial DNA inserts in modern day nuclear genomes. BMC Genomics, 20: 1017.
Open Access    DOI    BibTeX   Endnote   

Dabney, J., & Meyer, M. (2019). Extraction of highly degraded DNA from ancient bones and teeth. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 25-29). New York, NY: Springer.
DOI    BibTeX   Endnote   

Dannemann, M. (2019). Der Neandertaler in uns. BIOspektrum, 25(5), 497-499.
Open Access    DOI    BibTeX   Endnote   

Devièse, T., Massilani, D., Yi, S., Comeskey, D., Nagel, S., Nickel, B., Ribechini, E., Lee, J., Tseveendorj, D., Gunchinsuren, B., Meyer, M., Pääbo, S., & Higham, T. (2019). Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia. Nature Communications, 10(10): 274.
Open Access    DOI    BibTeX   Endnote   

Douka, K., Brown, S., Higham, T., Pääbo, S., Derevianko, A., & Shunkov, M. (2019). FINDER project: Collagen fingerprinting (ZooMS) for the identification of new human fossils. Antiquity, 93(367): e1.
DOI    BibTeX   Endnote   

Douka, K., Slon, V., Jacobs, Z., Ramsey, C. B., Shunkov, M. V., Derevianko, A. P., Mafessoni, F., Kozlikin, M. B., Li, B., Grün, R., Comeskey, D., Devièse, T., Brown, S., Viola, B., Kinsley, L., Buckley, M., Meyer, M., Roberts, R. G., Pääbo, S., Kelso, J., & Higham, T. (2019). Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave. Nature, 565(7741), 640-644.
DOI    BibTeX   Endnote   

Drukewitz, S. H., Bokelmann, L., Undheim, E. A. B., & von Reumont, B. M. (2019). Toxins from scratch? Diverse, multimodal gene origins in the predatory robber fly Dasypogon diadema indicate a dynamic venom evolution in dipteran insects. GigaScience, 8(7): giz081.
Open Access    DOI    BibTeX   Endnote   

Drukewitz, S. H., Jauss, R.-T., Bokelmann, L., & von Reumont, B. M. (2019). The complete mitochondrial genome of the hymenopteran hunting robber fly Dasypogon diadema. Mitochondrial DNA Part B, 4(1), 1584-1585.
Open Access    DOI    BibTeX   Endnote   

Evans, B. J., Gansauge, M.-T., Stanley, E. L., Furman, B. L. S., Cauret, C. M. S., Ofori-Boateng, C., Gvoždík, V., Streicher, J. W., Greenbaum, E., Tinsley, R. C., Meyer, M., & Blackburn, D. C. (2019). Xenopus fraseri: Mr. Fraser, where did your frog come from? PLoS One, 14(9): e0220892.
Open Access    DOI    BibTeX   Endnote   

Ezra, D., Hershkovitz, I., Salame, K., Alperovitch-Najenson, D., & Slon, V. (2019). Osteophytes in the Cervical Vertebral Bodies (C3–C7)—Demographical Perspectives. The Anatomical Record, 302(2), 226-231.
DOI    BibTeX   Endnote   

Ezra, D., Slon, V., Kedar, E., Masharawi, Y., Salame, K., Alperovitch-Najenson, D., & Hershkovitz, I. (2019). The torg ratio of C3-C7 in African Americans and European Americans: A skeletal study. Clinical Anatomy, 32(1), 84-89.
DOI    BibTeX   Endnote   

Gansauge, M.-T., & Meyer, M. (2019). A method for single-stranded ancient DNA library preparation. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 75-83). New York, NY: Springer.
DOI    BibTeX   Endnote   

Giner-Delgado, C., Villatoro, S., Lerga-Jaso, J., Gayà-Vidal, M., Oliva, M., Castellano, D., Pantano, L., Bitarello, B. D., Izquierdo, D., Noguera, I., Olalde, I., Delprat, A., Blancher, A., Lalueza-Fox, C., Esko, T., O’Reilly, P. F., Andrés, A. M., Ferretti, L., Puig, M., & Cáceres, M. (2019). Evolutionary and functional impact of common polymorphic inversions in the human genome. Nature Communications, 10(4222).
Open Access    DOI    BibTeX   Endnote   

Gunz, P., Tilot, A. K., Wittfeld, K., Teumer, A., Shapland, C. Y., van Erp, T. G. M., Dannemann, M., Vernot, B., Neubauer, S., Guadalupe, T., Fernández, G., Brunner, H. G., Enard, W., Fallon, J., Hosten, N., Völker, U., Profico, A., Di Vincenzo, F., Manzi, G., Kelso, J., St. Pourcain, B., Hublin, J.-J., Franke, B., Pääbo, S., Macciardi, F., Grabe, H. J., & Fisher, S. E. (2019). Neandertal introgression sheds light on modern human endocranial globularity. Current Biology, 29(1), 120-127.e5.
Open Access    DOI    BibTeX   Endnote   

Han, S., Andrés, A. M., & Marques-Bonet, T. (2019). Genetic variation in Pan species is shaped by demographic history and harbors lineage-specific functions. Genome Biology and Evolution, 11(4), 1178-1191.
Open Access    DOI    BibTeX   Endnote   

Hübner, A., Wachsmuth, M., Schröder, R., Li, M., Eis-Hübinger, A. M., Madea, B., & Stoneking, M. (2019). Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome. Scientific Reports, 9: 11219.
Open Access    DOI    BibTeX   Endnote   

Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, J. S., & Cox, M. P. (2019). Multiple deeply divergent Denisovan ancestries in Papuans. Cell, 117(4), 1010-1021.
DOI    BibTeX   Endnote   

Kanton, S., Boyle, M. J., He, Z., Santel, M., Weigert, A., Sanchís-Calleja, F., Guijarro, P., Sidow, L., Fleck, J. S., Han, D., Qian, Z., Heide, M., Huttner, W. B., Khaitovich, P., Pääbo, S., Treutlein, B., & Camp, J. G. (2019). Organoid single-cell genomic atlas uncovers human-specific features of brain development. Nature, 574(7778), 418-422.
DOI    BibTeX   Endnote   

Klaus, J., Kanton, S., Kyrousi, C., Ayo-Martin, A. C., Giaimo, R. D., Riesenberg, S., O’Neill, A. C., Camp, J. G., Tocco, C., Santel, M., Rusha, E., Drukker, M., Schroeder, M., Götz, M., Robertson, S. P., Treutlein, B., & Cappello, S. (2019). Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. Nature Medicine, 25, 561-568.
DOI    BibTeX   Endnote   

Klein, A. M., & Treutlein, B. (2019). Single cell analyses of development in the modern era. Development, 146(12): dev181396.
DOI    BibTeX   Endnote   

Korlević, P., & Meyer, M. (2019). Pretreatment: Removing DNA contamination from ancient bones and teeth using sodium hypochlorite and phosphate. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 15-19). New York, NY: Springer.
DOI    BibTeX   Endnote   

Kutanan, W., Kampuansai, J., Srikummool, M., Brunelli, A., Ghirotto, S., Arias, L., Macholdt, E., Hübner, A., Schröder, R., & Stoneking, M. (2019). Contrasting paternal and maternal genetic histories of Thai and Lao populations. Molecular Biology and Evolution, 36(7): msz083, pp. 1490-1506.
Open Access    DOI    BibTeX   Endnote   

Laval, G., Peyrégne, S., Zidane, N., Harmant, C., Renaud, F., Patin, E., Prugnolle, F., & Quintana-Murci, L. (2019). Recent adaptive acquisition by African rainforest hunter-gatherers of the late Pleistocene sickle-cell mutation suggests past differences in malaria exposure. The American Journal of Human Genetics, 104(3), 553-561.
DOI    BibTeX   Endnote   

Macholdt, E., Arias, L., Duong, N. T., Ton, N. D., Van Phong, N., Schröder, R., Pakendorf, B., Van Hai, N., & Stoneking, M. (2019). The paternal and maternal genetic history of Vietnamese populations. European Journal of Human Genetics, 28(5), 636-645.
Open Access    DOI    BibTeX   Endnote   

Mafessoni, F. (2019). Encounters with archaic hominins. Nature Ecology and Evolution, 3, 14-15.
DOI    BibTeX   Endnote   

Mafessoni, F., & Lachmann, M. (2019). The complexity of understanding others as the evolutionary origin of empathy and emotional contagion. Scientific Reports, 9: 5794.
Open Access    DOI    BibTeX   Endnote   

Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., Alex, N., Broomandkhoshbacht, N., Candilio, F., Callan, K., Cheronet, O., Culleton, B. J., Ferry, M., Fernandes, D., Freilich, S., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, É., Harper, T. K., Keating, D., Lawson, A. M., Mah, M., Mandl, K., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zalzala, F., Zhang, Z., Akhatov, G., Bagashev, A. N., Bagnera, A., Baitanayev, B., Bendezu-Sarmiento, J., Bissembaev, A. A., Bonora, G. L., Chargynov, T. T., Chikisheva, T., Dashkovskiy, P. K., Derevianko, A., Dobeš, M., Douka, K., Dubova, N., Duisengali, M. N., Enshin, D., Epimakhov, A., Fribus, A. V., Fuller, D., Goryachev, A., Gromov, A., Grushin, S. P., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Krygin, A. P., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Mamedov, A. M., Mamirov, T. B., Meiklejohn, C., Merrett, D. C., Micheli, R., Mochalov, O., Mustafokulov, S., Nayak, A., Pettener, D., Potts, R., Razhev, D., Rykun, M., Sarno, S., Savenkova, T. M., Sikhymbaeva, K., Slepchenko, S. M., Soltobaev, O. A., Stepanova, N., Svyatko, S., Tabaldiev, K., Teschler-Nicola, M., Tishkin, A. A., Tkachev, V. V., Vasilyev, S., Velemínský, P., Voyakin, D., Yermolayeva, A., Zahir, M., Zubkov, V. S., Zubova, A., Shinde, V. S., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D. J., Frachetti, M., Pinhasi, R., & Reich, D. (2019). The formation of human populations in South and Central Asia. Science, 365(6457): eaat7487.
DOI    BibTeX   Endnote   

Nersisyan, L., Nikoghosyan, M., Arakelyan, A., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others (2019). WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene. Scientific Reports, 9: 18758.
Open Access    DOI    BibTeX   Endnote   

Oliveira, S., Hübner, A., Fehn, A.-M., Aço, T., Lages, F., Pakendorf, B., Stoneking, M., & Rocha, J. (2019). The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola. European Journal of Human Genetics, 27, 475-483.
DOI    BibTeX   Endnote   

Pääbo, S. (2019). Lessons from our inner Neanderthal: How extinct hominins live on in people today; the genomes of now-extinct archaic humans can help us understand more about what makes us modern-day humans truly unique. In S. Shuzhen, & B. Seet (Eds.), Sydney Brenner's 10-on-10: the chronicles of evolution (pp. 129-137). Singapore: Wildtype Books.
BibTeX   Endnote   

Parra, R. G., Papadopoulos, N., Ahumada-Arranz, L., El Kholtei, J., Mottelson, N., Horokhovsky, Y., Treutlein, B., & Soeding, J. (2019). Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research, 47(17), 8961-8974.
Open Access    DOI    BibTeX   Endnote   

Petr, M., Pääbo, S., Kelso, J., & Vernot, B. (2019). Limits of long-term selection against Neandertal introgression. Proceedings of the National Academy of Sciences, 116(5), 1639-1644.
Open Access    DOI    BibTeX   Endnote   

Petr, M., Vernot, B., & Kelso, J. (2019). admixr – R package for reproducible analyses using ADMIXTOOLS. Bioinformatics, 35(17): btz030, pp. 3194-3195.
Open Access    DOI    BibTeX   Endnote   

Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., Conard, N. J., Kind, C. J., Posth, C., Krause, J., Abrams, G., Bonjean, D., Di Modica, K., Toussaint, M., Kelso, J., Meyer, M., Pääbo, S., & Prüfer, K. (2019). Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science Advances, 5(6): eaaw5873.
Open Access    DOI    BibTeX   Endnote   

Reher, D., Key, F. M., Andrés, A. M., & Kelso, J. (2019). Immune gene diversity in archaic and present-day humans. Genome Biology and Evolution, 11(1), 232-241.
Open Access    DOI    BibTeX   Endnote   

Riesenberg, S., Chintalapati, M., Macak, D., Kanis, P., Maricic, T., & Pääbo, S. (2019). Simultaneous precise editing of multiple genes in human cells. Nucleic Acids Research, 47(19): e116.
Open Access    DOI    BibTeX   Endnote   

Schmidt, J., de Manuel, M., Marques-Bonet, T., Castellano, S., & Andrés, A. M. (2019). The impact of genetic adaptation on chimpanzee subspecies differentiation. PLOS Genetics, 15(11), 1-32.
Open Access    DOI    BibTeX   Endnote   

Shinde, V., Narasimhan, V. M., Rohland, N., Mallick, S., Mah, M., Lipson, M., Nakatsuka, N., Adamski, N., Broomandkhoshbacht, N., Ferry, M., Lawson, A. M., Michel, M., Oppenheimer, J., Stewardson, K., Jadhav, N., Kim, Y. J., Chatterjee, M., Munshi, A., Panyam, A., Waghmare, P., Yadav, Y., Patel, H., Kaushik, A., Thangaraj, K., Meyer, M., Patterson, N., Rai, N., & Reich, D. (2019). An ancient Harappan genome lacks ancestry from Steppe pastoralists or Iranian farmers. Cell, 179(3), 729-735.e10.
DOI    BibTeX   Endnote   

Shull, G., Haffner, C., Huttner, W. B., Kodandaramaiah, S. B., & Taverna, E. (2019). Robotic platform for microinjection into single cells in brain tissue. EMBO reports, 20(10): e47880.
Open Access    DOI    BibTeX   Endnote   

Shvetsova, E., Sofronova, A., Monajemi, R., Gagalova, K., Draisma, H. H. M., White, S. J., Santen, G. W. E., Chuva de Sousa Lopes, S. M., Heijmans, B. T., van Meurs, J., Jansen, R., Franke, L., Kielbasa, S. M., den Dunnen, J. T., ´t Hoen, P. A. C., BIOS consortium, GoNL consortium, including authors, Li, M., Stoneking, M., & & others (2019). Skewed X-inactivation is common in the general female population. European Journal of Human Genetics, 27, 455-465.
Open Access    DOI    BibTeX   Endnote   

Slon, V., & Pääbo, S. (2019). Rendezvous in der Steinzeit. In Highlights 2018 aus dem Jahrbuch der Max-Planck-Gesellschaft (pp. 32-34). München: Max-Planck-Gesellschaft zur Förderung der Wissenschaften e. V.
BibTeX   Endnote   

Spataru, A., Le Duc, D., Zagrean, L., & Zagrean, A.-M. (2019). Ethanol exposed maturing rat cerebellar granule cells show impaired energy metabolism and increased cell death after oxygen-glucose deprivation. Neural Regeneration Research, 14(3), 485-490.
DOI    BibTeX   Endnote   

Swift, J. A., Bunce, M., Dortch, J., Douglass, K., Faith, J. T., Fellows Yates, J. A., Field, J., Haberle, S. G., Jacob, E., Johnson, C. N., Lindsey, E., Lorenzen, E. D., Louys, J., Miller, G., Mychajliw, A. M., Slon, V., Villavicencio, N. A., Waters, M. R., Welker, F., Wood, R., Petraglia, M. D., Boivin, N., & Roberts, P. (2019). Micro methods for megafauna: novel approaches to late quaternary extinctions and their contributions to faunal conservation in the anthropocene. Bioscience, 69(11): biz105, pp. 877-887.
Open Access    DOI    BibTeX   Endnote   

Taverna, E., & Huttner, W. B. (2019). The Golgi apparatus in polarized neuroepithelial stem cells and their progeny: Canonical and noncanonical features. In M. Kloc (Ed.), The Golgi Apparatus and Centriole: Functions, Interactions and Role in Disease (pp. 359-375). Cham: Springer International Publishing.
DOI    BibTeX   Endnote   

Tkachev, A., Stepanova, V., Zhang, L., Khrameeva, E., Zubkov, D., Giavalisco, P., & Khaitovich, P. (2019). Differences in lipidome and metabolome organization of prefrontal cortex among human populations. Scientific Reports, 9: 18348.
Open Access    DOI    BibTeX   Endnote   

Tyshkovskiy, A., Bozaykut, P., Borodinova, A. A., Gerashchenko, M. V., Ables, G. P., Garratt, M., Khaitovich, P., Clish, C. B., Miller, R. A., & Gladyshev, V. N. (2019). Identification and application of gene expression signatures associated with lifespan extension. Cell Metabolism, 30(3): e8, pp. 573-593.
DOI    BibTeX   Endnote   

Vai, S., Sarno, S., Lari, M., Luiselli, D., Manzi, G., Gallinaro, M., Mataich, S., Hübner, A., Modi, A., Pilli, E., Tafuri, M. A., Caramelli, D., & di Lernia, S. (2019). Ancestral mitochondrial N lineage from the Neolithic ‘green’ Sahara. Scientific Reports, 9(1): 3530.
Open Access    DOI    BibTeX   Endnote   

Wiedenhoeft, J., Cagan, A., Kozhemyakina, R., Gulevich, R., & Schliep, A. (2019). Bayesian localization of CNV candidates in WGS data within minutes. Algorithms for Molecular Biology, 14: 20.
Open Access    DOI    BibTeX   Endnote   

Wren, J. D., Valencia, A., & Kelso, J. (2019). Reviewer-coerced citation: Case report, update on journal policy and suggestions for future prevention. Bioinformatics, 35(18), 3217-3218.
Open Access    DOI    BibTeX   Endnote   

2018

Arias, L., Barbieri, C., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia. American Journal of Physical Anthropology, 165(2), 238-255.
DOI    BibTeX   Endnote   

Arias, L., Schröder, R., Hübner, A., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). Cultural innovations influence patterns of genetic diversity in Northwestern Amazonia. Molecular Biology and Evolution, 35(11), 2719-2735.
Open Access    DOI    BibTeX   Endnote   

Ayabe, H., Anada, T., Kamoya, T., Sato, T., Kimura, M., Yoshizawa, E., Kikuchi, S., Ueno, Y., Sekine, K., Camp, J. G., Treutlein, B., Ferguson, A., Suzuki, O., Takebe, T., & Taniguchi, H. (2018). Optimal hypoxia regulates human iPSC-derived liver bud differentiation through intercellular TGFB signaling. Stem Cell Reports, 11(2), 306-316.
Open Access    DOI    BibTeX   Endnote   

Bajic, V., Barbieri, C., Hübner, A., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Roewer, L., Purps, J., Stoneking, M., & Pakendorf, B. (2018). Genetic structure and sex-biased gene flow in the history of southern African populations. American Journal of Physical Anthropology, 167(3): 23694, pp. 656-671.
Open Access    DOI    BibTeX   Endnote   

Barlow, A., Cahill, J. A., Hartmann, S., Theunert, C., Xenikoudakis, G., Fortes, G. G., Paijmans, J. L. A., Rabeder, G., Frischauf, C., Grandal-d’Anglade, A., García-Vázquez, A., Murtskhvaladze, M., Saarma, U., Anijalg, P., Skrbinšek, T., Bertorelle, G., Gasparian, B., Bar-Oz, G., Pinhasi, R., Slatkin, M., Dalén, L., Shapiro, B., & Hofreiter, M. (2018). Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution, 2, 1563-1570.
DOI    BibTeX   Endnote   

Battlay, P., Leblanc, P. B., Green, L., Garud, N. R., Schmidt, J., Fournier-Level, A., & Robin, C. (2018). Structural variants and selective sweep Foci contribute to insecticide resistance in the Drosophila genetic reference panel. G3: Genes, Genomes, Genetics, 8(11), 3489-3497.
Open Access    DOI    BibTeX   Endnote   

Bitarello, B. D., de Filippo, C., Teixeira, J. C., Schmidt, J. M., Kleinert, P., Meyer, D., & Andrés, A. M. (2018). Signatures of long-term balancing selection in human genomes. Genome Biology and Evolution, 10(3), 939-955.
Open Access    DOI    BibTeX   Endnote   

Brucato, N., Fernandes, V., Mazières, S., Kusuma, P., Cox, M. P., Ng’ang’a, J. W., Omar, M., Simeone-Senelle, M.-C., Frassati, C., Alshamali, F., Fin, B., Boland, A., Deleuze, J.-F., Stoneking, M., Adelaar, A., Crowther, A., Boivin, N., Pereira, L., Bailly, P., Chiaroni, J., & Ricaut, F.-X. (2018). The Comoros show the earliest Austronesian gene flow into the Swahili corridor. The American Journal of Human Genetics, 102(1), 58-68.
DOI    BibTeX   Endnote   

Camp, J. G., Wollny, D., & Treutlein, B. (2018). Single-cell genomics to guide human stem cell and tissue engineering. Nature Methods, 15(9), 661-667.
DOI    BibTeX   Endnote   

Dannemann, M., & Racimo, F. (2018). Something old, something borrowed: Admixture and adaptation in human evolution. Current Opinion in Genetics & Development, 53, 1-8.
DOI    BibTeX   Endnote   

de Filippo, C., Meyer, M., & Prüfer, K. (2018). Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences. BMC Biology, 16: 121.
Open Access    DOI    BibTeX   Endnote   

Duong, N. T., Macholdt, E., Ton, N. D., Arias, L., Schröder, R., Phong, N. V., Thuy, V. T. B., Ha, N. H., Hue, H. T. T., Xuan, N. T., Oanh, K. T. P., Hien, L. T. T., Hoang, N. H., Pakendorf, B., Stoneking, M., & Hai, N. V. (2018). Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. Scientific Reports, 8: 11651.
Open Access    DOI    BibTeX   Endnote   

Fei, J.-F., Lou, W.-P.-K., Knapp, D., Murawala, P., Gerber, T., Taniguchi, Y., Nowoshilow, S., Khattak, S., & Tanaka, E. M. (2018). Application and optimization of CRISPR–Cas9-mediated genome engineering in axolotl ( Ambystoma mexicanum ). Nature Protocols, 13, 2908-2943.
DOI    BibTeX   Endnote   

Gayk, Z. G., Le Duc, D., Horn, J., & Lindsay, A. R. (2018). Genomic insights into natural selection in the common loon (Gavia immer): evidence for aquatic adaptation. BMC Evolutionary Biology, 18: 64.
Open Access    DOI    BibTeX   Endnote   

Gerber, T., Murawala, P., Knapp, D., Masselink, W., Schuez, M., Hermann, S., Gac-Santel, M., Nowoshilow, S., Kageyama, J., Khattak, S., Currie, J. D., Camp, J. G., Tanaka, E. M., & Treutlein, B. (2018). Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. Science, 362(6413): eaaq0681.
DOI    BibTeX   Endnote   

Hajdinjak, M., Fu, Q., Hübner, A., Petr, M., Mafessoni, F., Grote, S., Skoglund, P., Narasimham, V., Rougier, H., Crevecoeur, I., Semal, P., Soressi, M., Talamo, S., Hublin, J.-J., Gušic, I., Kucan, Ž., Rudan, P., Golovanova, L. V., Doronichev, V. B., Posth, C., Krause, J., Korlevic, P., Nagel, S., Nickel, B., Slatkin, M., Patterson, N., Reich, D., Prüfer, K., Meyer, M., Pääbo, S., & Kelso, J. (2018). Reconstructing the genetic history of late Neanderthals. Nature, 555(7698), 652-656.
DOI    BibTeX   Endnote   

He, Z., & Yu, Q. (2018). Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation. BMC Genomics, 19: 262.
Open Access    DOI    BibTeX   Endnote   

Heide, M., Huttner, W. B., & Mora-Bermúdez, F. (2018). Brain organoids as models to study human neocortex development and evolution. Current Opinion in Cell Biology, 55, 8-16.
DOI    BibTeX   Endnote   

Helm, C., Beckers, P., Bartolomaeus, T., Drukewitz, S. H., Kourtesis, I., Weigert, A., Purschke, G., Worsaae, K., Struck, T. H., & Bleidorn, C. (2018). Convergent evolution of the ladder-like ventral nerve cord in Annelida. Frontiers in Zoology, 15: 36.
Open Access    DOI    BibTeX   Endnote   

Henne, K., Schilling, H., Stoneking, M., Conrads, G., & Horz, H.-P. (2018). Sex-specific differences in the occurrence of Fusobacterium nucleatum subspecies and Fusobacterium periodonticum in the oral cavity. Oncotarget, 9(29), 20631-20639.
DOI    BibTeX   Endnote   

Hernandez-Rodriguez, J., Arandjelovic, M., Lester, J. D., de Filippo, C., Weihmann, A., Meyer, M., Angedakin, S., Casals, F., Navarro, A., Vigilant, L., Kühl, H. S., Langergraber, K., Boesch, C., Hughes, D., & Marques-Bonet, T. (2018). The impact of endogenous content, replicates and pooling on genome capture from faecal samples. Molecular Ecology Resources, 18(2), 319-333.
Open Access    DOI    BibTeX   Endnote   

Hershkovitz, I., & Slon, V. (2018). Levantine fossil record. In W. Trevathan (Ed.), The International Encyclopedia of Biological Anthropology (pp. 946-950). Hoboken, New Jersey: Wiley.
DOI    BibTeX   Endnote   

Hu, H., Liu, J.-M., Hu, Z., Jiang, X., Yang, X., Li, J., Zhang, Y., Yu, H., & Khaitovich, P. (2018). Recently evolved tumor suppressor transcript TP73-AS1 functions as sponge of human-specific miR-941. Molecular Biology and Evolution, 35(5), 1063-1077.
Open Access    DOI    BibTeX   Endnote   

Kageyama, J., Wollny, D., Treutlein, B., & Camp, J. G. (2018). ShinyCortex: Exploring single-cell transcriptome data from the developing human cortex. Frontiers in Neuroscience, 12: 315.
Open Access    DOI    BibTeX   Endnote   

Karow, M., Camp, J. G., Falk, S., Gerber, T., Pataskar, A., Gac-Santel, M., Kageyama, J., Brazovskaja, A., Garding, A., Fan, W., Riedemann, T., Casamassa, A., Smiyakin, A., Schichor, C., Goetz, M., Tiwari, V. K., Treutlein, B., & Berninger, B. (2018). Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program. Nature Reviews Neurology, 21, 932-940.
DOI    BibTeX   Endnote   

Key, F. M., Abdul-Aziz, M. A., Mundry, R., Peter, B. M., Sekar, A., D'Amato, M., Dennis, M. Y., Schmidt, J. M., & Andrés, A. M. (2018). Human local adaptation of the TRPM8 cold receptor along a latitudinal cline. PLoS Genetics, 14(5): e1007298.
Open Access    DOI    BibTeX   Endnote   

Khrameeva, E., Kurochkin, I., Bozek, K., Giavalisco, P., & Khaitovich, P. (2018). Lipidome Evolution in Mammalian Tissues. Molecular Biology and Evolution, 35(8), 1947-1957.
DOI    BibTeX   Endnote   

Klotz, B., Kneitz, S., Regensburger, M., Hahn, L., Dannemann, M., Kelso, J., Nickel, B., Lu, Y., Boswell, W., Postlethwait, J., Warren, W., Kunz, M., Walter, R. B., & Schartl, M. (2018). Expression signatures of early-stage and advanced medaka melanomas. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology, 208, 20-28.
DOI    BibTeX   Endnote   

Kolora, S. R. R., Weigert, A., Saffari, A., Kehr, S., Walter Costa, M. B., Spröer, C., Indrischek, H., Chintalapati, M., Lohse, K., Doose, G., Overmann, J., Bunk, B., Bleidorn, C., Grimm-Seyfarth, A., Henle, K., Nowick, K., Faria, R., Stadler, P. F., & Schlegel, M. (2018). Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation. GigaScience, 8(2): giy160.
Open Access    DOI    BibTeX   Endnote   

Korlevic, P., Talamo, S., & Meyer, M. (2018). A combined method for DNA analysis and radiocarbon dating from a single sample. Scientific Reports, 8(1): 4127.
Open Access    DOI    BibTeX   Endnote   

Kunz, M., Löffler-Wirth, H., Dannemann, M., Willscher, E., Doose, G., Kelso, J., Kottek, T., Nickel, B., Hopp, L., Landsberg, J., Hoffmann, S., Tüting, T., Zigrino, P., Mauch, C., Utikal, J., Ziemer, M., Schulze, H.-J., Hölzel, M., Roesch, A., Kneitz, S., Meierjohann, S., Bosserhoff, A., Binder, H., & Schartl, M. (2018). RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas. Oncogene, 37, 6136-6151.
DOI    BibTeX   Endnote   

Kutanan, W., Kampuansai, J., Brunelli, A., Ghirotto, S., Pittayaporn, P., Ruangchai, S., Schröder, R., Macholdt, E., Srikummool, M., Kangwanpong, D., Hübner, A., Arias, L., & Stoneking, M. (2018). New insights from Thailand into the maternal genetic history of Mainland Southeast Asia. European Journal of Human Genetics, 26, 898-911.
Open Access    DOI    BibTeX   Endnote   

Kutanan, W., Kampuansai, J., Changmai, P., Flegontov, P., Schröder, R., Macholdt, E., Hübner, A., Kangwanpong, D., & Stoneking, M. (2018). Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand. Scientific Reports, 8: 1536.
Open Access    DOI    BibTeX   Endnote   

Lamnidis, T. C., Majander, K., Jeong, C., Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., Weihmann, A., Sajantila, A., Kelso, J., Pääbo, S., Onkamo, P., Haak, W., Krause, J., & Schiffels, S. (2018). Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature Communications, 9: 5018.
Open Access    DOI    BibTeX   Endnote   

Loosdrecht, M. v. d., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Ayinuer-Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., Amzazi, S., Hublin, J.-J., Pääbo, S., Schiffels, S., Meyer, M., Haak, W., Jeong, C., & Krause, J. (2018). Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science, 360(6388), 548-552.
DOI    BibTeX   Endnote   

Mafessoni, F., Prasad, R. B., Groop, L., Hansson, O., & Prüfer, K. (2018). Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets. Genome Biology and Evolution, 10(10), 2697-2708.
Open Access    DOI    BibTeX   Endnote   

Mazin, P. V., Jiang, X., Fu, N., Han, D., Guo, M., Gelfand, M. S., & Khaitovich, P. (2018). Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques. RNA, 24(4), 585-596.
DOI    BibTeX   Endnote   

Meyer, D., Aguiar, V. R. C., Bitarello, B. D., Brandt, D. Y. C., & Nunes, K. (2018). A genomic perspective on HLA evolution. Immunogenetics, 70(1), 5-27.
Open Access    DOI    BibTeX   Endnote   

Oliveira, S., Fehn, A.-M., Aço, T., Lages, F., Gayà-Vidal, M., Pakendorf, B., Stoneking, M., & Rocha, J. (2018). Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa. American Journal of Physical Anthropology, 165(3), 518-535.
DOI    BibTeX   Endnote   

Paijmans, J. L. A., Barlow, A., Förster, D. W., Henneberger, K., Meyer, M., Nickel, B., Nagel, D., Havmøller, R. W., Baryshnikov, G. F., Joger, U., Rosendahl, W., & Hofreiter, M. (2018). Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations. BMC Evolutionary Biology, 18: 156.
Open Access    DOI    BibTeX   Endnote   

Pierron, D., Heiske, M., Razafindrazaka, H., Pereda-loth, V., Sanchez, J., Alva, O., Arachiche, A., Boland, A., Olaso, R., Deleuze, J.-F., Ricaut, F.-X., Rakotoarisoa, J.-A., Radimilahy, C., Stoneking, M., & Letellier, T. (2018). Strong selection during the last millennium for African ancestry in the admixed population of Madagascar. Nature Communications, 9: 932.
Open Access    DOI    BibTeX   Endnote   

Prüfer, K. (2018). snpAD: An ancient DNA genotype caller. Bioinformatics, 34(24), 4165-4171.
Open Access    DOI    BibTeX   Endnote   

Pugach, I., Duggan, A. T., Merriwether, D. A., Friedlaender, F. R., Friedlaender, J. S., & Stoneking, M. (2018). The gateway from near into remote Oceania: New insights from genome-wide data. Molecular Biology and Evolution, 35(4), 871-886.
Open Access    DOI    BibTeX   Endnote   

Renaud, G. (2018). glactools: A command-line toolset for the management of genotype likelihoods and allele counts. Bioinformatics, 34(8), 1398-1400.
DOI    BibTeX   Endnote   

Riesenberg, S., & Maricic, T. (2018). Targeting repair pathways with small molecules increases precise genome editing in pluripotent stem cells. Nature Communications, 9: 2164.
Open Access    DOI    BibTeX   Endnote   

Rohland, N., Glocke, I., Ayinuer-Petri, A., & Meyer, M. (2018). Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing. Nature Protocols, 13, 2447-2461.
DOI    BibTeX   Endnote   

Sarangi, G. K., Romagné, F., & Castellano, S. (2018). Distinct patterns of selection in selenium-dependent genes between land and aquatic vertebrates. Molecular Biology and Evolution, 35(7), 1744-1756.
DOI    BibTeX   Endnote   

Slon, V., Mafessoni, F., Vernot, B., de Filippo, C., Grote, S., Viola, T. B., Hajdinjak, M., Peyrégne, S., Nagel, S., Brown, S., Douka, K., Higham, T., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Kelso, J., Meyer, M., Prüfer, K., & Pääbo, S. (2018). The genome of the offspring of a Neanderthal mother and a Denisovan father. Nature, 561(7721), 113-116.
DOI    BibTeX   Endnote   

Stoneking, M. (2018). Mitochondrial DNA. In W. Trevathan (Ed.), The International Encyclopedia of Biological Anthropology (pp. 1020-1023). Hoboken, New Jersey: Wiley.
DOI    BibTeX   Endnote   

Tavano, S., Taverna, E., Kalebic, N., Haffner, C., Namba, T., Dahl, A., Wilsch-Bräuninger, M., Paridaen, J. T. M. L., & Huttner, W. B. (2018). Insm1 Induces Neural Progenitor Delamination in Developing Neocortex via Downregulation of the Adherens Junction Belt-Specific Protein Plekha7. Neuron, 97(6): e8, pp. 1299-1314.
DOI    BibTeX   Endnote   

Tucci, S., Vohr, S. H., McCoy, R. C., Vernot, B., Robinson, M. R., Barbieri, C., Nelson, B. J., Fu, W., Purnomo, G. A., Sudoyo, H., Eichler, E. E., Barbujani, G., Visscher, P. M., Akey, J. M., & Green, R. E. (2018). Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia. Science, 361(6401), 511-516.
DOI    BibTeX   Endnote   

Vaid, S., Camp, J. G., Hersemann, L., Oegema, C. E., Heninger, A.-K., Winkler, S., Brandl, H., Sarov, M., Treutlein, B., Huttner, W. B., & Namba, T. (2018). A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex. Development, 145(20): dev169276.
DOI    BibTeX   Endnote   

Van Laer, B., Kapp, U., Soler-Lopez, M., Moczulska, K., Pääbo, S., Leonard, G., & Mueller-Dieckmann, C. (2018). Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Scientific Reports, 8: 18008.
Open Access    DOI    BibTeX   Endnote   

Vernot, B., & Pääbo, S. (2018). The predecessors within.. (Commentary). Cell, 173(1), 6-7.
DOI    BibTeX   Endnote   

Xiong, J., Jiang, X., Ditsiou, A., Gao, Y., Sun, J., Lowenstein, E. D., Huang, S., & Khaitovich, P. (2018). Predominant patterns of splicing evolution on human, chimpanzee and macaque evolutionary lineages. Human Molecular Genetics, 27(8), 1474-1485.
DOI    BibTeX   Endnote   

Yu, Q., He, Z., Zubkov, D., Huang, S., Kurochkin, I., Yang, X., Halene, T., Willmitzer, L., Giavalisco, P., Akbarian, S., & Khaitovich, P. (2018). Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders. Molecular Psychiatry, 25, 2952-2969.
Open Access    DOI    BibTeX   Endnote