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Christina (Tina) Warinner

Group leader

Department of Archaeogenetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig

e-mail: christina_warinner@[>>> Please remove the text! <<<]eva.mpg.de

Websites
Publications

Christina (Tina) Warinner is a Group Leader in the Department of Archaeogenetics at the Max Planck Institute for Evolutionary Anthropology and an Associate Professor of Anthropology at Harvard University. In addition, she is the Sally Starling Seaver Associate Professor at the Radcliffe Institute and a University Professor in the Faculty of Biological Sciences at Friedrich Schiller University in Jena, Germany.

Warinner specializes in biomolecular archaeology, with an emphasis on reconstructing the prehistory of human foods and the evolution of the microbiome. She is known for her pioneering work in ancient DNA and proteins research, which has contributed significant insights into prehistoric human health, the ancestral human microbiome, the origins of dairying, and past human population history. In 2014 she published the first detailed metagenomic and metaproteomic characterization of the ancient human oral microbiome, and in 2015, she published a seminal study on the identification of milk proteins in ancient dental calculus and the reconstruction of prehistoric European dairying practices. In the same year, she was also part of a research team that published the first South American hunter-gatherer gut microbiome and identified Treponema as a key missing ancestral microbe in the gut microbiome of industrialized societies. Later, she demonstrated that full mitochondrial genomes could be recovered from dental calculus, opening new opportunities for less destructive methods of collaborative paleogenomics research with Native American tribes and communities. Over the last 5 years, she and her colleagues have documented the changing ecology and evolution of the human oral and gut microbiomes, including publishing the oldest microbiome to date from a 100,000-year-old Neanderthal. Her work has contributed to identifying the cause of the 1545 Mexican cocoliztli epidemic and to revealing the roles of women in European medieval book production. She and her team have reconstructed the early population history of the Tibetan Plateau and Himalayan arc, which included the first published complete genomes of ancient East Asians, and they have also investigated the genomic prehistory of western China, where they demonstrated that the Tarim Basin mummies are direct descendants of a highly isolated ancient Pleistocene population. Her team has reconstructed a 6,000-year population history of Mongolia and southern Siberia, and they have also documented the earliest direct evidence of dairying across the Eurasian steppe, stretching from the Black Sea to Mongolia. She is currently leading a large multidisciplinary project in Mongolia combining archaeology, ethnography, microbiology, and microbiome sciences to understand the origins of dairying and the rich and complex history of human cultural and biological adaptations to novel foods.

She has published numerous peer-reviewed articles in leading scientific journals such as Nature, Science, Cell, Nature Genetics, PNAS, Science Advances, Current Biology,Nature Communications, Current Anthropology, Latin American Antiquity, the American Journal of Physical Anthropology, and the Journal of Archaeological Science, as well as two books: Method and Theory in Paleoethnobotany (University Press of Colorado) and Ancient Maya Color (University of Texas Press). She has contributed to eighth edition of Renfrew and Bahn’s Archaeology: Theory, Methods, and Practice, as well as to books on the prehistory of Mexico and Alaska. For a comprehensive list, see the publications page of her research website. Warinner has served on funding review panels for the US National Institutes of Health and the European Commission, and she currently serves on multiple scientific advisory boards, steering committees, and standing committees related to microbiome research, professional and research ethics, and scientific practice. Warinner strives to make her research and data as accessible as possible, and since 2014, >75% of her journal research articles are available in open access format. Additionally, all published protocols and datasets generated by her lab are available in open access online repositories through protocols.io, NCBI, ENA, and ProteomeXchange, and are also curated on the data resource page of her research website.

Warinner is a 2014 US National Academy of Sciences Kavli Fellow and a 2012 TED Fellow, and her TED Talks have been viewed more than 2 million times. In addition to her research, she is actively engaged in scientific and public outreach and has spoken around the world, ranging from classroom visits to public lectures in partnership with the Leakey Foundation, the Royal Society of London, the Wellcome Trust, EMBL, the American Museum of Natural History, the California Academy of Sciences, the Sino-Danish Center, and the National Autonomous University of Mexico. In 2019, she co-organized the Wenner Gren Symposium on “Cultures of Fermentation” in Cascais, Portugal and the 2019 German Bundesministerium für Bildung und Forschung “Microbes on the Move” conference in Bishkek, Kyrgyzstan and Ulaanbaatar, Mongolia. Warinner was named one of the Top 10 Scientists to Watch in 2017 by Science News, and her work was featured in the PBS NOVA documentary “Secrets of the Sky Tombs”. In 2017, she created the Adventures in Archaeological Science coloring book, now available in more than 30 languages, including many indigenous and underrepresented languages.

Warinner received her MA and PhD at Harvard University and completed her postdoctoral training at the Centre for Evolutionary Medicine at the University of Zürich, Switzerland and the University of Oklahoma. She was previously a Presidential Research Professor and Assistant Professor of Anthropology at the University of Oklahoma. 

Websites

For more information about her research and publications, please visit:
http://www.christinawarinner.com

Publications

2024

Bayarsaikhan, J., Turbat, T., Bayandelger, C., Tuvshinjargal, T., Wang, J., Chechushkov, I., Uetsuki, M., Isahaya, N., Hudson, M., Shiraishi, N., Li, Y., Zhang, C., Eregzen, G., Caspari, G., López-Calle, P., Conver, J. L., Tressières, G., Chauvey, L., Birgel, J., Erdene-Ochir, N.-O., Bemmann, J., Hodgins, G., Richter, K. K., Orlando, L., Warinner, C., & Taylor William, W. T. T. (2024). The origins of saddles and riding technology in East Asia: discoveries from the Mongolian Altai. Antiquity, 98(397), 102-118.
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2023

Velsko, I. M., Gallois, S., Stahl, R., Henry, A. G., & Warinner, C. (2023). High conservation of the dental plaque microbiome across populations with differing subsistence strategies and levels of market integration. Molecular Ecology, 32(14), 3872-3891.
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Lee, J., Miller, B. K., Bayarsaikhan, J., Johannesson, E., Ventresca Miller, A., Warinner, C. G., & Jeong, C. (2023). Genetic population structure of the Xiongnu Empire at imperial and local scales. Science Advances, 9(15): eadf3904.
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Klapper, M., Hübner, A., Ibrahim, A., Wasmuth, I., Borry, M., Haensch, V. G., Zhang, S., Al-Jammal, W. K., Suma, H., Fellows Yates, J. A., Frangenberg, J., Velsko, I. M., Chowdhury, S., Herbst, R., Bratovanov, E. V., Dahse, H.-M., Horch, T., Hertweck, C., González Morales, M. R., Straus, L. G., Vilotijevic, I., Warinner, C., & Stallforth, P. (2023). Natural products from reconstructed bacterial genomes of the Middle and Upper Paleolithic. Science, 380(6645), 619-624.
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Paladugu, R., Richter, K. K., Valente, M. J., Gabriel, S., Detry, C., Warinner, C., & Dias, C. B. (2023). Your horse is a donkey! Identifying domesticated equids from Western Iberia using collagen fingerprinting. Journal of Archaeological Science, 149: 105696.
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Warinner, C., & Fagernäs, Z. (2023). Dental calculus. In A. M. Pollard, & C. A. Makarewicz (Eds.), Handbook of Archaeological Sciences, 2nd Edition (pp. 575-590). Hoboken, NJ: Wiley.
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Warinner, C., & Hendy, J. (2023). Abenturak arkeologia-zientzian [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Advenchaz eena archaeological saiyens [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Avonture in argeologiese wetenskap [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2023). B’eenik sa nawink ut tzolok rik’in junxil na’leb’ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Cuộc phiêu lủu trong khoa học khảo cổ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2023). Eventyr i arkæologiens videnskab [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2023). Ìrìnkèrindò nínú Sáyẹ́ǹsì Onímọ̀-Ohun-Àtijọ́ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2023). Kasada a Ilmin Kufai [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Maitemogelo mo boitseanape jwa thutamarope [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Masapo ma zebi za arkeolojia [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Njem nlegharị anya nchọpụta na sayensị nka mmụta ihe ọkpụ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). Njũka-narua cia Ũmenyi wa ma wa archaeology [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). ሽርሽር ወደ የጥንታዊ ታሪክ ቅርሶች ጥናት ሥነ-ጥበብ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2023). ጉዕዞ ናብ ሳይንሳዊ መፅናዕቲ ስነ-ጥንቲ [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Wegner, C.-E., Stahl, R., Velsko, I. M., Hübner, A., Fagernäs, Z., Warinner, C., Lehmann, R., Ritschel, T., Totsche, K. U., & Küsel, K. (2023). A glimpse of the paleome in endolithic microbial communities. Microbiome, 11(1): 210.
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2022

Moraitou, M., Forsythe, A., Fellows Yates, J. A., Brealey, J. C., Warinner, C. G., & Guschanski, K. (2022). Ecology, not host phylogeny, shapes the oral microbiome in closely related species. Molecular Biology and Evolution, 39(12): msac263,.
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Dimopoulos, E. A., Carmagnini, A., Velsko, I. M., Warinner, C., Larson, G., Frantz, L. A. F., & Irving-Pease, E. K. (2022). HAYSTAC: A Bayesian framework for robust and rapid species identification in high-throughput sequencing data. PLoS Computational Biology, 18(9): e1010493.
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Velsko, I. M., Semerau, L., Inskip, S. A., García-Collado, M. I., Ziesemer, K., Ruber, M. S., de Enrich, L. B. L., García, J. M. M., Valle, D. G., Ruiz, A. C. P., Salazar-García, D. C., Hoogland, M. L. P., & Warinner, C. (2022). Ancient dental calculus preserves signatures of biofilm succession and interindividual variation independent of dental pathology. PNAS Nexus, 1(4).
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Warinner, C., Korzow Richter, K., & Collins, M. J. (2022). Paleoproteomics. Chemical Reviews, 122(16), 13401-13446.
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Smith, T. M., & Warinner, C. G. (2022). Developmental, evolutionary, and behavioural perspectives on oral health. In K. A. Plomp, C. A. Roberts, S. Elton, & G. R. Bentley (Eds.), Palaeopathology and evolutionary medicine: an integrated approach (pp. 95-119). Oxford: Oxford University Press.
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Scott, A., Reinhold, S., Hermes, T., Kalmykov, A. A., Belinskiy, A., Buzhilova, A., Berezina, N., Kantorovich, A. R., Maslov, V. E., Guliyev, F., Lyonnet, B., Gasimov, P., Jalilov, B., Eminli, J., Iskandarov, E., Hammer, E., Nugent, S. E., Hagan, R., Majander, K., Onkamo, P., Nordqvist, K., Shishlina, N., Kaverzneva, E., Korolev, A. I., Khokhlov, A. A., Smolyaninov, R. V., Sharapova, S. V., Krause, R., Karapetian, M., Stolarczyk, E., Krause, J., Hansen, S., Haak, W., & Warinner, C. G. (2022). Emergence and intensification of dairying in the Caucasus and Eurasian steppes. Nature Ecology & Evolution, 6, 813-822.
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Fagernäs, Z., Salazar-García, D. C., Haber Uriarte, M., Avilés Fernández, A., Henry, A. G., Lomba Maurandi, J., Ozga, A. T., Velsko, I. M., & Warinner, C. G. (2022). Understanding the microbial biogeography of ancient human dentitions to guide study design and interpretation. FEMS Microbes, 3: xtac006.
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Liu, C.-C., Witonsky, D., Gosling, A., Lee, J. H., Ringbauer, H., Hagan, R., Patel, N., Stahl, R., Novembre, J., Aldenderfer, M., Warinner, C. G., Di Rienzo, A., & Jeong, C. (2022). Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors. Nature Communications, 13: 1203.
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Andrades Valtueña, A., Neumann, G., Spyrou, M. A., Musralina, L., Aron, F., Beisenov, A., Belinskiy, A. B., Bos, K. I., Buzhilova, A., Conrad, M., Djansugurova, L. B., Dobeš, M., Ernée, M., Fernández-Eraso, J., Frohlich, B., Furmanek, M., Hałuszko, A., Hansen, S., Harney, É., Hiss, A. N., Hübner, A., Key, F. M., Khussainova, E., Kitov, E., Kitova, A. O., Knipper, C., Kühnert, D., Lalueza-Fox, C., Littleton, J., Massy, K., Mittnik, A., Mujika-Alustiza, J. A., Olalde, I., Papac, L., Penske, S. E., Peška, J., Pinhasi, R., Reich, D., Reinhold, S., Stahl, R., Stäuble, H., Tukhbatova, R. I., Vasilyev, S., Veselovskaya, E., Warinner, C. G., Stockhammer, P. W., Haak, W., Krause, J., & Herbig, A. (2022). Stone Age Yersinia pestis genomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences of the United States of America, 119(17): 2116722119.
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Borry, M., Hübner, A., & Warinner, C. (2022). sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files. The Journal of Open Source Software, 7(74): 4360.
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Richter, K. K., Codlin, M. C., Seabrook, M., & Warinner, C. G. (2022). A primer for ZooMS applications in archaeology. Proceedings of the National Academy of Sciences, 119(20): e2109323119.
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Warinner, C. G. (2022). An archaeology of microbes. Journal of Anthropological Research, 78(4).
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Warinner, C., & Hendy, J. (2022). Avonture in Argeologiese Wetenskap [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2022). Izigigaba ze Isayensi Yemivubukulo [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2022). Kalandozás a természettudományos régészetben [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2022). Kenajeiyetatsiri anta Iyotakantayetirori pesatopee [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2022). Leeto le hlollang la Mahlale a Boepolli ba Nalane [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2022). Mesko tee naki kai nato arquelógica ani onan shinan ikainko [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2022). Muun batsama wajakbau ejetusa dekamu [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2022). Neivagetasirira anta ogari yogotantakarira ashi pairanipagetirira [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2022). Pakikipagsapalaran sa Arkeolohiya [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2022). Sarantawinaka Jaqina nayra kamaña jaqawipa yänakapampi [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2022). Upektzil k’u ‘ k’u ‘ amana’an ichil akuuchil uxb’en, le’ek b’iki tiyan unu’kul akuxtal [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut for Evolutionary Anthropology.
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Warinner, C., & Hendy, J. (2022). Warasa wekamu Ciencia Arqueológicanam [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2022). Wotayeñets Arr Ciencias Arqueológicas [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für evolutionäre Anthropologie.
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2021

Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46.
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Zhang, F., Ning, C., Scott, A., Fu, Q., Bjorn, R., Li, W., Wei, D., Wang, W., Fan, L., Abuduresule, I., Hu, X., Ruan, Q., Niyazi, A., Dong, G., Cao, P., Liu, F., Dai, Q., Feng, X., Yang, R., Tang, Z., Ma, P., Li, C., Gao, S., Xu, Y., Wu, S., Wen, S., Zhu, H., Zhou, H., Robbeets, M., Kumar, V., Krause, J., Warinner, C. G., Jeong, C., & Cui, Y. (2021). The genomic origins of the Bronze Age Tarim Basin mummies. Nature, 599(7884), 256-261.
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Kocher, A., Papac, L., Barquera, R., Key, F. M., Spyrou, M. A., Hübler, R., Rohrlach, A. B., Aron, F., Stahl, R., Wissgott, A., van Bömmel, F., Pfefferkorn, M., Mittnik, A., Villalba-Mouco, V., Neumann, G. U., Rivollat, M., Loosdrecht, M. S. v. d., Majander, K., Tukhbatova, R. I., Musralina, L., Ghalichi, A., Penske, S., Sabin, S., Michel, M., Gretzinger, J., Nelson, E. A., Ferraz, T., Nägele, K., Parker, C. E., Keller, M., Guevara, E., Feldman, M., Eisenmann, S., Skourtanioti, E., Giffin, K., Gnecchi-Ruscone, G. A., Friederich, S., Schimmenti, V., Khartanovich, V., Karapetian, M. K., Chaplygin, M. S., Kufterin, V. V., Khokhlov, A. A., Chizhevsky, A. A., Stashenkov, D. A., Kochkina, A. F., Tejedor-Rodríguez, C., de Lagrán, Í.-G.-M., Arcusa-Magallón, H., Garrido-Pena, R., Royo-Guillén, J. I., Novácek, J., Rottier, S., Kacki, S., Saintot, S., Kaverzneva, E., Belinskiy, A. B., Velemínský, P., Limburský, P., Kostka, M., Loe, L., Popescu, E., Clarke, R., Lyons, A., Mortimer, R., Sajantila, A., de Armas, Y. C., Godoy, S. T. H., Hernández-Zaragoza, D. I., Pearson, J., Binder, D., Lefranc, P., Kantorovich, A. R., Maslov, V. E., Lai, L., Zoledziewska, M., Beckett, J. F., Langová, M., Danielisová, A., Ingman, T., Atiénzar, G. G., de Ibáñez, M. P. M., Romero, A., Sperduti, A., Beckett, S., Salter, S. J., Zilivinskaya, E. D., Vasilev, D. V., von Heyking, K., Burger, R. L., Salazar, L. C., Amkreutz, L., Navruzbekov, M., Rosenstock, E., Alonso-Fernández, C., Slavchev, V., Kalmykov, A. A., Atabiev, B. C., Batieva, E., Calmet, M. A., Llamas, B., Schultz, M., Krauß, R., Jiménez-Echevarría, J., Francken, M., Shnaider, S., de Knijff, P., Altena, E., de Vijver, K. V., Fehren-Schmitz, L., Tung, T. A., Lösch, S., Dobrovolskaya, M., Makarov, N., Read, C., Twest, M. V., Sagona, C., Ramsl, P. C., Akar, M., Yener, K. A., Ballestero, E. C., Cucca, F., Mazzarello, V., Utrilla, P., Rademaker, K., Fernández-Domínguez, E., Baird, D., Semal, P., Márquez-Morfín, L., Roksandic, M., Steiner, H., Salazar-García, D. C., Shishlina, N., Erdal, Y. S., Hallgren, F., Boyadzhiev, Y., Boyadzhiev, K., Küßner, M., Sayer, D., Onkamo, P., Skeates, R., Rojo-Guerra, M., Buzhilova, A., Khussainova, E., Djansugurova, L. B., Beisenov, A. Z., Samashev, Z., Massy, K., Mannino, M., Moiseyev, V., Mannermaa, K., Balanovsky, O., Deguilloux, M.-F., Reinhold, S., Hansen, S., Kitov, E. P., Dobeš, M., Ernée, M., Meller, H., Alt, K. W., Prüfer, K., Warinner, C., Schiffels, S., Stockhammer, P. W., Bos, K., Posth, C., Herbig, A., Haak, W., Krause, J., & Kühnert, D. (2021). Ten millennia of hepatitis B virus evolution. Science, 374(6564), 182-188.
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Hendy, J., Rest, M., Aldenderfer, M., & Warinner, C. (2021). Cultures of fermentation: living with microbes. Current Anthropology, 62(Suppl 24): 715476.
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Reichhardt, B., Enkh-Amgala, Z., Warinner, C., & Rest, M. (2021). Enduring cycles: Documenting dairying in Mongolia and the Alps. Current Anthropology, 62(Suppl 24): 716065.
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Warinner, C. G., Velsko, I. M., & Fellows Yates, J. A. (2021). Reply to Ben-Dor et al.: Oral bacteria of Neanderthals and modern humans exhibit evidence of starch adaptation. Proceedings of the National Academy of Sciences, 118: e2112526118.
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Borry, M., Hübner, A., Rohrlach, A. B., & Warinner, C. (2021). PyDamage: automated ancient damage identification and estimation for contigs in ancient DNAde novoassembly. PeerJ, 9: e11845.
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Jacobson, D., Moore, K., Gunderson, C., Rowland, M., Austin, R., Honap, T. P., Xu, J., Warinner, C., Sankaranarayanan, K., Jr, L., & M., C. (2021). Shifts in gut and vaginal microbiomes are associated with cancer recurrence time in women with ovarian cancer. PeerJ: Life & Environment, 11574.
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Wibowo, M. C., Yang, Z., Borry, M., Hübner, A., Huang, K. D., Tierney, B. T., Zimmerman, S., Barajas-Olmos, F., Contreras-Cubas, C., García-Ortiz, H., Martínez-Hernández, A., Luber, J. M., Kirstahler, P., Blohm, T., Smiley, F. E., Arnold, R., Ballal, S. A., Pamp, S. J., Russ, J., Maixner, F., Rota-Stabelli, O., Segata, N., Reinhard, K., Orozco, L., Warinner, C., Snow, M., LeBlanc, S., & Kostic, A. D. (2021). Reconstruction of ancient microbial genomes from the human gut. Nature, 594, 234-239.
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Taylor, W. T. T., Pruvost, M., Posth, C., Rendu, W., Krajcarz, M. T., Abdykanova, A., Brancaleoni, G., Spengler, R., Hermes, T., Schiavinato, S., Hodgins, G., Stahl, R., Min, J., Alisher kyzy, S., Fedorowicz, S., Orlando, L., Douka, K., Krivoshapkin, A., Jeong, C., Warinner, C., & Shnaider, S. (2021). Evidence for early dispersal of domestic sheep into Central Asia. Nature Human Behaviour, 5, 1169-1179.
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Orlando, L., Allaby, R., Skoglund, P., Sarkissian, C. D., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., & Warinner, C. G. (2021). Ancient DNA analysis. Nature reviews: Methods primers, 1(14): s43586-020-00011-0.
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Rampelli, S., Turroni, S., Mallol, C., Hernandez, C., Galván, B., Sistiaga, A., Biagi, E., Astolfi, A., Brigidi, P., Benazzi, S., Lewis, C. M., Warinner, C., Hofman, C. A., Schnorr, S. L., & Candela, M. (2021). Components of a Neanderthal gut microbiome recovered from fecal sediments from El Salt. Communications Biology, 4: 169.
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Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2021). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31.
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Fellows Yates, J. A., Velsko, I. M., Aron, F., Posth, C., Hofman, C. A., Austin, R. M., Parker, C. E., Mann, A. E., Nägele, K., Arthur, K. W., Arthur, J. W., Bauer, C. C., Crevecoeur, I., Cupillard, C., Curtis, M. C., Dalén, L., Díaz-Zorita Bonilla, M., Díez Fernández-Lomana, J. C., Drucker, D. G., Escribano Escrivá, E., Francken, M., Gibbon, V. E., González Morales, M. R., Grande Mateu, A., Harvati, K., Henry, A. G., Humphrey, L., Menéndez, M., Mihailović, D., Peresani, M., Rodríguez Moroder, S., Roksandic, M., Rougier, H., Sázelová, S., Stock, J. T., Straus, L. G., Svoboda, J., Teßmann, B., Walker, M. J., Power, R. C., Lewis, C. M., Sankaranarayanan, K., Guschanski, K., Wrangham, R. W., Dewhirst, F. E., Salazar-García, D. C., Krause, J., Herbig, A., & Warinner, C. G. (2021). The evolution and changing ecology of the African hominid oral microbiome. Proceedings of the National Academy of Sciences, 118(20): e2021655118.
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Scott, A., Power, R. C., Altmann-Wendling, V., Artzy, M., Martin, M. A. S., Eisenmann, S., Hagan, R., Salazar-García, D. C., Salmon, Y., Yegorov, D., Milevski, I., Finkelstein, I., Stockhammer, P. W., & Warinner, C. (2021). Exotic foods reveal contact between South Asia and the Near East during the second millennium BCE. Proceedings of the National Academy of Sciences of the United States of America, 118(2): e2014956117.
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Warinner, C., & Hendy, J. (2021). Aventuri în Ştiinţe Arheologice [Adventures in archaeological science coloring book]. Leipzig: Max Planck Institut für Evolutionäre Anthropologie.
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Warinner, C., & Hendy, J. (2021). Huk niraq puriykuna ciencia arqueológica nisqapi [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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2020

Jeong, C., Wang, K., Wilkin, S., Taylor, W. T. T., Miller, B. K., Bemmann, J. H., Stahl, R., Chiovelli, C., Knolle, F., Ulziibayar, S., Khatanbaatar, D., Erdenebaatar, D., Erdenebat, U., Ochir, A., Ankhsanaa, G., Vanchigdash, C., Ochir, B., Munkhbayar, C., Tumen, D., Kovalev, A., Kradin, N., Bazarov, B. A., Miyagashev, D. A., Konovalov, P. B., Zhambaltarova, E., Ventresca Miller, A. R., Haak, W., Schiffels, S., Krause, J., Boivin, N. L., Erdene, M., Hendy, J., & Warinner, C. G. (2020). A dynamic 6,000-year genetic history of Eurasia’s eastern steppe. Cell, 183(4), 890-904.e29.
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Hernández-Hernández, O., Hernández-Zaragoza, D. I., Barquera, R., Warinner, C. G., López-Gil, C., Arrieta-Bolaños, E., Clayton, S., Bravo-Acevedo, A., la Cruz, F.-d.-R.-R.-d., Méndez-Mani, P., de Pavón-Vargas, M. l. Á., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Oaxaca, Mexico: Oaxaca city and rural Oaxaca. Human Immunology, 81(9), 553-556.
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Fagernäs, Z., García-Collado, M. I., Hendy, J., Hofman, C. A., Speller, C., Velsko, I. M., & Warinner, C. (2020). A unified protocol for simultaneous extraction of DNA and proteins from archaeological dental calculus. Journal of Archaeological Science, 118: 105135.
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Skourtanioti, E., Erdal, Y. S., Frangipane, M., Balossi Restelli, F., Yener, K. A., Pinnock, F., Matthiae, P., Özbal, R., Schoop, U.-D., Guliyev, F., Akhundov, T., Lyonnet, B., Hammer, E. L., Nugent, S. E., Burri, M., Neumann, G. U., Penske, S. E., Ingman, T., Akar, M., Shafiq, R., Palumbi, G., Eisenmann, S., D’Andrea, M., Rohrlach, A. B., Warinner, C., Jeong, C., Stockhammer, P. W., Haak, W., & Krause, J. (2020). Genomic history of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus. Cell, 181(5), 1158-1175.e28.
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Borry, M., Cordova, B., Perri, A., Wibowo, M., Honap, T. P., Ko, J., Yu, J., Britton, K., Girdland-Flink, L., Power, R. C., Stuijts, I., Salazar-García, D. C., Hofman, C., Hagan, R., Kagoné, T. S., Meda, N., Carabin, H., Jacobson, D., Reinhard, K., Lewis, C., Kostic, A., Jeong, C., Herbig, A., Hübner, A., & Warinner, C. (2020). CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ, 8:e9001.
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Wilkin, S., Ventresca Miller, A., Taylor, W. T. T., Miller, B. K., Hagan, R., Bleasdale, M., Scott, A., Gankhuyg, S., Ramsøe, A., Uliziibayar, S., Trachsel, C., Nanni, P., Grossmann, J., Orlando, L., Horton, M., Stockhammer, P. W., Myagmar, E., Boivin, N., Warinner, C., & Hendy, J. (2020). Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years. Nature Ecology & Evolution, 4(3), 346-355.
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Warinner, C., & Hendy, J. (2020). Адал ябадалта археологи: Шердэдэг ном [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2020). Археолошки авантури [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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2019

Hübler, R., Key, F. M., Warinner, C. G., Bos, K. I., Krause, J., & Herbig, A. (2019). HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology, 20: 280.
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Velsko, I. M., Fellows Yates, J. A., Aron, F., Hagan, R., Frantz, L. A. F., Loe, L., Martinez, J. B. R., Chaves, E., Gosden, C., Larson, G., & Warinner, C. G. (2019). Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage. Microbiome, 7(1): 102.
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Hagan, R., Hofman, C. A., Hübner, A., Reinhard, K., Schnorr, S., Lewis Jr, C. M., Sankaranarayanan, K., & Warinner, C. G. (2019). Comparison of extraction methods for recovering ancient microbial DNA from paleofeces. American Journal of Physical Anthropology, 171(2), 275-284.
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Geber, J., Tromp, M., Scott, A., Bouwman, A., Nanni, P., Grossmann, J., Hendy, J., & Warinner, C. G. (2019). Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine. Proceedings of the National Academy of Sciences of the United States of America, 116(39), 19380-19385.
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Radini, A., Tromp, M., Beach, A. I., Tong, E., Speller, C., McCormick, M., Dudgeon, J. V., Collins, M. J., Rühli, F., Kröger, R., & Warinner, C. G. (2019). Medieval women’s early involvement in manuscript production suggested by lapis lazuli identification in dental calculus. Science Advances, 5(1): eaau7126.
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Warinner, C., & Hendy, J. (2019). Abentüür en Archeologie Wössenschafte [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Arheološke pustolovine [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Aventuras em arqueociências [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Aventuras na arqueologia [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Petualangan dalam ilmu arkeologi [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Przygody z nauką i archeologią [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Seikkailuja Laboratorio-Arkeologiassa [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Ujasiri katika sayansi ya akiolojia [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Археология ғылымындағы тәуекелшілдік [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). Путешествие в мир археологии [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). הרפתקאות בארכיאולוגיה מדעית [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). पुरातात्त्विक विज्ञान सँगको यात्रा [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2019). 탐험고고학 [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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2018

Ziesemer, K. A., Ramos-Madrigal, J., Mann, A. E., Brandt, B. W., Sankaranarayanan, K., Ozga, A. T., Hoogland, M., Hofman, C. A., Salazar-García, D. C., Frohlich, B., Milner, G. R., Stone, A. C., Aldenderfer, M., Lewis Jr, C. M., Hofman, C. L., Warinner, C. G., & Schroeder, H. (2018). The efficacy of whole human genome capture on ancient dental calculus and dentin. American Journal of Physical Anthropology, 168(3), 496-509.
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Lindo, J., Haas, R., Hofman, C., Apata, M., Moraga, M., Verdugo, R., Watson, J. T., Llave, C., Witonsky, D., Beall, C., Warinner, C. G., Novembre, J., Aldenderfer, M., & Di Rienzo, A. (2018). The genetic prehistory of the Andean highlands 7,000 Years BP though European contact. Science Advances, 4(11): 381905.
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Hendy, J., Warinner, C. G., Bouwman, A., Collins, M. J., Fiddyment, S., Fischer, R., Hagan, R., Hofman, C. A., Holst, M., Chaves, E., Klaus, L., Larson, G., Mackie, M., McGrath, K., Mundorff, A. Z., Radini, A., Rao, H., Trachsel, C., Velsko, I. M., & Speller, C. F. (2018). Proteomic evidence of dietary sources in ancient dental calculus. Proceedings of the Royal Society B: Biological Sciences, 285(1883): 20180977.
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Velsko, I. M., Frantz, L. A. F., Herbig, A., Larson, G., & Warinner, C. (2018). Selection of appropriate metagenome taxonomic classifiers for ancient microbiome research. mSystems, 3(4): e00080-18.
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Mann, A., Sabin, S., Ziesemer, K., Vågene, Å. J., Schroeder, H., Ozga, A. T., Sankaranarayanan, K., Hofman, C. A., Fellows Yates, J. A., Salazar-García, D. C., Frohlich, B., Aldenderfer, M., Hoogland, M., Read, C., Milner, G. R., Stone, A. C., Lewis, C. M., Krause, J., Hofman, C., Bos, K. I., & Warinner, C. G. (2018). Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports, 8(1): 9822.
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Martínez Tuñón, A., Robles García, N. M., Clark, D. J., Warinner, C. G., & Tuross, N. (2018). Clandestine pulque production during the sixteenth-century in the Tlacolula Valley, Oaxaca, Mexico. Mexicon, 40(2), 52-59.
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Hendy, J., Welker, F., Demarchi, B., Speller, C., Warinner, C., & Collins, M. J. (2018). A guide to ancient protein studies. Nature Ecology & Evolution, 2, 791-799.
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Vågene, Å. J., Herbig, A., Campana, M. G., Robles García, N. M., Warinner, C., Sabin, S., Spyrou, M. A., Andrades Valtueña, A., Huson, D., Tuross, N., Bos, K. I., & Krause, J. (2018). Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution, 2(3), 520-528.
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Jeong, C., Wilkin, S., Amgalantugs, T., Bouwman, A. S., Taylor, W. T. T., Hagan, R., Bromage, S., Tsolmon, S., Trachsel, C., Grossmann, J., Littleton, J., Makarewicz, C. A., Krigbaum, J., Burri Promerová, M., Scott, A., Davaasambuu, G., Wright, J., Irmer, F., Myagmar, E., Boivin, N. L., Robbeets, M., Rühli, F. J., Krause, J., Frohlich, B., Hendy, J., & Warinner, C. G. (2018). Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proceedings of the National Academy of Sciences of the United States of America, 115(48), E11248-E11255.
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Warinner, C., & Hendy, J. (2018). Arkeoloji Biliminde Maceralar [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Avanture arheologije [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Aventuras en la ciencia arqueológica [Adventurs in archaeolgical science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Aventures en ciències arqueològiques [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Aventures en sciences archéologiques [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Äventyr i Arkeologi [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Avonturen in archeologische wetenschappen [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Avventure nelle scienze archeologiche [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Itech tayekojmej in nemilil wehjkawtamachtil-tilmehj [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Náaysaj óol ti' u xookil yo'osal u xaak'alil úuchben ba'alob ti' u kuxtal máak [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Seiklused laboratoorses arheoloogias [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Περιπέτειες στην Αρχαιομετρία [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). Адал явдалт археологийн шинжлэх ухаан [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). مغامرات في علم الآثار [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). གནའ་རྫས་རྟོག་ཞིབ་ཀྱི་ཚན་རིག་ལ་མྱོང་འཚོལ་བྱེད་། [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). 探検考古科学 [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2018). 探险在考古科学中 [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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2017

Warinner, C., & Hendy, J. (2017). Abenteuer in der Archäologie [Adventures in archaeological science coloring book]. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2017). Adventures in archaeological science: A coloring book. Jena: Max Planck Institut für Menschheitsgeschichte.
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Warinner, C., & Hendy, J. (2017). Adventures in archaeological science. CreateSpace Independent Publishing Plattform.
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Warinner, C., & Hendy, J. (2017). Aventuras en la ciencia arqueológica: Un libro para colorear por Instituto Max Planck de Ciencias de la Historia Humana. [Independently published].
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