Recent Department Publications
Last update: October 3rd, 2022
2022
Barth, L. A. G., Nebe, M., Kalwa, H., Velluva, A., Kehr, S., Kolbig, F., Prabutzki, P., Kiess, W., Le Duc, D., Garten, A., & Kirstein, A. S. (2022). Phospholipid Scramblase 4 (PLSCR4) Regulates Adipocyte Differentiation via PIP3-Mediated AKT Activation. International Journal of Molecular Sciences, 23(17): 9787. |
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Brown, S., Massilani, D., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Stoessel, A., Jope-Street, B., Meyer, M., Kelso, J., Pääbo, S., Higham, T., & Douka, K. (2022). The earliest Denisovans and their cultural adaptation. Nature Ecology & Evolution, 6, 28-35. |
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Coppo, L., Mishra, P., Siefert, N., Holmgren, A., Pääbo, S., & Zeberg, H. (2022). A substitution in the glutathione reductase lowers electron leakage and inflammation in modern humans. Science Advances, 8(1): eabm1148. |
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COVID-19 Genetics Initiative, including authors, Zeberg, H., & Maricic, T. (2022). A first update on mapping the human genetic architecture of COVID-19. Nature, 608, E1-E10. |
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Cruz, R., Diz-de Almeida, S., López de Heredia, M., Quintela, I., Ceballos, F. C., Pita, G., Lorenzo-Salazar, J. M., González-Montelongo, R., Gago-Domínguez, M., Sevilla Porras, M., Tenorio Castaño, J. A., Nevado, J., Aguado, J. M., Aguilar, C., Aguilera-Albesa, S., Almadana, V., Almoguera, B., Alvarez, N., Andreu-Bernabeu, Á., Arana-Arri, E., Arango, C., Arranz, M. J., Artiga, M.-J., Baptista-Rosas, R. C., Barreda-Sánchez, M., Belhassen-Garcia, M., Bezerra, J. F., Bezerra, M. A. C., Boix-Palop, L., Brion, M., Brugada, R., Bustos, M., Calderón, E. J., Carbonell, C., Castano, L., Castelao, J. E., Conde-Vicente, R., Cordero-Lorenzana, M. L., Cortes-Sanchez, J. L., Corton, M., Darnaude, M. T., De Martino-Rodríguez, A., del Campo-Pérez, V., Diaz de Bustamante, A., Domínguez-Garrido, E., Luchessi, A. D., Eiros, R., Estigarribia Sanabria, G. M., Carmen Fariñas, M., Fernández-Robelo, U., Fernández-Rodríguez, A., Fernández-Villa, T., Gil-Fournier, B., Gómez-Arrue, J., González Álvarez, B., Gonzalez Bernaldo de Quirós, F., González-Peñas, J., Gutiérrez-Bautista, J. F., Herrero, M. J., Herrero-Gonzalez, A., Jimenez-Sousa, M. A., Lattig, M. C., Liger Borja, A., Lopez-Rodriguez, R., Mancebo, E., Martín-López, C., Martín, V., Martinez-Nieto, O., Martinez-Lopez, I., Martinez-Resendez, M. F., Martinez-Perez, A., Mazzeu, J. F., Merayo Macías, E., Minguez, P., Moreno Cuerda, V., Silbiger, V. N., Oliveira, S. F., Ortega-Paino, E., Parellada, M., Paz-Artal, E., Santos, N. P. C., Pérez-Matute, P., Perez, P., Pérez-Tomás, M. E., Perucho, T., Pinsach-Abuin, M. L., Pompa-Mera, E. N., Porras-Hurtado, G. L., Pujol, A., Ramiro León, S., Resino, S., Fernandes, M. R., Rodríguez-Ruiz, E., Rodriguez-Artalejo, F., Rodriguez-Garcia, J. A., Ruiz Cabello, F., Ruiz-Hornillos, J., Ryan, P., Soria, J. M., Souto, J. C., Tamayo, E., Tamayo-Velasco, A., Taracido-Fernandez, J. C., Teper, A., Torres-Tobar, L., Urioste, M., Valencia-Ramos, J., Yáñez, Z., Zarate, R., Nakanishi, T., Pigazzini, S., Degenhardt, F., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Palom, A., Ellinghaus, D., Martínez-Bueno, M., Rolker, S., Amitrano, S., Roade, L., Fava, F., Spinner, C. D., Prati, D., Bernardo, D., Garcia, F., Darcis, G., Fernández-Cadenas, I., Holter, J. C., Banales, J. M., Frithiof, R., Duga, S., Asselta, R., Pereira, A. C., Romero-Gómez, M., Nafría-Jiménez, B., Hov, J. R., Migeotte, I., Renieri, A., Planas, A. M., Ludwig, K. U., Buti, M., Rahmouni, S., Alarcón-Riquelme, M. E., Schulte, E. C., Franke, A., Karlsen, T. H., Valenti, L., Zeberg, H., Richards, B., Ganna, A., Boada, M., de Rojas, I., Ruiz, A., Sánchez-Juan, P., Real, L. M., SCOURGE Cohort Group, HOSTAGE Cohort Group, GRA@CE Cohort Group, Guillen-Navarro, E., Ayuso, C., González-Neira, A., Riancho, J. A., Rojas-Martinez, A., Flores, C., Lapunzina, P., & Carracedo, A. (2022). Novel genes and sex differences in COVID-19 severity (advance online). Human Molecular Genetics. |
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Fast, L., Ågren, R., & Zeberg, H. (2022). Fluorescence-based measurements of membrane-bound angiotensin converting enzyme 2 activity using Xenopus Laevis Oocytes. Biosensors, 12(8): 601. |
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Gerber, T., Loureiro, C., Schramma, N., Chen, S., Jain, A., Weber, A., Weigert, A., Santel, M., Alim, K., Treutlein, B., & Camp, J. G. (2022). Spatial transcriptomic and single-nucleus analysis reveals heterogeneity in a gigantic single-celled syncytium. eLife, 11: e69745. |
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Haeggström, S., Ingelman-Sundberg, M., Pääbo, S., & Zeberg, H. (2022). The clinically relevant CYP2C8*3 and CYP2C9*2 haplotype is inherited from Neandertals. The Pharmacogenomics Journal, 22, 247-249. |
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He, Z., Maynard, A., Jain, A., Gerber, T., Petri, R., Lin, H.-C., Santel, M., Ly, K., Dupré, J.-S., Sidow, L., Sanchis Calleja, F., Jansen, S. M. J., Riesenberg, S., Camp, J. G., & Treutlein, B. (2022). Lineage recording in human cerebral organoids. Nature Methods, 19(1), 90-99.
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Hopkins, R. J. A., Hajdinjak, M., Šefčáková, A., Comeskey, D., Devièse, T., & Higham, T. F. G. (2022). Single amino acid radiocarbon dating of two Neanderthals found at Šal’a (Slovakia). Radiocarbon, 64, 87-100. |
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Huffman , J. E., Butler-Laporte , G., Khan , A., Pairo-Castineira, E., Drivas, T. G., Peloso, G. M., Nakanishi , T., COVID-19 Host Genetics Initiative, Ganna, A., Verma, A., Baillie , J. K., Kiryluk, K., Richards , J. B., & Zeberg, H. (2022). Multi-ancestry fine mapping implicates OAS1 splicing in risk of severe COVID-19. Nature Genetics, 54, 125-127. |
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Jagoda, E., Xue, J. R., Reilly, S. K., Dannemann, M., Racimo, F., Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. C., & Capellini, T. D. (2022). Detection of Neanderthal adaptively introgressed genetic variants that modulate reporter gene expression in human immune cells. Molecular Biology and Evolution, 39(1): msab304. |
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Kilpatrick, A. M., Rahman, F., Anjum, A., Shome, S., Andalib, K. M. S., Banik, S., Chowdhury, S. F., Coombe, P., Astroz, Y. C., Douglas, J. M., Eranti, P., Kiran, A. D., Kumar, S., Lim, H., Lorenzi, V., Lubiana, T., Mahmud, S., Puche, R., Rybarczyk, A., Sium, A., Muktadir, S., Twesigomwe, D., Zok, T., Orengo, C. A., Friedberg, I., Kelso, J., & Welch, L. (2022). Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia. Bioinformatics, 38(Supplement_1), i19-i27. |
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Körner, M. B., Velluva, A., Bundalian, L., Radtke, M., Lin, C.-C., Zacher, P., Bartolomaeus, T., Kirstein, A. S., Mrestani, A., Scholz, N., Platzer, K., Teichmann, A.-C., Hentschel, J., Langenhan, T., Lemke, J. R., Garten, A., Abou Jamra, R., & Le Duc, D. (2022). Altered gene expression profiles impair the nervous system development in individuals with 15q13.3 microdeletion. Scientific Reports, 12(1): 13507. |
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Krumm, J., Sekine, K., Samaras, P., Brazovskaja, A., Breunig, M., Yasui, R., Kleger, A., Taniguchi, H., Wilhelm, M., Treutlein, B., Camp, J. G., & Kuster, B. (2022). High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. Cell Reports, 38: 110604. |
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Le Duc, D., Velluva, A., Cassatt-Johnstone, M., Olsen, R.-A., Baleka, S., Lin, C.-C., Lemke, J. R., Southon, J. R., Burdin, A., Wang, M.-S., Grunewald, S., Rosendahl, W., Joger, U., Rutschmann, S., Hildebrandt, T. B., Fritsch, G., Estes, J. A., Kelso, J., Dalén, L., Hofreiter, M., Shapiro, B., & Schöneberg, T. (2022). Genomic basis for skin phenotype and cold adaptation in the extinct Steller’s sea cow. Science Advances, 8(5). |
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Liu, D., Peter, B. M., Schiefenhövel, W., Kayser, M., & Stoneking, M. (2022). Assessing human genome-wide variation in the Massim region of Papua New Guinea and implications for the Kula trading tradition. Molecular Biology and Evolution, 39(8): msac165. |
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Liu, Q., Iqbal, M. F., Yaqub, T., Firyal, S., Zhao, Y., Stoneking, M., & Li, M. (2022). The transmission of human mitochondrial DNA in four-generation pedigrees (advance online). Human Mutation. |
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Massilani, D., Morley, M. W., Mentzer, S. M., Aldeias, V., Vernot, B., Miller, C., Stahlschmidt, M., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Conard, N. J., Wurz, S., Henshilwood, C. S., Vasquez, J., Essel, E., Nagel, S., Richter, J., Nickel, B., Roberts, R. G., Pääbo, S., Slon, V., Goldberg, P., & Meyer, M. (2022). Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments. Proceedings of the National Academy of Sciences, 119(1): e2113666118. |
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Mora-Bermúdez, F., Kanis, P., Macak, D., Peters, J., Naumann, R., Xing, L., Sarov, M., Winkler, S., Oegema, C. E., Haffner, C., Wimberger, P., Riesenberg, S., Maricic, T., Huttner, W. B., & Pääbo, S. (2022). Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development. Science Advances, 8: eabn7702. |
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Nebe, M., Kehr, S., Schmitz, S., Breitfeld, J., Lorenz, J., Le Duc, D., Stadler, P. F., Meiler, J., Kiess, W., Garten, A., & Kirstein, A. S. (2022). Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells. Biochemical and Biophysical Research Communications, 604, 57-62. |
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Oliveira, S., Nägele, K., Carlhoff, S., Pugach, I., Koesbardiati, T., Hübner, A., Meyer, M., Oktaviana, A. A., Takenaka, M., Katagiri, C., Murti, D. B., Putri, R. S., Mahirta, Petchey, F., Higham, T., Higham, C., O’Connor, S., Hawkins, S., Kinaston, R., Bellwood, P., Ono, R., Powell, A., Krause, J., Posth, C., & Stoneking, M. (2022). Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nature Ecology & Evolution, 6, 1024-1034. |
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Oskolkov, N., Santel, M., Parikh, H. M., Ekström, O., Camp, J. G., Miyamoto-Mikami, E., Ström, K., Mir, B. A., Kryvokhyzha, D., Lehtovirta, M., Kobayashi, H., Kakigi, R., Naito, H., Eriksson, K.-F., Nystedt, B., Fuku, N., Treutlein, B., Pääbo, S., & Hansson, O. (2022). High-throughput muscle fiber typing from RNA sequencing data. Skeletal Muscle, 12: 16. |
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Oxilia, G., Bortolini, E., Marciani, G., Menghi Sartorio, J. C., Vazzana, A., Bettuzzi, M., Panetta, D., Arrighi, S., Badino, F., Figus, C., Lugli, F., Romandini, M., Silvestrini, S., Sorrentino, R., Moroni, A., Donadio, C., Morigi, M. P., Slon, V., Piperno, M., Talamo, S., Collina, C., & Benazzi, S. (2022). Direct evidence that late Neanderthal occupation precedes a technological shift in southwestern Italy (advance online). American Journal of Biological Anthropology. |
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Peter, B. M. (2022). A geometric relationship of F2, F3 and F4-statistics with principal component analysis. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1852): 20200413. |
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Peyrégne, S., Kelso, J., Peter, B. M., & Pääbo, S. (2022). The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals. eLife, 11: e75464. |
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Picin, A., Hajdinjak, M., Nowaczewska, W., Benazzi, S., Urbanowski, M., Marciszak, A., Fewlass, H., Bosch, M. D., Socha, P., Stefaniak, K., Żarski, M., Wiśniewski, A., Hublin, J.-J., Nadachowski, A., & Talamo, S. (2022). Author Correction: New perspectives on Neanderthal dispersal and turnover from Stajnia Cave (Poland). Scientific Reports, 12(1): 4060. |
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Pietzner, M., Chua, R. L., Wheeler, E., Jechow, K., Willett, J. D. S., Radbruch, H., Trump, S., Heidecker, B., Zeberg, H., Heppner, F. L., Eils, R., Mall, M. A., Richards, J. B., Sander, L.-E., Lehmann, I., Lukassen, S., Wareham, N. J., Conrad, C., & Langenberg, C. (2022). ELF5 is a potential respiratory epithelial cell-specific risk gene for severe COVID-19. Nature Communications, 13: 4484. |
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Pinson, A., Xing, L., Namba, T., Kalebic, N., Peters, J., Oegema, C. E., Traikov, S., Reppe, K., Riesenberg, S., Maricic, T., Derihaci, R., Wimberger, P., Pääbo, S., & Huttner, W. B. (2022). Human TKTL1 implies greater neurogenesis in frontal neocortex of modern humans than Neanderthals. Science, 377(6611): eabl6422. |
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Riesenberg, S., Helmbrecht, N., Kanis, P., Maricic, T., & Pääbo, S. (2022). Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage. Nature Communications, 13: 489. |
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Rocha, J. L., Vaz Pinto, P., Siegismund, H. R., Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N., & Godinho, R. (2022). African climate and geomorphology drive evolution and ghost introgression in sable antelope (advance online). Molecular Ecology. |
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Silén, C., Karlgren, K., Hjelmqvist, H., Meister, B., Zeberg, H., & Pettersson, A. (2022). Three-dimensional visualisation of authentic cases in anatomy learning – An educational design study. BMC Medical Education, 22(477). |
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Slon, V., Clark, J. L., Friesem, D. E., Orbach, M., Porat, N., Meyer, M., Kandel, A. W., & Shimelmitz, R. (2022). Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israel. Scientific Reports, 12: 14528. |
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Sotiropoulos, A. G., Arango-Isaza, E., Ban, T., Barbieri, C., Bourras, S., Cowger, C., Czembor, P. C., Ben-David, R., Dinoor, A., Ellwood, S. R., Graf, J., Hatta, K., Helguera, M., Sánchez-Martín, J., McDonald, B. A., Morgounov, A. I., Müller, M. C., Shamanin, V., Shimizu, K. K., Yoshihira, T., Zbinden, H., Keller, B., & Wicker, T. (2022). Global genomic analyses of wheat powdery mildew reveal association of pathogen spread with historical human migration and trade. Nature Communications, 13.
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Wollny, D., Vernot, B., Wang, J., Hondele, M., Safrastyan, A., Aron, F., Micheel, J., He, Z., Hyman, A., Weis, K., Camp, J. G., Tang, T. D., & Treutlein, B. (2022). Characterization of RNA content in individual phase-separated coacervate microdroplets. Nature Communications, 13: 2626.
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Zavala, E. I., Ayinuer-Petri, A., Richter, J., Nickel, B., Vernot, B., & Meyer, M. (2022). Quantifying and reducing cross‐contamination in single‐ and multiplex hybridization capture of ancient DNA. Molecular Ecology Resources, 22(6), 2196-2207. |
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Zavala, E. I., Thomas, J. T., Sturk-Andreaggi, K., Daniels-Higginbotham, J., Meyers, K. K., Barrit-Ross, S., Ayinuer-Petri, A., Richter, J., Nickel, B., Berg, G. E., McMahon, T. P., Meyer, M., & Marshall, C. (2022). Ancient DNA methods improve forensic DNA profiling of Korean War and World War II unknowns. Genes, 13(129). |
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Zeberg, H. (2022). The major genetic risk factor for severe COVID-19 is associated with protection against HIV. Proceedings of the National Academy of Sciences of the United States of America, 119(9): e2116435119. |
Open Access2021
Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46. |
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Berger, C., Heyne, H. O., Heiland, T., Dommel, S., Höfling, C., Guiu-Jurado, E., Lorenz, J., Roßner, S., Dannemann, M., Kelso, J., Kovacs, P., Blüher, M., & Klöting, N. (2021). A novel compound heterozygous leptin receptor mutation causes more severe obesity than in Lepr mice. Journal of Lipid Research, 62: 100105. |
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Bokelmann, L., Nickel, O., Maricic, T., Pääbo, S., Meyer, M., Borte, S., & Riesenberg, S. (2021). Point-of-care bulk testing for SARS-CoV-2 by combining hybridization capture with improved colorimetric LAMP. Nature Communications, 12(1): 1467. |
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Carlhoff, S., Duli, A., Nägele, K., Nur, M., Skov, L., Sumantri, I., Oktaviana, A. A., Hakim, B., Burhan, B., Syahdar, F. A., McGahan, D. P., Bulbeck, D., Perston, Y. L., Newman, K., Saiful, A. M., Ririmasse, M., Chia, S., Hasanuddin, Pulubuhu, D. A. T., Suryatman, Supriadi, Jeong, C., Peter, B. M., Prüfer, K., Powell, A., Krause, J., Posth, C., & Brumm, A. (2021). Genome of a middle Holocene hunter-gatherer from Wallacea. Nature, 596, 543-547. |
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Choin, J., Mendoza-Revilla, J., Arauna, L. R., Cuadros-Espinoza, S., Cassar, O., Larena, M., Ko, A.-M.-S., Harmant, C., Laurent, R., Verdu, P., Laval, G., Boland, A., Olaso, R., Deleuze, J.-F., Valentin, F., Ko, Y.-C., Jakobsson, M., Gessain, A., Excoffier, L., Stoneking, M., Patin, E., & Quintana-Murci, L. (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), 583-589. |
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COVID-19 Host Genetics initiative, including authors, Zeberg, H., Niemi, M. E. K., Karjalainen, J., Liao, R. G., Neale, B. M., Daly, M., Ganna, A., Pathak, G. A., Andrews, S. J., Kanai, M., Veerapen, K., Fernandez-Cadenas, I., Schulte, E. C., Striano, P., Marttila, M., Minica, C., Marouli, E., Karim, M. A., Wendt, F. R., Savage, J., Sloofman, L., Butler-Laporte, G., Kim, H.-N., Kanoni, S., Okada, Y., Byun, J., Han, Y., Uddin, M. J., Smith, G. D., Willer, C. J., Buxbaum, J. D., Mehtonen, J., Finucane, H., Cordioli, M., Martin, A. R., Zhou, W., Pasaniuc, B., Julienne, H., Aschard, H., Shi, H., Yengo, L., Polimanti, R., Ghoussaini, M., Schwartzentruber, J., Dunham, I., Chwialkowska, K., Francescatto, M., Trankiem, A., Balaconis, M. K., Davis, L., Lee, S., Priest, J., Renieri, A., Sankaran, V. G., van Heel, D., Deelen, P., Richards, J. B., Nakanishi, T., Biesecker, L., Kerchberger, V. E., Baillie, J. K., Mari, F., Bernasconi, A., Baillie, S. C., Canakoglu, A., Wolford, B., Faucon, A., Dutta, A. K., Schurmann, C., Harry, E., Birney, E., Nguyen, H., Nasir, J., Kaunisto, M., Solomonson, M., Dueker, N., Vadgama, N., Limou, S., Rahmouni, S., Mbarek, H., Darwish, D., Uddin, M. M., Albertos, R., Pérez-Tur, J., Li, R., Folkersen, L., Moltke, I., Koelling, N., Teumer, A., Kousathanas, A., Utrilla, A., Verdugo, R. A., Zárate, R., Medina-Gómez, C., Gómez-Cabrero, D., Carnero-Montoro, E., Cadilla, C. L., Moreno-Estrada, A., Garmendia, A., Moya, L., Sedaghati-Khayat, B., Boua, P. R., Favé, M.-J., Francioli, L., Lemaçon, A., Migeotte, I., Patel, S., Varnai, R., Szentpeteri, J. L., Sipeky, C., Colombo, F., von Hohenstaufen, K., Lio, P., Vallerga, C., Wang, Q., Tanigawa, Y., Im, H., Han, C., Song, H., Lim, J., Lee, Y., Kim, S., Im, S., Atanasovska, B., Ahmad, H. F., Boer, C., Jansen, P., Franke, L., Kaja, E., Pasko, D., Kennis-Szilagyi, I., Kornilov, S. A., Prijatelj, V., Prokić, I., Sivanadhan, I., Perumal, S., Esmaeeli, S., Pearson, N. M., Auton, A., Shelton, J. F., Shastri, A. J., Filshtein-Sonmez, T., Coker, D., Symons, A., Esparza-Gordillo, J., Aslibekyan, S., O’Connell, J., Ye, C., Weldon, C. H., Perera, M., O’Leary, K., Tuck, M., O’Brien, T., Meltzer, D., O’Donnell, P., Nutescu, E., Yang, G., Alarcon, C., Herrmann, S., Mazurek, S., Banagan, J., Hamidi, Z., Barbour, A., Raffat, N., Moreno, D., Friedman, P., Ferwerda, B., van de Beek, D., Brouwer, M. C., Vlaar, A. P. J., Wiersinga, W. J., Posthuma, D., Tissink, E., Zwinderman, K. H. A., Uffelmann, E., van Agtmael, M., Algera, A. G., van Baarle, F., Bax, D., Beudel, M., Jan Bogaard, H., Bomers, M., Bonta, P. I., Bos, L., Botta, M., de Brabander, J., de Bree, G., de Bruin, S., Bugiani, M., Bulle, E., Chouchane, O., Cloherty, A., Dongelmans, D., Elbers, P., Fleuren, L., Geerlings, S., Geerts, B., Geijtenbeek, T., Girbes, A., Goorhuis, B., Grobusch, M. P., Hafkamp, F., Hagens, L., Hamann, J., Harris, V., Hemke, R., Hermans, S. M., Heunks, L., Hollmann, M., Horn, J., Hovius, J. W., de Jong, D. M., Koning, R., van Mourik, N., Nellen, J., Nossent, E. J., Paulus, F., Peters, E., van der Poll, T., Preckel, B., Prins, J. M., Raasveld, J., Reijnders, T., Schinkel, M., Schultz, M. J., Schuurman, A., Sigaloff, K., Smit, M., Stijnis, C. S., Stilma, W., Teunissen, C., Thoral, P., Tsonas, A., van der Valk, M., Veelo, D., de Vries, H., van Vugt, M., Wouters, D., Minnaar, R. P., Kromhout, A., van Uffelen, J. K. W., Wolterman, R. A., Roberts, G., Park, D., Ball, C. A., Coignet, M., McCurdy, S., Knight, S., Partha, R., & Rhead, B. (2021). Mapping the human genetic architecture of COVID-19. Nature, 600(7889), 472-477. |
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2020
Balzeau, A., Turq, A., Talamo, S., Daujeard, C., Guérin, G., Welker, F., Crevecoeur, I., Fewlass, H., Hublin, J.-J., Lahaye, C., Maureille, B., Meyer, M., Schwab, C., & Gómez-Olivencia, A. (2020). Pluridisciplinary evidence for burial for the La Ferrassie 8 Neandertal child. Scientific Reports, 10: 21230. |
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Bokelmann, L., Glocke, I., & Meyer, M. (2020). Reconstructing double-stranded DNA fragments on a single-molecule level reveals patterns of degradation in ancient samples. Genome Research, 30(10), 1449-1457. |
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Braadbaart, F., Reidsma, F., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, K., Kaal, J., van Os, B., & Marquer, L. (2020). Heating histories and taphonomy of ancient fireplaces: A multi-proxy case study from the Upper Palaeolithic sequence of Abri Pataud (Les Eyzies-de-Tayac, France). Journal of Archaeological Science: Reports, 33: 102468. |
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Cauret, C. M. S., Gansauge, M.-T., Tupper, A. S., Furman, B. L. S., Knytl, M., Song, X., Greenbaum, E., Meyer, M., & Evans, B. J. (2020). Developmental systems drift and the drivers of sex chromosome evolution. Molecular Biology and Evolution, 37(3), 799-808. |
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Dannemann, M., He, Z., Heide, C., Vernot, B., Sidow, L., Kanton, S., Weigert, A., Treutlein, B., Pääbo, S., Kelso, J., & Camp, J. G. (2020). Human stem cell resources are an inroad to Neandertal DNA functions. Stem Cell Reports, 15, 214-225. |
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Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2020). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31. |
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Gansauge, M.-T., Aximu-Petri, A., Nagel, S., & Meyer, M. (2020). Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA. Nature Protocols, 15, 2279-2300. |
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Gunnarsdottir, E. D., & Stoneking, M. (2020). Genetic Landscape of Present-Day Hunter-Gatherer Groups. In T. Güldemann ( |
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2018
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2017
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Savage, P. E., Matsumae, H., Oota, H., Stoneking, M., Currie, T. E., Tajima, A., Gillan, M., & Brown, S. (2015). How 'circumpolar' is Ainu music? Musical and genetic perspectives on the history of the Japanese archipelago. Ethnomusicology Forum, 24(3), 443-467. |
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Sawyer, S., Renaud, G., Viola, B., Hublin, J.-J., Gansauge, M.-T., Shunkov, M. V., Derevianko, A. P., Prüfer, K., Kelso, J., & Pääbo, S. (2015). Nuclear and mitochondrial DNA sequences from two Denisovan individuals. Proceedings of the National Academy of Sciences of the United States of America, 112(51), 15696-15700. |
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Strehlow, V., Heyne, H. O., & Lemke, J. R. (2015). The spectrum of GRIN2A-associated disorders. Epileptologie, 32(3), 147-151. |
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Struck, T. H., Golombek, A., Weigert, A., Franke, F. A., Westheide, W., Purschke, G., Bleidorn, C., & Halanych, K. M. (2015). The evolution of annelids reveals two adaptive routes to the interstitial realm. Current Biology, 25(15), 1993-1999. |
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Teixeira, J. C., de Filippo, C., Weihmann, A., Meneu, J. R., Racimo, F., Dannemann, M., Nickel, B., Fischer, A., Halbwax, M., Andre, C., Atencia, R., Meyer, M., Parra, G., Pääbo, S., & Andrés, A. M. (2015). Long-term balancing selection in LAD1 maintains a missense trans-species polymorphism in humans, chimpanzees and bonobos. Molecular Biology and Evolution, 32(5), 1186-1196. |
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Valverde, G., Zhou, H., Lippold, S., de Filippo, C., Tang, K., Herráez, D. L., Li, J., & Stoneking, M. (2015). A novel candidate region for genetic adaptation to high altitude in Andean populations. PLoS One, 10(5): e0125444. |
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van Leeuwen, E. M., Kanterakis, A., Deelen, P., Kattenberg, M. V., The Genome the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Slagboom, P. E., de Bakker, P. I., Wijmenga, C., Swertz, M. A., Boomsma, D. I., van Duijn, C. M., Karrsen, L. C., & Hottenga, J. J. (2015). Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols, 10(9), 1285-1296. |
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van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., van Dijk, F., Willemsen, G., de Geus, E. J., Milaneschi, Y., Penninx, B. W., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., de Craen, A. J., Uh, H.-W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., The Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Jukema, J. W., van der Harst, P., Sijbrands, E. J., Hottenga, J.-J., Uitterlinden, A. G., Swertz, M. A., van Ommen, G.-J.-B., de Bakker, P. I., Slagboom, P. E., Boomsma, D. I., Wijmenga, C., & van Duijn, C. M. (2015). Genome of the Netherlands population - specific imputations identify an ABCA6 variant associated with cholesterol levels. Nature Communications, 6: 6065. |
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Vaughan, A. E., Brumwell, A. N., Xi, Y., Gotts, J. E., Brownfield, D. G., Treutlein, B., Tan, K., Tan, V., Liu, F. C., Looney, M. R., Matthay, M. A., Rock, J. R., & Chapman, H. A. (2015). Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury. Nature, 517(7536), 621-625. |
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Wei, Y.-N., Hu, H.-Y., Xie, G.-C., Fu, N., Ning, Z.-B., Zeng, R., & Khaitovich, P. (2015). Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. Genome Biology, 16: 41. |
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Weiß, C. L., Dannemann, M., Prüfer, K., & Burbano, H. A. (2015). Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data. eLife, 4: e10005. |
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White, L., Romagné, F., Müller, E., Erlebach, E., Weihmann, A., Parra, G., Andrés, A. M., & Castellano, S. (2015). Genetic adaptation to levels of dietary selenium in recent human history. Molecular Biology and Evolution, 32(6), 1507-1518. |
2014
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Andrés, A. M., & Nowick, K. (2014). Editorial overview: Genetics of human evolution: The genetics of human origins. Current Opinion in Genetics & Development, 29, v-vii. |
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Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology, 153(3), 435-448. |
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Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One, 9(6): e9911. |
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Benazzi, S., Peresani, M., Talamo, S., Fu, Q., Mannino, M. A., Richards, M. P., & Hublin, J.-J. (2014). A reassessment of the presumed Neandertal remains from San Bernardino Cave, Italy. Journal of Human Evolution, 66(1), 89-94. |
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Bozek, K., Wei, Y., Yan, Z., Liu, X., Xiong, J., Sugimoto, M., Tomita, M., Pääbo, S., Pieszek, R., Sherwood, C. C., Hof, P. R., Ely, J. J., Steinhauser, D., Bangsbo, J., Willmitzer, L., Hansson, O., Call, J., Giavalisco, P., & Khaitovich, P. (2014). Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness. PLoS Biology, 12(5): e1001871. |
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Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2014). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences, 281(1774): 20132072. |
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Carneiro, M., Albert, F. W., Afonso, S., Pereira, R. J., Burbano, H. A., Campos, R., Melo-Ferreira, J., Blanco-Aguiar, J. A., Villafuerte, R., Nachman, M. W., Good, J. M., & Ferrand, N. (2014). The genomic architecture of population divergence between subspecies of the European rabbit. PLoS Genetics, 10(8): e1003519. |
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Carneiro, M., Rubin, C.-J., Palma, F. D., Albert, F. W., Alföldi, J., Barrio, A. M., Pielberg, G., Rafati, N., Sayyab, S., Turner-Maier, J., Younis, S., Afonso, S., Aken, B., Alves, J. M., Barrell, D., Bolet, G., Boucher, S., Burbano, H. A., Campos, R., Chang, J. L., Duranthon, V., Fontanesi, L., Garreau, H., Heiman, D., Johnson, J., Mage, R. G., Peng, Z., Queney, G., Rogel-Gaillard, C., Ruffier, M., Searle, S., Villafuerte, R., Xiong, A., Young, S., Forsberg-Nilsson, K., Good, J. M., Lander, E. S., Ferrand, N., Lindblad-Toh, K., & Andersson, L. (2014). Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science, 345(6200), 1074-1079. |
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Castellano, S., Parra, G., Sánchez-Quinto, F. A., Racimo, F., Kuhlwilm, M., Kircher, M., Sawyer, S., Fu, Q., Heinze, A., Nickel, B., Dabney, J., Siebauer, M. F., White, L., Burbano, H. A., Renaud, G., Stenzel, U., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Shunkov, M. V., Derevianko, A. P., Viola, B., Meyer, M., Kelso, J., Andrés, A. M., & Pääbo, S. (2014). Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America, 111(18), 6666-6671. |
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Dabney, J., Meyer, M., & Pääbo, S. (2014). Ancient DNA damage. In E. C. Friedberg, S. J. Elledge, A. R. Lehmann, T. Lindahl, & M. Muzi-Falconi ( |
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Deelen, P., Menelaou, A., van Leeuwen, E. M., Kanterakis, A., van Dijk, F., Medina-Gomez, C., Francioli, L. C., Hottenga, J. J., Karssen, L. C., Estrada, K., Kreiner-Møller, E., Rivadeneira, F., van Setten, J., Gutierrez-Achury, J., Westra, H.-J., Franke, L., van Enckevort, D., Dijkstra, M., Byelas, H., van Duijn, C. M., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, de Bakker, P. I. W., Wijmenga, C., & Swertz, M. A. (2014). Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Human Genetics, 22(11), 1321-1326. |
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Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics, 22(2), 228-237. |
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Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development, 29, 9-14. |
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Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics, 94(5), 721-733. |
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Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics, 10(2): e1004128. |
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Fu, Q., Li, H., Moorjani, P., Jay, F., Slepchenko, S. M., Bondarev, A. A., Johnson, P. L. F., Ayinuer-Petri, A., Prüfer, K., de Filippo, C., Meyer, M., Zwyns, N., Salazar García, D. C., Kuzmin, Y. V., Keates, S. G., Kosintsev, P. A., Razhev, D. I., Richards, M. P., Peristov, N. V., Lachmann, M., Douka, K., Higham, T. F. G., Slatkin, M., Hublin, J.-J., Reich, D., Kelso, J., Viola, B., & Pääbo, S. (2014). Genome sequence of a 45,000-year-old modern human from western Siberia. Nature, 514(7523), 445-449. |
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Gansauge, M.-T., & Meyer, M. (2014). Selective enrichment of damaged DNA molecules for ancient genome sequencing. Genome Research, 24(9), 1543-1549. |
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Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging, 6(6), 454-467. |
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Gokhman, D., Lavi, E., Prüfer, K., Fraga, M. F., Riancho, J. A., Kelso, J., Pääbo, S., Meshorer, E., & Carmel, L. (2014). Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science, 344(6183), 523-527. |
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Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution, 75, 143-152. |
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Gustavino, B., Meschini, R., Franzetti, G., Gratton, P., Allegrucci, G., & Sbordoni, V. (2014). Genotoxicity testing for radon exposure: Dolichopoda (Orthoptera, Rhaphidophoridae) as potential bio-indicator of confined environments. Current Zoology, 60(2), 299-307. |
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He, Z., Bammann, H., Han, D., Xie, G., & Khaitovich, P. (2014). Conserved expression of lincRNA during human and macaque prefrontal cortex development and maturation. RNA, 20(7), 1103-1111. |
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Hellenthal, G., Busby, G. B. J., Band, G., Wilson, J. F., Capelli, C., Falush, D., & Myers, S. (2014). A genetic atlas of human admixture history. Science, 373(6172), 747-751. |
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Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology, 14: 190. |
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Heyne, H. O., Lautenschläger, S., Nelson, R., Besnier, F., Rotival, M., Cagan, A., Kozhemyakina, R., Plyusnina, I. Z., Trut, L., Carlborg, Ö., Petretto, E., Kruglyak, L., Pääbo, S., Schöneberg, T., & Albert, F. W. (2014). Genetic influences on brain gene expression in rats selected for tameness and aggression. Genetics, 198(3), 1277-1290. |
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Key, F. M., Teixeira, J. C., de Filippo, C., & Andrés, A. M. (2014). Advantageous diversity maintained by balancing selection in humans. Current Opinion in Genetics & Development, 29, 45-51. |
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Khrameeva, E. E., Bozek, K., He, L., Yan, Z., Jiang, X., Wei, Y., Tang, K., Gelfand, M. S., Prüfer, K., Kelso, J., Pääbo, S., Giavalisco, P., Lachmann, M., & Khaitovich, P. (2014). Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications, 5: 3584. |
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Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics, 94(3), 426-436. |
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Lee, C.-H., Chiang, S.-L., Ko, A.-M.-S., Hua, C.-H., Tsai, M.-H., Warnakulasuriya, S., Ibrahim, S. O., Sunarjo,.-., Zain, R. B., Ling, T.-Y., Huang, C.-L., Lane, H.-Y., Lin, C.-C., & Ko, Y.-C. (2014). Betel-quid dependence domains and syndrome associated with betel-quid ingredients among chewers: An Asian multi-country evidence. Addiction, 109(7), 1194-1204. |
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Li, J., Quinque, D., Horz, H.-P., Li, M., Rzhetskaya, M., Raff, J. A., Hayes, M. G., & Stoneking, M. (2014). Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiology, 14: 316. |
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Lindskog, C., Kuhlwilm, M., Davierwala, A., Fu, N., Hegde, G., Uhlén, M., Navani, S., Pääbo, S., & Pontén, a. F. (2014). Analysis of candidate genes for lineage-specific expression changes in humans and primates. Journal of Proteome Research, 13(8), 3596-3606. |
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Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics, 5: 13. |
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Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications, 5: 4689. |
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Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology, 24(8), 875-879. |
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Malaspinas, A.-S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y., Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D., & Willerslev, E. (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology, 24(21), R1035-R1037. |
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Meyer, M., Fu, Q., Ayinuer-Petri, A., Glocke, I., Nickel, B., Arsuaga, J.-L., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., & Pääbo, S. (2014). A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature, 505(7483), 403-406. |
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Mitchell, K. J., Pratt, R. C., Watson, L. N., Gibb, G. C., Llamas, B., Kasper, M., Edson, J., Hopwood, B., Male, D., Armstrong, K. N., Meyer, M., Hofreiter, M., Austin, J., Donnellan, S. C., Lee, M. S. Y., Phillips, M. J., & Cooper, A. (2014). Molecular phylogeny, biogeography, and habitat preference evolution of marsupials. Molecular Biology and Evolution, 31(9), 2322-2330. |
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Pugach, I., & Stoneking, M. (2013). Reply to Price and Bird: No inconsistency between the date of gene flow from India and the Australian archaeological record. Proceedings of the National Academy of Sciences of the United States of America, 110(32): E2949. |
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2012
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