Mark Stoneking
Guest
Department of Evolutionary Genetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig
Curriculum Vitae
date of birth: August 1, 1956
Educational History
| University of Oregon | 1974-1977 | Anthropology | B.A. |
| The Pennsylvania State University | 1977-1979 | Genetics | M.S. |
| University of Wisconsin, Madison | 1979-1981 | Genetics | - |
| University of California, Berkeley | 1981-1986 | Genetics | Ph.D. |
Professional History
| 1999-2022 | Group Leader, Max Planck Institute for Evolutionary Anthropology, and Honorary Professor of Biological Anthropology, University of Leipzig, Leipzig, Germany |
| 1998 | Professor of Anthropology, Pennsylvania State University |
| 1996-1997 | Visiting Professor, Zoology Institute, University of Munich |
| 1994-1998 | Associate Professor of Anthropology, Pennsylvania State University |
| 1990-1994 | Assistant Professor, Dept. of Anthropology, Graduate Program in Genetics, and Institute of Molecular Evolutionary Genetics, Pennsylvania State University |
| 1989-1990 | Associate Research Scientist, Dept. of Human Genetics, Cetus Corporation, Emeryville, California |
| 1989 | Staff Scientist, Human Genome Center, Lawrence Berkeley Laboratory, Berkeley |
| 1986-1988 | Postdoctoral Fellow, Dept. of Biochemistry, University of California, Berkeley |
Fellowships, Prizes and Awards
National Science Foundation Graduate Fellowship, 1977-1978, 1979-1981
Pennsylvania State University Graduate Fellowship, 1978-1979
Ernest Brown Babcock Scholarship, University of California, Berkeley, 1985-1986
John Belling Prize in Genetics, University of California, Berkeley, 1990
University of Oregon Outstanding Young Alumnus Award, 1990
Japanese Society for the Promotion of Science Fellowship, 1995
FBI Award for Service to the Forensic DNA Community, 1998
Fellow, American Association for the Advancement of Science, 2000
Visiting Professor, CNRS Laboratory for Biometry and Evolutionary Biology, Lyon, France, February 2016
Eugène Dubois Chair, University of Maastricht, Maastricht, The Netherlands, 2016
Elected to the National Academy of Sciences USA, 2020
Fieldwork
Eastern Indonesia, January-February 1988
Solomon Islands, August-September 2004
Mindanao, Philippines, August 2005
Zambia, August-September 2007
Namibia, May-June 2011
Botswana and Namibia, July-August 2015 (returning genetic results to participating communities)
Professional Activities
Associate Editor: Journal of Human Evolution, 1990-1993; Human Biology, 1993-1997; BioEssays, 2004-2013; Anthropological Science, 2004-2013; Evolutionary Biology, 2007-present; BMC Genetics, 2008-2015; Gene, 2009-2010; Investigative Genetics, 2009-2016; EMBO Reports, 2010-present; Language Dynamics and Change, 2010-present.
Senior Editor, Annals of Human Genetics, 2008-2013.
Technical Working Group, DNA Analysis Methods, FBI, 1993-1998
Defense Science Board Task Force on DNA Technology for Identification of Ancient Remains, 1994-1995
Wellcome Trust Bioarchaeology Panel, 2001-2005
Steering Committee for National Energy Research Council (NERC) Program on Environmental Factors and the Chronology of Human Evolution and Dispersal (EFCHED), 2001-2006
Review Panel, Wenner-Gren Foundation for Anthropological Research, 2007-2008
Advisory Committee, The Role of Culture in Early Expansions of Humans, Heidelberg Academy of Sciences, 2008-present
Advisory Board, US National Evolutionary Synthesis Center, 2011-2014
Chair, Scientific Advisory Committee of the Program on Forensics and Ethnicity, Philippine Genome Center, 2011-present
Review Panel, Portuguese Foundation for Science and Technology, 2013-2014
Scientific Advisory Board, IDEXLYON Program, 2017-present
Publications
2025
Kutanan, W., Woravatin, W., Srikummool, M., Suwannapoom, C., Hübner, A., Kampuansai, J., Khaokiew, C., Schaschl, H., Översti, S., La, D. D., Arias, L., & Stoneking, M. (2025). Maternal genetic origin of Chao Lay coastal maritime populations from Thailand. BMC Biology, 23(1): 146. |
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Zhang, X., Chen, Y., Liang, J., Yang, Y., Chen, H., Chen, Z., Li, M., Chen, S., Chen, T., He, H., Liu, Y., Liu, Z., Han, L., Wu, D., Zou, Z., Qu, Y., Li, M., Stoneking, M., Fu, Q., Xu, S., Zeng, Y.-X., Ma, L., Liu, J., Xu, M., & Zhai, W. (2025). Out-of-Africa migration and clonal expansion of a recombinant Epstein-Barr virus drives frequent nasopharyngeal carcinoma in southern China. National Science Review, 12(4): nwae438. |
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Ma, X., Lu, Y., Stoneking, M., & Xu, S. (2025). Neanderthal adaptive introgression shaped LCT enhancer region diversity without linking to lactase persistence in East Asian populations. Proceedings of the National Academy of Sciences of the United States of America, 122(11): e2404393122. |
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Zhang, Y., Wang, J., Yi, C., Su, Y., Yin, Z., Zhang, S., Jin, L., Stoneking, M., Yang, J., Wang, K., Huang, H., Li, J., & Fan, S. (2025). An ancient regulatory variant of ACSF3 influences the coevolution of increased human height and basal metabolic rate via metabolic homeostasis (advance online). Cell Genomics, 5: 100855. |
Open Access2024
Woravatin, W., Wongkomonched, R., Tassaneeyakul, W., Stoneking, M., Makarawate, P., & Kutanan, W. (2024). Complete mitochondrial genomes of patients from Thailand with cardiovascular diseases. PLoS One, 19(7): e0307036. |
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Thao, D. H., Dinh, T. H., Mitsunaga, S., Duy, L. D., Phuong, N. T., Anh, N. P., Anh, N. T., Duc, B. M., Hue, H. T. T., Ha, N. H., Ton, N. D., Hübner, A., Pakendorf, B., Stoneking, M., Inoue, I., Duong, N. T., & Hai, N. V. (2024). Investigating demic versus cultural diffusion and sex bias in the spread of Austronesian languages in Vietnam. PLoS One, 19(6): e0304964. |
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Fortes-Lima, C. A., Burgarella, C., Hammarén, R., Eriksson, A., Vicente, M., Jolly, C., Semo, A., Gunnink, H., Pacchiarotti, S., Mundeke, L., Matonda, I., Muluwa, J. K., Coutros, P., Nyambe, T. S., Cikomola, J. C., Coetzee, V., de Castro, M., Ebbesen, P., Delanghe, J., Stoneking, M., Barham, L., Lombard, M., Meyer, A., Steyn, M., Malmström, H., Rocha, J., Soodyall, H., Pakendorf, B., Bostoen, K., & Schlebusch, C. M. (2024). The genetic legacy of the expansion of Bantu-speaking peoples in Africa. Nature, 625, 540-547. |
2023
Carlhoff, S. *., Kutanan, W., Rohrlach, A. B., Posth, C., Stoneking, M., Nägele, K., Shoocongdej, R. *., & Krause, J. *. (2023). Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand. Nature Communications, 14(1): 8527. |
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Woravatin, W., Stoneking, M., Srikummool, M., Kampuansai, J., Arias, L., & Kutanan, W. (2023). South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture. PLoS One, 18: e0291547. |
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Oliveira, S., Fehn, A.-M., Amorim, B., Stoneking, M., & Rocha, J. (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38): eadh3822. |
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Arias, L., Emlen, N. Q., Norder, S., Julmi, N., Lemus Serrano, M., Chacon, T., Wiegertjes, J., Howard, A., Azevedo, M. C. B. C., Caine, A., Dunn, S., Stoneking, M., & Van Gijn, R. (2023). Interpreting mismatches between linguistic and genetic patterns among speakers of Tanimuka (Eastern Tukanoan) and Yukuna (Arawakan). Interface Focus, 13(1): 20220056. |
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Stoneking, M., Arias, L., Liu, D., Oliveira, S., Pugach, I., & Rodriguez, J. (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences, 120(4): e22094751. |
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Van Gijn, R., Norder, S., Arias, L., Emlen, N. Q., Azevedo, M. C. B. C., Caine, A., Dunn, S., Howard, A., Julmi, N., Krasnoukhova, O., Stoneking, M., & Wiegertjes, J. (2023). The social lives of isolates (and small language families): The case of the Northwest Amazon. Interface Focus, 13(1). |
2022
Alva, O., Leroy, A., Heiske, M., Pereda-Loth, V., Tisseyre, L., Boland, A., Deleuze, J.-F., Rocha, J., Schlebusch, C., Fortes-Lima, C., Stoneking, M., Radimilahy, C., Rakotoarisoa, J.-A., Letellier, T., & Pierron, D. (2022). The loss of biodiversity in Madagascar is contemporaneous with major demographic events. Current Biology, 32, 4997-5007, e1-e5. |
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Rodriguez, J., Cuales, J. M. D., Herrera, M. J. B., Zubiri, L. A. M., Muallil, R. N., Ishmael, A. I., Jimenez, E. B., Stoneking, M., & De Ungria, M. C. A. (2022). Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago. Frontiers in Genetics, 13: 901515. |
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Liu, Q., Iqbal, M. F., Yaqub, T., Firyal, S., Zhao, Y., Stoneking, M., & Li, M. (2022). The transmission of human mitochondrial DNA in four-generation pedigrees. Human Mutation, 43(9), 1259-1267. |
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Oliveira, S. *., Nägele, K., Carlhoff, S., Pugach, I., Koesbardiati, T., Hübner, A., Meyer, M., Oktaviana, A. A., Takenaka, M., Katagiri, C., Murti, D. B., Putri, R. S., Mahirta, Petchey, F., Higham, T., Higham, C., O’Connor, S., Hawkins, S., Kinaston, R., Bellwood, P., Ono, R., Powell, A., Krause, J. *., Posth, C. *., & Stoneking, M. *. (2022). Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nature Ecology & Evolution, 6, 1024-1034. |
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Liu, D., Peter, B. M., Schiefenhövel, W., Kayser, M., & Stoneking, M. (2022). Assessing human genome-wide variation in the Massim region of Papua New Guinea and implications for the Kula trading tradition. Molecular Biology and Evolution, 39(8): msac165. |
2021
Kutanan, W., Liu, D., Kampuansai, J., Srikummool, M., Srithawong, S., Shoocongdej, R., Sangkhano, S., Ruangchai, S., Pittayaporn, P., Arias, L., & Stoneking, M. (2021). Reconstructing the human genetic history of mainland Southeast Asia: Insights from genome-wide data from Thailand and Laos. Molecular Biology and Evolution, 38(8), 3459-3477. |
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Pakendorf, B., & Stoneking, M. (2021). The genomic prehistory of peoples speaking Khoisan languages. Human Molecular Genetics, 30(2), R49-R55. |
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Pugach, I., Hübner, A., Hung, H.-c., Meyer, M., Carson, M. T., & Stoneking, M. (2021). Ancient DNA from Guam and the peopling of the Pacific. Proceedings of the National Academy of Sciences, 118(1): e202211211. |
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Choin, J., Mendoza-Revilla, J., Arauna, L. R., Cuadros-Espinoza, S., Cassar, O., Larena, M., Ko, A.-M.-S., Harmant, C., Laurent, R., Verdu, P., Laval, G., Boland, A., Olaso, R., Deleuze, J.-F., Valentin, F., Ko, Y.-C., Jakobsson, M., Gessain, A., Excoffier, L., Stoneking, M., Patin, E., & Quintana-Murci, L. (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), 583-589. |
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Guo, S., Huang, S., Jiang, X., Hu, H., Han, D., Moreno, C. S., Fairbrother, G. L., hughes, D. A., Stoneking, M., & Khaitovich, P. (2021). Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn. BMC Genomics, 22: 286. |
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Matsumae, H., Ranacher, P., Savage, P. E., Blasi, D. E., Currie, T. E., Koganebuchi, K., Nishida, N., Sato, T., Tanabe, H., Tajima, A., Brown, S., Stoneking, M., Shimizu, K. K., Oota, H., & Bickel, B. (2021). Exploring correlations in genetic and cultural variation across language families in northeast Asia. Science Advances, 7(34): eabd9223. |
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Stoneking, M. (2021). Genomic insights into the Out-of-Africa dispersal(s) of modern humans. In M. d. L. Muñoz-Moreno, & M. H. Crawford ( |
2020
Telford, M., Hughes, D. A., Juan, D., Stoneking, M., Navarro, A., & Santpere, G. (2020). Expanding the Geographic Characterisation of Epstein–Barr Virus Variation through Gene-Based Approaches. Microorganisms, 8: 1686. |
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Liu, D., Duong, N. T., Ton, N. D., Van Phong, N., Pakendorf, B., Van Hai, N., & Stoneking, M. (2020). Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity. Molecular Biology and Evolution, 37(9): msaa099, pp. 2503-2519. |
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Kutanan, W., Shoocongdej, R., Srikummool, M., Hübner, A., Suttipai, T., Srithawong, S., Kampuansai, J., & Stoneking, M. (2020). Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand. European Journal of Human Genetics, 28, 1563-1579. |
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Yang, M. A., Fan, X., Sun, B., Chen, C., Lang, J., Ko, Y.-C., Tsang, C.-h., Chiu, H., Wang, T., Bao, Q., Wu, X., Hajdinjak, M., Ko, A.-M.-S., Ding, M., Cao, P., Yang, R., Liu, F., Nickel, B., Dai, Q., Feng, X., Zhang, L., Sun, C., Ning, C., Zeng, W., Zhao, Y., Zhang, M., Gao, X., Cui, Y., Reich, D., Stoneking, M., & Fu, Q. (2020). Ancient DNA indicates human population shifts and admixture in northern and southern China. Science, 369(6501), 282-288. |
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Pedro, N., Brucato, N., Fernandes, V., André, M., Saag, L., Pomat, W., Besse, C., Boland, A., Deleuze, J.-F., Clarkson, C., Sudoyo, H., Metspalu, M., Stoneking, M., Cox, M. P., Leavesley, M., Pereira, L., & Ricaut, F.-X. (2020). Papuan mitochondrial genomes and the settlement of Sahul. Journal of Human Genetics, 65(875), 887. |
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Gunnarsdottir, E. D., & Stoneking, M. (2020). Genetic Landscape of Present-Day Hunter-Gatherer Groups. In T. Güldemann ( |
2019
Bücking, R., Cox, M. P., Hudjashov, G., Saag, L., Sudoyo, H., & Stoneking, M. (2019). Archaic mitochondrial DNA inserts in modern day nuclear genomes. BMC Genomics, 20: 1017. |
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Nersisyan, L., Nikoghosyan, M., Arakelyan, A., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others (2019). WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene. Scientific Reports, 9: 18758. |
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Barbieri, C., Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, 36(12), 2698-2713. |
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Hübner, A., Wachsmuth, M., Schröder, R., Li, M., Eis-Hübinger, A. M., Madea, B., & Stoneking, M. (2019). Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome. Scientific Reports, 9: 11219. |
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Kutanan, W., Kampuansai, J., Srikummool, M., Brunelli, A., Ghirotto, S., Arias, L., Macholdt, E., Hübner, A., Schröder, R., & Stoneking, M. (2019). Contrasting paternal and maternal genetic histories of Thai and Lao populations. Molecular Biology and Evolution, 36(7): msz083, pp. 1490-1506. |
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Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, J. S., & Cox, M. P. (2019). Multiple deeply divergent Denisovan ancestries in Papuans. Cell, 117(4), 1010-1021. |
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Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C. J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M. P., Sudoyo, H., Stoneking, M., Pereira, L., & Ricaut, F.-X. (2019). Evidence of Austronesian genetic lineages in East Africa and South Arabia: Complex dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution, 11(3), 748-758. |
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Macholdt, E., Arias, L., Duong, N. T., Ton, N. D., Van Phong, N., Schröder, R., Pakendorf, B., Van Hai, N., & Stoneking, M. (2019). The paternal and maternal genetic history of Vietnamese populations. European Journal of Human Genetics, 28(5), 636-645. |
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Oliveira, S., Hübner, A., Fehn, A.-M., Aço, T., Lages, F., Pakendorf, B., Stoneking, M., & Rocha, J. (2019). The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola. European Journal of Human Genetics, 27, 475-483. |
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Shvetsova, E., Sofronova, A., Monajemi, R., Gagalova, K., Draisma, H. H. M., White, S. J., Santen, G. W. E., Chuva de Sousa Lopes, S. M., Heijmans, B. T., van Meurs, J., Jansen, R., Franke, L., Kielbasa, S. M., den Dunnen, J. T., ´t Hoen, P. A. C., BIOS consortium, GoNL consortium, including authors, Li, M., Stoneking, M., & & others (2019). Skewed X-inactivation is common in the general female population. European Journal of Human Genetics, 27, 455-465. |
2018
Arias, L., Schröder, R., Hübner, A., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). Cultural innovations influence patterns of genetic diversity in Northwestern Amazonia. Molecular Biology and Evolution, 35(11), 2719-2735. |
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Bajic, V., Barbieri, C., Hübner, A., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Roewer, L., Purps, J., Stoneking, M., & Pakendorf, B. (2018). Genetic structure and sex-biased gene flow in the history of southern African populations. American Journal of Physical Anthropology, 167(3): 23694, pp. 656-671. |
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Duong, N. T., Macholdt, E., Ton, N. D., Arias, L., Schröder, R., Phong, N. V., Thuy, V. T. B., Ha, N. H., Hue, H. T. T., Xuan, N. T., Oanh, K. T. P., Hien, L. T. T., Hoang, N. H., Pakendorf, B., Stoneking, M., & Hai, N. V. (2018). Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. Scientific Reports, 8: 11651. |
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Pugach, I., Duggan, A. T., Merriwether, D. A., Friedlaender, F. R., Friedlaender, J. S., & Stoneking, M. (2018). The gateway from near into remote Oceania: New insights from genome-wide data. Molecular Biology and Evolution, 35(4), 871-886. |
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Oliveira, S., Fehn, A.-M., Aço, T., Lages, F., Gayà-Vidal, M., Pakendorf, B., Stoneking, M., & Rocha, J. (2018). Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa. American Journal of Physical Anthropology, 165(3), 518-535. |
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Kutanan, W., Kampuansai, J., Changmai, P., Flegontov, P., Schröder, R., Macholdt, E., Hübner, A., Kangwanpong, D., & Stoneking, M. (2018). Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand. Scientific Reports, 8: 1536. |
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Arias, L., Barbieri, C., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia. American Journal of Physical Anthropology, 165(2), 238-255. |
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Brucato, N., Fernandes, V., Mazières, S., Kusuma, P., Cox, M. P., Ng’ang’a, J. W., Omar, M., Simeone-Senelle, M.-C., Frassati, C., Alshamali, F., Fin, B., Boland, A., Deleuze, J.-F., Stoneking, M., Adelaar, A., Crowther, A., Boivin, N., Pereira, L., Bailly, P., Chiaroni, J., & Ricaut, F.-X. (2018). The Comoros show the earliest Austronesian gene flow into the Swahili corridor. The American Journal of Human Genetics, 102(1), 58-68. |
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Kutanan, W., Kampuansai, J., Brunelli, A., Ghirotto, S., Pittayaporn, P., Ruangchai, S., Schröder, R., Macholdt, E., Srikummool, M., Kangwanpong, D., Hübner, A., Arias, L., & Stoneking, M. (2018). New insights from Thailand into the maternal genetic history of Mainland Southeast Asia. European Journal of Human Genetics, 26, 898-911. |
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Pierron, D., Heiske, M., Razafindrazaka, H., Pereda-loth, V., Sanchez, J., Alva, O., Arachiche, A., Boland, A., Olaso, R., Deleuze, J.-F., Ricaut, F.-X., Rakotoarisoa, J.-A., Radimilahy, C., Stoneking, M., & Letellier, T. (2018). Strong selection during the last millennium for African ancestry in the admixed population of Madagascar. Nature Communications, 9: 932. |
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Stoneking, M. (2018). Mitochondrial DNA. In W. Trevathan ( |
2017
Barbieri, C., Sandoval, J. R., Valqui, J., Shimelman, A., Ziemendorff, S., Schröder, R., Geppert, M., Roewer, L., Gray, R., Stoneking, M., Fujita, R., & Heggarty, P. (2017). Enclaves of genetic diversity resisted Inca impacts on population history. Scientific Reports, 7: 17411. |
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Sarkar, A., Stoneking, M., & Nandineni, M. R. (2017). Unraveling the human salivary microbiome diversity in Indian populations. PLoS One, 12(9): e0184515. |
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Pierron, D., Heiske, M., Razafindrazaka, H., Rakoto, I., Rabetokotany, N., Ravololomanga, B., Rakotozafy, L.-M.-A., Rakotomalala, M. M., Razafiarivony, M., Rasoarifetra, B., Raharijesy, M. A., Razafindralambo, L., Ramilisonina,.-., Fanony, F., Lejamble, S., Thomas, O., Abdallah, A. M., Rocher, C., Arachiche, A., Tonaso, L., Pereda-loth, V., Schiavinato, S., Brucato, N., Ricaut, F.-X., Kusuma, P., Sudoyo, H., Ni, S., Boland, A., Deleuze, J.-F., Beaujard, P., Grange, P., Adelaar, S., Stoneking, M., Rakotoarisoa, J.-A., Radimilahy, C., & Letellier, T. (2017). Genomic landscape of human diversity across Madagascar. Proceedings of the National Academy of Sciences of the United States of America, 114(32), E6498-E6506. |
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Jinam, T. A., Phipps, M. E., Aghakhanian, F., Majumder, P. P., Datar, F., Stoneking, M., Sawai, H., Nishida, N., Tokunaga, K., Kawamura, S., Omoto, K., & Saitou, N. (2017). Discerning the origins of the Negritos, first Sundaland people: Deep divergence and archaic admixture. Genome Biology and Evolution, 9(8), 2013-2022. |
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Stoneking, M. (2017). Genes, culture, and human evolution. OBM Genetics, 1(2). |
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Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Erratum to: Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(6), 803-803. |
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Sohail, M., Vakhrusheva, O. A., Sul, J. H., Pulit, S. L., Francioli, L. C., Genome of the Netherlands Consortium, including, Li, M., Stoneking, M., Alzheimer’s Disease Neuroimaging Initiative, van den Berg, L. H., Veldink, J. H., de Bakker, P. I. W., Bazykin, G. A., Kondrashov, A. S., & Sunyaev, S. R. (2017). Negative selection in humans and fruit flies involves synergistic epistasis. Science, 356(6337), 539-542. |
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Francioli, L. C., Cretu-Stancu, M., Garimella, K. V., Fromer, M., Kloosterman, W. P., Genome of the Netherlands consortium, including, Li, M., Stoneking, M., Samocha, K. E., Neale, B. M., Daly, M. J., Banks, E., DePristo, M. A.., & de Bakker, P. I. (2017). A framework for the detection of de novo mutations in family-based sequencing data. European Journal of Human Genetics, 25, 227-223. |
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Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics, 136(1), 85-98. |
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Stoneking, M. (2017). An introduction to molecular anthropology. New York [u.a.]: Wiley. |
2016
Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F.-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature, 538(7624), 207-214. |
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Stoneking, M. (2016). The contribution of genetic ancestry from archaic humans to modern humans. In M. Tibayrenc, & F. J. Ayala ( |
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Pugach, I., Matveev, R., Spitsyn, V., Makarov, S., Novgorodov, I., Osakovsky, V., Stoneking, M., & Pakendorf, B. (2016). The complex admixture history and recent southern origins of Siberian populations. Molecular Biology and Evolution, 33(7), 1777-1795. |
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Barbieri, C., Hübner, A., Macholdt, E., Ni, S., Lippold, S., Schröder, R., Mpoloka, S. W., Purps, J., Roewer, L., Stoneking, M., & Pakendorf, B. (2016). Refining the Y chromosome phylogeny with southern African sequences. Human Genetics, 135(5), 541-553. |
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Li, M., Rothwell, R., Vermaat, M., Wachsmuth, M., Schröder, R., Laros, J. F., Oven, M. v., Bakker, P. I. d., Bovenberg, J. A., Duijn, C. M. v., Ommen, G.-J.-B.-v., Slagboom, P. E., Swertz, M. A., Wijmenga, C., Genome of the Netherlands Consortium, Kayser, M., Boomsma, D. I., Zöllner, S., Knijff, P. d., & Stoneking, M. (2016). Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: Support for a variable-size bottleneck. Genome Research, 26(4), 417-426. |
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Wachsmuth, M., Hübner, A., Li, M., Madea, B., & Stoneking, M. (2016). Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number. PLoS Genetics, 12(3): e1005939. |
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Engelken, J., Espadas, G., Mancuso, F. M., Bonet, N., Scherr, A.-L., Jímenez-Álvarez, V., Codina-Solà, M., Medina-Stacey, D., Spataro, N., Stoneking, M., Calafell, F., Sabidó, E., & Bosch, E. (2016). Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution, 33(3), 738-754. |
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Ni, S., & Stoneking, M. (2016). Improvement in detection of minor alleles in next generation sequencing by base quality recalibration. BMC Genomics, 17: 139. |
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Stoneking, M. (2016). Archaic genomes and the peopling of South Asia. In G. R. Schug, & S. R. Walimbe ( |
2015
de Boer, M., Tzur, S., van Leeuwen, K., Dencher, P. C., Skorecki, K., Wolach, B., Gavrieli, R., Nasidze, I., Stoneking, M., Tanck, M. W., & Roos, D. (2015). A founder effect for p47phoxTrp193Ter chronic granulomatous disease in Kavkazi Jews. Blood Cells, Molecules, and Diseases, 55(4), 320-327. |
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Palamara, P. F., Francioli, L. C., Wilton, P. R., Genovese, G., Gusev, A., Finucane, H. K., Sankararaman, S., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Sunyaev, S. R., de Bakker, P. I., Wakeley, J., Pe’er, I., & Price, A. L. (2015). Leveraging distant relatedness to quantify human mutation and gene-conversion rates. The American Journal of Human Genetics, 97(6), 775-789. |
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Qin, P., & Stoneking, M. (2015). Denisovan Ancestry in East Eurasian and Native American Populations. Molecular Biology and Evolution, 32(10), 2665-2674. |
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Valverde, G., Zhou, H., Lippold, S., de Filippo, C., Tang, K., Herráez, D. L., Li, J., & Stoneking, M. (2015). A novel candidate region for genetic adaptation to high altitude in Andean populations. PLoS One, 10(5): e0125444. |
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Macholdt, E., Slatkin, M., Pakendorf, B., & Stoneking, M. (2015). New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa. American Journal of Physical Anthropology, 156(4), 661-664. |
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Pugach, I., & Stoneking, M. (2015). Genome-wide insights into the genetic history of human populations. Investigative Genetics, 6: 6. |
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Hughes, D. A., Kircher, M., He, Z., Guo, S., Fairbrother, G. L., Moreno, C. S., Khaitovich, P., & Stoneking, M. (2015). Evaluating intra- and inter-individual variation in the human placental transcriptome. Genome Biology, 16: 54. |
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van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., van Dijk, F., Willemsen, G., de Geus, E. J., Milaneschi, Y., Penninx, B. W., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., de Craen, A. J., Uh, H.-W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., The Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Jukema, J. W., van der Harst, P., Sijbrands, E. J., Hottenga, J.-J., Uitterlinden, A. G., Swertz, M. A., van Ommen, G.-J.-B., de Bakker, P. I., Slagboom, P. E., Boomsma, D. I., Wijmenga, C., & van Duijn, C. M. (2015). Genome of the Netherlands population - specific imputations identify an ABCA6 variant associated with cholesterol levels. Nature Communications, 6: 6065. |
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Li, M., Schröder, R., Ni, S., Madea, B., & Stoneking, M. (2015). Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations. Proceedings of the National Academy of Sciences of the United States of America, 112(8), 2491-2496. |
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Savage, P. E., Matsumae, H., Oota, H., Stoneking, M., Currie, T. E., Tajima, A., Gillan, M., & Brown, S. (2015). How 'circumpolar' is Ainu music? Musical and genetic perspectives on the history of the Japanese archipelago. Ethnomusicology Forum, 24(3), 443-467. |
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van Leeuwen, E. M., Kanterakis, A., Deelen, P., Kattenberg, M. V., The Genome the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Slagboom, P. E., de Bakker, P. I., Wijmenga, C., Swertz, M. A., Boomsma, D. I., van Duijn, C. M., Karrsen, L. C., & Hottenga, J. J. (2015). Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols, 10(9), 1285-1296. |
2014
Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One, 9(6): e9911. |
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Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics, 94(5), 721-733. |
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Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging, 6(6), 454-467. |
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Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology, 24(8), 875-879. |
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Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics, 94(3), 426-436. |
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Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology, 153(3), 435-448. |
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Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences of the United States of America, 111(7), 2632 -2637. |
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Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics, 22(2), 228-237. |
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Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2014). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences, 281(1774): 20132072. |
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Deelen, P., Menelaou, A., van Leeuwen, E. M., Kanterakis, A., van Dijk, F., Medina-Gomez, C., Francioli, L. C., Hottenga, J. J., Karssen, L. C., Estrada, K., Kreiner-Møller, E., Rivadeneira, F., van Setten, J., Gutierrez-Achury, J., Westra, H.-J., Franke, L., van Enckevort, D., Dijkstra, M., Byelas, H., van Duijn, C. M., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, de Bakker, P. I. W., Wijmenga, C., & Swertz, M. A. (2014). Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Human Genetics, 22(11), 1321-1326. |
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Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development, 29, 9-14. |
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Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics, 10(2): e1004128. |
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Francioli, L. C., Menelaou, A., Pulit, S. L., van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., van Leeuwen, E. M., van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E.-W., Kattenberg, M., Dijkstra, M., Byelas, H., van Setten, J., van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marschall, T., Schönhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., van Enckevort, D., Mei, H., Koval, V., Moed, M. H., van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekman, M., de Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Study, L. C., Platteel, M., Veldink, J. H., van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., den Dunnen, J. T., Stoneking, M., de Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Pe'er, I., Slagboom, P. E., van Duijn, C. M., Boomsma, D. I., van Ommen, G.-J.-B., de Bakker, P. I. W., Swertz, M. A., Wijmenga, C., & Genome of the Netherlands Consortium, The (2014). Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nature Genetics, 46(8), 818-825. |
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Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution, 75, 143-152. |
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Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology, 14: 190. |
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Li, J., Quinque, D., Horz, H.-P., Li, M., Rzhetskaya, M., Raff, J. A., Hayes, M. G., & Stoneking, M. (2014). Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiology, 14: 316. |
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Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics, 5: 13. |
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Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications, 5: 4689. |
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Malaspinas, A.-S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y., Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D., & Willerslev, E. (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology, 24(21), R1035-R1037. |
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Oven, M. v., Brauer, S., Choi, Y., Ensing, J., Schiefenhövel, W., Stoneking, M., & Kayser, M. (2014). Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea. European journal of human genetics, 22, 1393-1403. |
2013
Grossmann, T., Vaish, A., Franz, J., Schroeder, R., Stoneking, M., & Friederici, A. D. (2013). Emotional voice processing: Investigating the role of genetic variation in the serotonin transporter across development. PLoS One, 8(7): e68377. |
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Barbieri, C., Vicente, M., Rocha, J., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013). Ancient substructure in early mtDNA lineages of southern Africa. American Journal of Human Genetics, 92, 285-292. |
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Duggan, A. T., & Stoneking, M. (2013). A highly unstable recent mutation in human mtDNA. American Journal of Human Genetics, 92(2), 279-284. |
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Pugach, I., Delfin, F., Gunnarsdóttir, E., Kayser, M., & Stoneking, M. (2013). Genome-wide data substantiate Holocene gene flow from India to Australia. Proceedings of the National Academy of Sciences of the United States of America, 110(5), 1803-1808. |
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Li, J., Nasidze, I., Quinque, D., Li, M., Horz, H.-P., Andre, C., Garriga, R. M., Halbwax, M., Fischer, A., & Stoneking, M. (2013). The saliva microbiome of Pan and Homo. BMC Microbiology, 13: 204. |
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Pugach, I., & Stoneking, M. (2013). Reply to Price and Bird: No inconsistency between the date of gene flow from India and the Australian archaeological record. Proceedings of the National Academy of Sciences of the United States of America, 110(32): E2949. |
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Stoneking, M. (2013). Mitochondrial genome: Evolution. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley. |
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Stoneking, M., & Harvati, K. (2013). Early Old World migrations of Homo sapiens: human biology. In The Encyclopedia of Global Human Migration, P. I. Hoboken, NJ: Wiley-Backwell. |
2012
Theunert, C., Tang, K., Lachmann, M., Hu, S., & Stoneking, M. (2012). Inferring the history of population size change from genome-wide SNP data. Molecular Biology and Evolution, 29(2), 3653-3667. |
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Jinam, T. A., Hong, L.-C., Phipps, M. E., Stoneking, M., Ameen, M., Edo, J., HUGO Pan-Asian SNP Consortium, & Saitou, N. (2012). Evolutionary history of continental South East Asians: "Early Train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Molecular Biology and Evolution, 29(11), 3513-3527. |
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Stoneking, M. (2012). Genetic evidence concerning the origins and dispersals of modern humans. In M. H. Crawford, & B. C. Campbell ( |
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Pickrell, J. K., Patterson, N., Berthold, F., Barbieri, C., Gerlach, L., Gueldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., Lipson, M., Loh, P.-R., Lachance, J., Mountain, J., Bustamante, C. D., Berger, B., Tishkoff, S. A., Henn, B. M., Stoneking, M., Reich, D., & Pakendorf, B. (2012). The genetic prehistory of southern Africa. Nature Communications, 3: 1143. |
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Xu, S., & Stoneking, M. (2012). Reply to Denham and Donohue: Asian-Papuan genetic admixture is in excellent agreement with Austronesian dispersal in eastern Indonesia. Proceedings of the National Academy of Sciences of the United States of America, 109(39): E2578. |
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de Filippo, C., Bostoen, K., Stoneking, M., & Pakendorf, B. (2012). Bringing together linguistic and genetic evidence to test the Bantu expansion. Proceedings of the Royal Society B: Biological Sciences, 279(1741), 3256-3263. |
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Ballantyne, K. N., van Oven, M., Ralf, A., Stoneking, M., Mitchell, R. J., van Oorschot, R. A., & Kayser, M. (2012). MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania. Forensic Science International: Genetics, 6(4), 425-436. |
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Quillen, E. E., Bauchet, M., Bigham, A. W., Delgado-Burbano, M. E., Faust, F. X., Klimentidis, Y. C., Mao, X., Stoneking, M., & Shriver, M. D. (2012). OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans. Human Genetics, 131(7), 1073-1080. |
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Li, M., & Stoneking, M. (2012). A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology, 13(5): R34. |
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Kenny, E. E., Timpson, N. J., Sikora, M., Yee, M.-C., Moreno-Estrada, A., Eng, C., Huntsman, S., Burchard, E. G., Stoneking, M., Bustamante, C. D., & Myles, S. (2012). Melanesian blond hair is caused by an amino acid change in TYRP1. Science, 336(6081), 554-554. |
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Li, J., Menard, V., Benish, R. L., Jurevic, R. J., Guillemette, C., Stoneking, M., Zimmerman, P. A., & Mehlotra, R. K. (2012). Worldwide variation in human drug-metabolism enzyme genes CYP2B6 and UGT2B7: implications for HIV/AIDS treatment. Pharmacogenomics, 13(5), 555-570. |
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Xu, S., Pugach, I., Stoneking, M., Kayser, M., Jina, L., & The HUGO Pan-Asian SNP Consortium (2012). Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proceedings of the National Academy of Sciences of the United States of America, 109(12), 4574-4579. |
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Delfin, F., Myles, S., Choi, Y., Hughes, D., Illek, R., van Oven, M., Pakendorf, B., Kayser, M., & Stoneking, M. (2012). Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands. Molecular Biology and Evolution, 29(2), 545-564. |
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Li, M., Schröder, R., Ko, A.-M.-S., & Stoneking, M. (2012). Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs. Nucleic Acids Research, 40(18): e137. |
2011
de Filippo, C., Barbieri, C., Whitten, M., Mpoloka, S. W., Gunnarsdóttir, E. D., Bostoen, K., Nyambe, T., Beyer, K., Schreiber, H., Knijff, P. d., Luiselli, D., Stoneking, M., & Pakendorf, B. (2011). Y-chromosomal variation in sub-saharan Africa: Insights into the history of Niger-Congo groups. Molecular Biology and Evolution, 28(3): msq312v1, pp. 1255-1269. |
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Delfin, F., Salvador, J. M., Calacal, G. C., Perdigon, H. B., Tabbada, K. A., Villamor, L. P., Halos, S. C., Gunnarsdóttir, E., Myles, S., Hughes, D. A., Xu, S., Jin, L., Lao, O., Kayser, M., Hurles, M. E., Stoneking, M., & Ungria, M. C. A. d. (2011). The Y-chromosome landscape of the Philippines: extensive heterogeneity and varying genetic affinities of Negrito and non-Negrito groups. European Journal of Human Genetics, 19(2), 224-230. |
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Gross, A., Tönjes, A., Kovacs, P., Veeramah, K. R., Ahnert, P., Roshyara, N. R., Gieger, C., Rueckert, I.-M., Loeffler, M., Stoneking, M., Wichmann, H.-E., Novembre, J., Stumvoll, M., & Scholz, M. (2011). Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays. BMC Genetics, 12: 67. |
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Grossmann, T., Johnson, M. H., Vaish, A., Hughes, D. A., Quinque, D., Stoneking, M., & Friederici, A. D. (2011). Genetic and neural dissociation of individual responses to emotional expressions in human infants. Developmental Cognitive Neuroscience, 1(1), 57-66. |
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Gunnarsdóttir, E. D., Li, M., Bauchet, M., Finstermeier, K., & Stoneking, M. (2011). High-throughput sequencing of complete human mtDNA genomes from the Philippines. Genome Research, 21(1), 1-11. |
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Gunnarsdóttir, E. D., Nandineni, M. R., Li, M., Myles, S., Gil, D., Pakendorf, B., & Stoneking, M. (2011). Larger mitochondrial DNA than Y-chromosome differences between matrilocal and patrilocal groups from Sumatra. Nature Communications, 2: 228. |
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Li, J., Zhang, L., Zhou, H., Stoneking, M., & Tang, K. (2011). Global patterns of genetic diversity and signals of natural selection for human ADME genes. Human Molecular Genetics, 20(3), 528-540. |
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Myles, S., Lea, R. A., Ohashi, J., Chambers, G. K., Weiss, J. G., Hardouin, E., Engelken, J., Macartney-Coxson, D. P., Eccles, D. A., Naka, I., Kimura, R., Inaoka, T., Matsumura, Y., & Stoneking, M. (2011). Testing the thrifty gene hypothesis: the Gly482Ser variant in PPARGC1A is associated with BMI in Tongans. BMC Medical Genetics, 12(1): 10, pp. 1-7. |
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Nasidze, I., & Stoneking, M. (2011). Microbiome diversity in human saliva. In F. J. d. Bruijn ( |
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Nasidze, I., Li, J., Schroeder, R., Creasey, J. L., Li, M., & Stoneking, M. (2011). High diversity of the saliva microbiome in Batwa pygmies. PLoS ONE, 6(8): e23352. |
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Oota, H., & Stoneking, M. (2011). Effect of human migration on genome diversity in East Asia. In Y. Takezawa ( |
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Pugach, I., Matveyev, R., Wollstein, A., Kayser, M., & Stoneking, M. (2011). Dating the age of admixture via wavelet transform analysis of genome-wide data. Genome Biology, 12(2): R19, pp. 1-18. |
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Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A.-M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., Saitou, N., Wollstein, A., Kayser, M., Pääbo, S., & Stoneking, M. (2011). Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. The American Journal of Human Genetics, 89(4), 516-528. |
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Schönberg, A., Theunert, C., Li, M., Stoneking, M., & Nasidze, I. (2011). High-throughput sequencing of complete human mtDNA genomes from the Caucasus and West Asia: High diversity and demographic inferences. European Journal of Human Genetics, 19(9), 988-994. |
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Stoneking, M., & Krause, J. (2011). Learning about human population history from ancient and modern genomes. Nature Reviews Genetics, 12(9), 603-614. |
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Stoneking, M.(2011). Was wir von Spucke lernen können: Diversität im Mikrobiom des menschlichen Speichels. Retrieved from https://www.mpg.de/1262166/Mikrobiom_Speichel?c=1070738. |
2010
Athanasiadis, G., Esteban, E., Gayà-Vidal, M., Dugoujon, J.-M., Moschonas, N., Chaabani, H., Bissar-Tadmouri, N., Harich, N., Stoneking, M., & Moral, P. (2010). Different evolutionary histories of the coagulation factor VII gene in human populations? Annals of Human Genetics, 74(1), 34-45. |
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Athanasiadis, G., González-Pérez, E., Esteban, E., Dugoujon, J.-M., Stoneking, M., & Moral, P. (2010). The Mediterranean Sea as a barrier to gene flow: Evidence from variation in and around the F7 and F12 genomic regions. BMC Evolutionary Biology, 10: 84. |
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de Filippo, C., Heyn, P., Barham, L., Stoneking, M., & Pakendorf, B. (2010). Genetic perspectives on forager-farmer interaction in the Luangwa Valley of Zambia. American Journal of Physical Anthropology, 141(3), 382-394. |
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Li, M., Schönberg, A., Schaefer, M., Schroeder, R., Nasidze, I., & Stoneking, M. (2010). Detecting heteroplasmy from high-throughput sequencing of complete human mitochondrial DNA genomes. The American Journal of Human Genetics, 87(2), 237-249. |
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Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060. |
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Stoneking, M., & Delfin, F. S. (2010). The human genetic history of East Asia: Weaving a complex tapestry. Current Biology, 20(4), R188-R193. |
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Wollstein, A., Lao, O., Becker, C., Brauer, S., Trent, R. J., Nürnberg, P., Stoneking, M., & Kayser, M. (2010). Demographic history of Oceania inferred from genome-wide data. Current Biology, 20, 1983-1992. |
2009
Balaresque, P., Parkin, E. J., Roewer, L., Carvalho-Silva, D. R., Mitchell, R. J., Oorschot, R. A. H. v., Henke, J., Stoneking, M., Nasidze, I., Wetton, J., Knijff, P. d., Tyler-Smith, C., & Jobling, M. A. (2009). Genomic complexity of the Y-STR DYS19: inversions, deletions and founder lineages carrying duplications. International Journal of Legal Medicine, 123(1), 15-23. |
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Hillmer, A. M., Freudenberg, J., Myles, S., Herms, S., Tang, K., Hughes, D. A., Brockschmidt, F. F., Ruan, Y., Stoneking, M., & Nöthen, M. M. (2009). Recent positive selection of a human androgen receptor/ectodysplasin A2 receptor haplotype and its relationship to male pattern baldness. Human Genetics, 126(2), 223-232. |
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Hughes, D. A., Hinney, A., Brumm, H., Wermter, A.-K., Biebermann, H., Hebebrand, J., & Stoneking, M. (2009). Increased constraints on MC4R during primate and human evolution. Human Genetics, 124(6), 633-647. |
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Hughes, D. A., Jastroch, M., Stoneking, M., & Klingenspor, M. (2009). Molecular evolution of UCP1 and the evolutionary history of mammalian non-shivering thermogenesis. BMC Evolutionary Biology, 9: 4. |
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López Herráez, D., Bauchet, M., Tang, K., Theunert, C., Pugach, I., Li, J., Nandineni, M. R., Gross, A., Scholz, M., & Stoneking, M. (2009). Genetic variation and recent positive selection in worldwide human populations: Evidence from nearly 1 million SNPs. PLoS ONE, 4(11): e7888. |
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Mona, S., Grunz, K. E., Brauer, S., Pakendorf, B., Castrì, L., Sudoyo, H., Marzuki, S., Barnes, R. H., Schmidtke, J., Stoneking, M., & Kayser, M. (2009). Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis. Molecular Biology and Evolution, 26(8), 1865-1877. |
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Moreno-Estrada, A., Tang, K., Sikora, M., Marquès-Bonet, T., Casals, F., Navarro, A., Calafell, F., Bertranpetit, J., Stoneking, M., & Bosch, E. (2009). Interrogating 11 fast-evolving genes for signatures of recent positive selection in worldwide human populations. Molecular Biology and Evolution, 26(10), 2285-2297. |
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Myles, S., Stoneking, M., & Timpson, N. (2009). An assessment of the portability of ancestry informative markers between human populations. BMC Medical Genomics, 2: 45. |
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Nasidze, I., Li, J., Quinque, D., Tang, K., & Stoneking, M. (2009). Global diversity in the human salivary microbiome. Genome Research, 19(4), 636-643. |
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Nasidze, I., Quinque, D., Li, J., Li, M., Tang, K., & Stoneking, M. (2009). Comparative analysis of human saliva microbiome diversity by barcoded pyrosequencing and cloning approaches. Analytical Biochemistry, 391(1), 64-68. |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., Asadova, P., Zhukova, O., & Stoneking, M. (2009). MtDNA and Y-chromosome variation in the Talysh of Iran and Azerbaijan. American Journal of Physical Anthropology, 138(1), 82-89. |
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Roewer, L., Willuweit, S., Stoneking, M., & Nasidze, I. (2009). A Y-STR database of Iranian and Azerbaijanian minority populations. Forensic Science International: Genetics, 4(1), e53-e55. |
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Ryan, A. W., Hughes, D. A., Tang, K., Kelleher, D. P., Ryan, T., McManus, R., & Stoneking, M. (2009). Natural selection and the molecular basis of electrophoretic variation at the coagulation F13B locus. European Journal of Human Genetics, 17(2), 219-227. |
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Stoneking, M. (2009). Humans as second orangutans: sense or nonsense? BioEssays, 31(10), 1010-1012. |
2008
Balaresque, P., Bowden, G. R., Parkin, E. J., Omran, G. A., Heyer, E., Quintana-Murci, L., Roewer, L., Stoneking, M., Nasidze, I., Carvalho-Silva, D. R., Tyler-Smith, C., de Knijff, P., & Jobling, M. A. (2008). Dynamic nature of the proximal AZFc region of the human Y chromosome: Multiple independent deletion and duplication events revealed by microsatellite analysis. Human Mutation, 29(10), 1171-1180. |
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Bryk, J., Hardouin, E., Pugach, I., Hughes, D. A., Strotmann, R., Stoneking, M., & Myles, S. (2008). Positive selection in East Asians for an EDAR allele that enhances NF-kappaB activation. PLoS ONE, 3(5): e2209. |
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Fechner, A., Quinque, D., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Willuweit, S., Zhukova, O., Roewer, L., Stoneking, M., & Nasidze, I. (2008). Boundaries and clines in the West Eurasian Y-chromosome landscape: Insights from the European part of Russia. American Journal of Physical Anthropology, 137(1), 41-47. |
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Güldemann, T., & Stoneking, M. (2008). A historical appraisal of clicks: A linguistic and genetic population perspective. Annual Review of Anthropology, 37, 93-109. |
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Herráez, D. L., & Stoneking, M. (2008). High fractions of exogenous DNA in human buccal samples reduce the quality of large-scale genotyping. Analytical Biochemistry, 383(2), 329-331. |
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Hughes, D. A., Tang, K., Strotmann, R., Schöneberg, T., Prenen, J., Nilius, B., & Stoneking, M. (2008). Parallel selection on TRPV6 in human populations. PLoS One, 3(3): e1686. |
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Kayser, M., Choi, Y., Oven, M. v., Mona, S., Brauer, S., Trent, R. J., Suarkia, D., Schiefenhövel, W., & Stoneking, M. (2008). The impact of the Austronesian expansion: Evidence from mtDNA and Y chromosome diversity in the Admiralty Islands of Melanesia. Molecular Biology and Evolution, 25(7), 1362-1374. |
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Kayser, M., Lao, O., & Stoneking, M. (2008). Reply to Hedrick: East Asian and Melanesian ancestry in Polynesians. American Journal of Human Genetics, 83(1), 140-142. |
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Kayser, M., Lao, O., Saar, K., Brauer, S., Wang, X., Nürnberg, P., Trent, R. J., & Stoneking, M. (2008). Genome-wide analysis indicates more Asian than Melanesian ancestry of Polynesians. American Journal of Human Genetics, 82(1), 194-198. |
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Mehlotra, R. K., Mattera, G., Bockarie, M. J., Maguire, J. D., Baird, J. K., Sharma, Y. D., Alifrangis, M., Dorsey, G., Rosenthal, P. J., Fryauff, D. J., Kazura, J. W., Stoneking, M., & Zimmerman, P. A. (2008). Discordant patterns of genetic variation at two chloroquine resistance loci in worldwide populations of the malaria parasite Plasmodium falciparum. Antimicrobial Agents and Chemotherapy, 52(6), 2212-2222. |
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Myles, S., Davison, D., Barrett, J., Stoneking, M., & Timpson, N. (2008). Worldwide population differentiation at disease-associated SNPs. BMC Medical Genomics, 1: 22. |
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Myles, S., Tang, K., Somel, M., Green, R. E., Kelso, J., & Stoneking, M. (2008). Identification and analysis of genomic regions with large between-population differentiation in humans. Annals of Human Genetics, 72(1), 99-110. |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2008). Close genetic relationship between Semitic-speaking and Indo-European-speaking groups in Iran. Annals of Human Genetics, 72(2), 241-252. |
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Roewer, L., Willuweit, S., Krüger, C., Nagy, M., Rychkov, S., Morozowa, I., Naumova, O., Schneider, Y., Zhukova, O., Stoneking, M., & Nasidze, I. (2008). Analysis of Y chromosome STR haplotypes in the European part of Russia reveals high diversities but non-significant genetic distances between populations. International Journal of Legal Medicine, 122(3), 219-223. |
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Stoneking, M. (2008). Human origins - the molecular perspective. EMBO Reports, 9(Supplement 1), S46-S50. |
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Stoneking, M. (2008). Mitochondrial genome: Evolution. In Encyclopedia of Life Sciences (ELS). Chichester: Wiley. |
2007
Cordaux, R., Srikanta, D., Lee, J., Stoneking, M., & Batzer, M. A. (2007). In search of polymorphic alu insertions with restricted geographic distributions. Genomics, 90(1), 154-158. |
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DaRe, J. T., Mehlotra, R. K., Michon, P., Mueller, I., Reeder, J. C., Sharma, Y. D., Stoneking, M., & Zimmerman, P. A. (2007). Microsatellite polymorphism within pfcrt provides evidence of continuing evolution of chloroquine-resistant alleles in Papua New Guinea. Malaria Journal, 6: 34. |
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Kuch, M., Gröcke, D. R., Knyf, M. C., Gilbert, M. T. P., Younghusband, B., Young, T., Marshall, I., Willerslev, E., Stoneking, M., & Poinar, H. N. (2007). A preliminary analysis of the DNA and diet of the extinct Beothuk: A systematic approach to ancient human DNA. American Journal of Physical Anthropology, 132(4), 594-604. |
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Lalueza-Fox, C., Römpler, H., Caramelli, D., Stäubert, C., Catalano, G., Hughes, D. A., Rohland, N., Pilli, E., Longo, L., Condemi, S., de la Rasilla, M., Fortea, J., Rosas, A., Stoneking, M., Schöneberg, T., Bertranpetit, J., & Hofreiter, M. (2007). A melanocortin 1 receptor allele suggests varying pigmentation among Neanderthals. Science, 318(5855), 1453-1455. |
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Myles, S., Hradetzky, E., Engelken, J., Lao, O., Nürnberg, P., Trent, R. J., Wang, X., Kayser, M., & Stoneking, M. (2007). Identification of a candidate genetic variant for the high prevalence of type II diabetes in Polynesians. European Journal of Human Genetics, 15, 584-589. |
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Myles, S., Hughes, D., & Stoneking, M. (2007). Detecting local selection in human populations. In C. Santos, & M. Lima ( |
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Myles, S., Somel, M., Tang, K., Kelso, J., & Stoneking, M. (2007). Identifying genes underlying skin pigmentation differences among human populations. Human Genetics, 120(5), 613-621. |
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Nasidze, I., Quinque, D., Udina, I., Kunizheva, S., & Stoneking, M. (2007). The Gagauz, a linguistic enclave, are not a genetic isolate. Annals of Human Genetics, 71(3), 379-389. |
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Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., & Stoneking, M. (2007). Mating patterns amongst Siberian reindeer herders: Inferences from mtDNA and Y-chromosomal analyses. American Journal of Physical Anthropology, 133(3), 1013-1027. |
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Roewer, L., Krüger, C., Willuweit, S., Nagy, M., Rodig, H., Kokshunova, L., Rothämel, T., Kravchenko, S. A., Jobling, M. A., Stoneking, M., & Nasidze, I. (2007). Y-chromosomal STR haplotypes in Kalmyk population samples. Forensic Science International, 173(2-3), 204-209. |
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Rootsi, S., Zhivotovsky, L. A., Baldovic, M., Kayser, M., Kutuev, I. A., Khusainova, R., Bermisheva, M. A., Gubina, M., Fedorova, S. A., Ilumäe, A.-M., Khusnutdinova, E., Voevoda, M. I., Osipova, L. P., Stoneking, M., Lin, A. A., Ferak, V., Parik, J., Kivisild, T., Underhill, P. A., & Villems, R. (2007). A counter-clockwise northern route of the Y-chromosome haplogroup N from Southeast Asia towards Europe. European Journal of Human Genetics, 15(2), 204-211. |
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Stoneking, M., & Kayser, M. (2007). Genealogical markers: mtDNA and the Y-chromosome. In Michael P. Weiner, Stacey B. Gabriel, J. Claiborne Stephens ( |
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Stoneking, M., & Nasidze, I. (2007). Reply to Parson: The art of reading sequence electropherograms. Annals of Human Genetics, 71(2), 279-280. |
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Tang, K., Thornton, K. R., & Stoneking, M. (2007). A new approach for using genome scans to detect recent positive selection in the human genome. PLoS Biology, 5(7): e171. |
2006
Mehlotra, R. K., Stoneking, M., & Zimmerman, P. A. (2006). Paleoparasite populations from archived sera: Insights into chloroquine drug resistance in Papua New Guinea - Reply to Chan et al. Journal of Infectious Diseases, 194(7), 1024-1025. |
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Hammer, M. F., Karafet, H., Park, H.-S., Omoto, K., Harihara, S., Stoneking, M., & Horai, S. (2006). Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. Journal of Human Genetics, 51, 47-58. |
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Kayser, M., Brauer, S., Cordaux, R., Casto, A., Lao, O., Zhivotovsky, L. A., Moyse-Faurie, C., Rutledge, R., Schiefenhövel, W., Gil, D., Lin, A. A., Underhill, P. A., Oefner, P. J., Trent, R. J., & Stoneking, M. (2006). Melanesian and Asian origins of Polynesians: mtDNA and Y-chromosome gradients across the Pacific. Molecular Biology and Evolution, 23(11), 2234-2244. |
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Nasidze, I., Quinque, D., Rahmani, M., Alemohamad, S. A., & Stoneking, M. (2006). Concomitant replacement of language and mtDNA in South Caspian populations of Iran. Current Biology, 16(7), 668-673. |
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Pakendorf, B., Novgorodov, I. N., Osakovskij, V. L., Danilova, A. P., Protod´jakonov, A., & Stoneking, M. (2006). Investigating the effects of prehistoric migrations in Siberia: genetic variation and the origins of Yakuts. Human Genetics, 120(3), 334-353. |
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Quinque, D., Kittler, R., Kayser, M., Stoneking, M., & Nasidze, I. (2006). Evaluation of saliva as a source of human DNA for population and association studies. Analytical Biochemistry, 353(2), 272-277. |
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Stoneking, M. (2006). Genetic evidence for our recent African ancestry. In Soodyall, Himla ( |
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Stoneking, M. (2006). Investigating the health of our ancestors: Insights from the evolutionary genetic consequences of prehistoric diseases. In Bromage, Timothy ( |
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Stoneking, M., & Nasidze, I. (2006). The patient is not dead yet: Premature autopsy of an mtDNA data set. Annals Human Genetics, 70(3), 327-331. |
2005
Mehlotra, R. K., Mattera, G., Bhatia, K., Reeder, J. C., Stoneking, M., & Zimmerman, P. A. (2005). Insight into the early spread of chloroquine resistant Plasmodium falciparum infections in Papua New Guinea. Journal of Infectious Diseases, 192(12), 2174-2179. |
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Nasidze, I., Quinque, D., Dupanloup, I., Cordaux, R., Kokshunova, L., & Stoneking, M. (2005). Genetic evidence for the Mongolian ancestry of Kalmyks. American Journal of Physical Anthropology, 128(4), 846-854. |
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Stoneking, M., Pakendorf, B., & Oota, H. (2005). Authors' reply. PLoS Biol, 3(8): e270, pp. 1354-1355. |
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Nasidze, I., Quinque, D., Ozturk, M., Bendukidze, N., & Stoneking, M. (2005). MtDNA and Y-chromosome variation in Kurdish groups. Annals of Human Genetics, 69(4), 401-412. |
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Hamilton, G., Stoneking, M., & Excoffier, L. (2005). Molecular analysis reveals tighter social regulation of immigration in patrilocal populations than in matrilocal populations. Proceedings of the National Academy of Sciences of the United States of America, 102(21), 7476-7480. |
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Oota, H., Pakendorf, B., Weiss, G., von Haeseler, A., Pookajorn, S., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2005). Recent origin and cultural reversion of a hunter–gatherer group. PLoS Biology, 3(3): e71. |
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Pakendorf, B., & Stoneking, M. (2005). Mitochondrial DNA and human evolution. Annual Review of Genomics and Human Genetics, 6, 165-183. |
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Stoneking, M. (2005). Gene, Geographie und Sprache. In Günter Hauska ( |
2004
Erler, A., Stoneking, M., & Kayser, M. (2004). Development of Y-chromosomal microsatellite markers for non-human primates. Molecular Ecology, 13(10), 2921-2930. |
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Kasperaviciute, D., Kucinskas, V., & Stoneking, M. (2004). Y chromosome and mitochondrial DNA variation in Lithuanians. Annals of Human Genetics, 68(5), 438-452. |
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Cordaux, R., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2004). Y-STR haplotypes from eight south Indian groups based on five loci. Journal of Forensic Sciences, 49(4), 847-848. |
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Cordaux, R., Aunger, R., Bentley, G. R., Nasidze, I., Sirajuddin, S. M., & Stoneking, M. (2004). Independent origins of Indian caste and tribal paternal lineages. Current Biology, 14(3), 231-235. |
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Cordaux, R., Edwin, D., Vishwanathan, H., & Stoneking, M. (2004). Genetic evidence for the demic diffusion of agriculture to India. Science, 304(5674), 1125-1125. |
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Cordaux, R., Weiss, G., Saha, N., & Stoneking, M. (2004). The northeast Indian passageway: A barrier or corridor for human migrations? Molecular Biology and Evolution, 21(8), 1525-1533. |
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Hughes, D. A., Cordaux, R., & Stoneking, M. (2004). Humans. Current Biology, 14, R367-R369. |
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Kayser, M., Kittler, R., Erler, A., Hedman, M., Lee, A. C., Mohyuddin, A., Mehdi, S. Q., Rosser, Z. H., Stoneking, M., Jobling, M. A., Sajantila, A., & Tyler-Smith, C. (2004). A comprehensive survey of human Y-chromosomal microsatellites. American Journal of Human Genetics, 74(6), 1183-1197. |
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Nasidze, I., Ling, E. Y., Quinque, D., Dupanloup, I., Cordaux, R., Rychkov, S., Naumova, O., Zhukova, O., Sarraf-Zadegan, N., Naderi, G. A., Asgary, S., Sardas, S., Farhud, D. D., Sarkisian, T., Asadov, C., Kerimov, A., & Stoneking, M. (2004). Mitochondrial DNA and Y-chromosome variation in the Caucasus. Annals of Human Genetics, 68(3), 205-221. |
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Nasidze, I., Quinque, D., Dupanloup, I., Rychkov, S., Naumova, O., Zhukova, O., & Stoneking, M. (2004). Genetic evidence concerning the origins of South and North Ossetians. Annals of Human Genetics, 68(6), 588-599. |
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Vishwanathan, H., Deepa, E., Cordaux, R., Stoneking, M., Usha Rani, M. V., & Majumder, P. P. (2004). Genetic structure and affinities among tribal populations of southern India: a study of 24 autosomal DNA markers. Annals Human Genetics, 68(2), 128-138. |
2003
Stoneking, M. (2003). Widespread prehistoric human cannibalism: Easier to swallow? Trends in Ecology & Evolution, 18(10), 489-490. |
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Kittler, R., Kayser, M., & Stoneking, M. (2003). Molecular evolution of Pediculus humanus and the origin of clothing. Current Biology, 13(16), 1414-1417. |
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Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., Shen, P. D., Oefner, P. J., Tommaseo-Ponzetta, M., & Stoneking, M. (2003). Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea. American Journal of Human Genetics, 72(2), 281-302. |
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Cordaux, R., & Stoneking, M. (2003). South Asia: the Andamanese and the genetic evidence for an "early" human dispersal out of Africa. American Journal of Human Genetics, 72(6), 1586-1590. |
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Cordaux, R., Saha, N., Bentley, G. R., Aunger, A., Sirajuddin, S. M., & Stoneking, M. (2003). Mitochondrial DNA analysis reveals diverse histories of tribal populations of India. European Journal of Human Genetics, 11(3), 253-264. |
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Kayser, M., Brauer, S., & Stoneking, M. (2003). A genome scan to detect candidate regions influenced by local natural selection in human populations. Molecular Biology and Evolution, 20(6), 893-900. |
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Kayser, M., Brauer, S., Schädlich, H., Prinz, M., Batzer, M. A., Zimmerman, P. A., Boatin, B. A., & Stoneking, M. (2003). Y chromosome STR haplotypes and the genetic structure of U.S. populations of African, European, and Hispanic ancestry. Genome Research, 13, 624-634. |
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Kittler, R., Erler, A., Brauer, S., Stoneking, M., & Kayser, M. (2003). Apparent intra-chromosomal exchange on the human Y chromosome explained by population history. European Journal of Human Genetics, 11, 304-314. |
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Nasidze, I., Sarkisian, T., Kerimov, A., & Stoneking, M. (2003). Testing hypotheses of language replacement in the Caucasus: Evidence from the Y-chromosome. Human Genetics, 112(3), 255-261. |
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Nasidze, I., Schädlich, H., & Stoneking, M. (2003). Haplotypes from the Caucasus, Turkey and Iran for nine Y-STR loci. Forensic Science International, 137(1), 85-93. |
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Pakendorf, B., Wiebe, V., Tarskaia, L. A., Spitsyn, V. A., Soodyall, H., Rodewald, A., & Stoneking, M. (2003). Mitochondrial DNA evidence for admixed origins of central Siberian populations. American Journal of Physical Anthropology, 120(3), 211-224. |
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Stoneking, M. (2003). Mitochondrial genome: Evolution. In David N. Cooper ( |
2002
Oota, H., Kitano, T., Jin, F., Yuasa, I., Wang, L., Ueda, S., Saitou, N., & Stoneking, M. (2002). Extreme mtDNA homogeneity in continental Asian populations. American Journal of Physical Anthropology, 118(2), 146-153. |
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Kayser, M., Brauer, S., Willuweit, S., Schädlich, H., Batzer, M. A., Zawacki, J., Prinz, M., Roewer, L., & Stoneking, M. (2002). Online Y-chromosomal short tandem repeat haplotype reference database (YHRD) for US populations. Journal of Forensic Sciences, 47(3), 513-519. |
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Romualdi, C., Balding, D., Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Stoneking, M., Batzer, M. A., & Barbujani, G. (2002). Patterns of human diversity, within and among continents, inferred from biallelic DNA polymorphisms. Genome Research, 12(4), 602-612. |
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Pakendorf, B., Morar, B., Tarskaia, L. A., Kayser, M., Soodyall, H., Rodewald, A., & Stoneking, M. (2002). Y-chromosomal evidence for a strong reduction in male population size of Yakuts. Human Genetics, 110(2), 198-200. |
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Kittler, R., Stoneking, M., & Kayser, M. (2002). A whole genome amplification method to generate long fragments from low quantities of genomic DNA. Analytical Biochemistry, 300(2), 237-244. |
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Nasidze, I., & Stoneking, M. (2002). Genetic variation among human populations from the Caucasus. In Shumny, V. K.; Kolchanov, N. A.; Fedotov, A. M. ( |
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Presser, J., Deverell, A., Redd, A., & Stoneking, M. (2002). Tasmanian aborigines and DNA. Papers and Proceedings of the the Royal Society of Tasmania, 136, 35-38. |
2001
Begovich, A. B., Moonsamy, P. V., Mack, S. J., Barcellos, L. F., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Konenkov, V. I., Sartakova, M. L., Titanji, V. P. K., Rickards, O., & Klitz, W. (2001). Genetic variability and linkage disequilibrium within the DP region: Analysis of 15 different populations. Tissue Antigens, 57(5), 424-439. |
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Donnelly, P., Foley, R., Stoneking, M., Deininger, P. L., & Batzer, M. A. (2001). Alu insertion polymorphisms in humans: A review. In Genes, Fossils and Behaviour (pp. 111-121). Amsterdam: IOS Press. |
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Justice, C. M., Den, Z., Nguyen, S. V., Stoneking, M., Deininger, P. L., Batzer, M. A., & Keats, B. J. B. (2001). Phylogenetic analysis of the Friedreich ataxia GAA trinucleotide repeat. Journal of Molecular Evolution, 52(3), 232-238. |
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Kayser, M., Brauer, S., Weiss, G., Schiefenhövel, W., Underhill, P. A., & Stoneking, M. (2001). Independent histories of human Y chromosomes from Melanesia and Australia. American Journal of Human Genetics, 68(1), 173-190. |
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Melton, T., Clifford, S., Kayser, M., Nasidze, I., Batzer, M. A., & Stoneking, M. (2001). Diversity and heterogeneity in mitochondrial DNA of North American populations. Journal of Forensic Sciences, 46(1), 46-52. |
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Nasidze, I., & Stoneking, M. (2001). Mitochondrial DNA variation and language replacements in the Caucasus. Proceedings of the Royal Society of London B, 268(1472), 1197-1206. |
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Nasidze, I., Risch, G. M., Robichaux, M., Sherry, S. T., Batzer, M. A., & Stoneking, M. (2001). Alu insertion polymorphisms and the genetic structure of human populations from the Caucasus. European Journal of Human Genetics, 9, 267-272. |
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Oota, H., Settheetham-Ishida, W., Tiwawech, D., Ishida, T., & Stoneking, M. (2001). Human mtDNA and Y-chromosome variation is correlated with matrilocal vs. patrilocal residence. Nature Genetics, 29, 20-21. |
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Stone, A. C., Starrs, J. E., & Stoneking, M. (2001). Mitochondrial DNA analysis of the presumptive remains of Jesse James. Journal of Forensic Sciences, 46(1), 173-176. |
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Stoneking, M. (2001). Single nucleotide polymorphisms: From the evolutionary past.. Nature, 409, 821-822. |
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Tishkoff, S. A., Varkonyi, R., Cahinhinan, N., Abbes, S., Argyropoulos, G., Destro-Bisol, G., Drousiotou, A., Dangerfield, B., Lefranc, G., Loiselet, J., Piro, A., Stoneking, M., Tagarelli, A., Tagarelli, G., Touma, E. H., Williams, S. M., & Clark, A. G. (2001). Haplotype diversity and linkage disequilibrium at human G6PD recent origin of alleles that confer malarial resistance. Science, 293(5529), 455-462. |
2000
Di Benedetto, G., Nasidze, I., Stenico, M., Nigro, L., Krings, M., Lanzinger, M., Vigilant, L., Stoneking, M., Pääbo, S., & Barbujani, G. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. European Journal of Human Genetics, 8(9), 669-677. |
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Begovich, A. B., Klitz, W., Steiner, L. L., Grams, S., Suraj-Baker, V., Hollenbach, J., Trachtenberg, E., Louie, L., Zimmerman, P. A., Hill, A. V. S., Stoneking, M., Sasazuki, T., Rickards, O., Titanji, V. P. K., Konenkov, V. I., & Sartakova, M. L. (2000). HLA-DQ haplotypes in 15 different populations. In M. Kasahara ( |
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Clark, V. J., Sivendren, S., Saha, N., Bentley, G. R., Aunger, R., Sirajuddin, S. M., & Stoneking, M. (2000). The 9-bp deletion between the mitochondrial lysine tRNA and COII genes in tribal populations of India. Human Biology, 72(2), 273-285. |
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Comas, D., Calafell, F., Benchemsi, N., Helal, A., Lefranc, G., Stoneking, M., Batzer, M. A., Bertranpetit, J., & Sajantila, A. (2000). Alu insertion polymorphisms in Northwest Africa and the Iberian Peninsula: Evidence for a strong genetic boundary through the Gibraltar Straits. Human Genetics, 107(4), 312-319. |
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Kayser, M., Brauer, S., Weiss, G., Underhill, P. A., Roewer, L., Schiefenhövel, W., & Stoneking, M. (2000). Melanesian origin of Polynesian Y chromosomes. Current Biology, 10, 1237-1246. |
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Kayser, M., Roewer, L., Hedman, M., Henke, L., Henke, J., Brauer, S., Kruger, C., Krawczak, M., Nagy, M., Dobosz, T., Szibor, R., de Knijff, P., Stoneking, M., & Sajantila, A. (2000). Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome revealed by direct observation in father/son pairs. American Journal of Human Genetics, 66(5), 1580-1588. |
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Kumar, S., Hedrick, P. W., Dowling, T., & Stoneking, M. (2000). Questioning evidence for recombination in human mitochondrial DNA. Science, 288(5473), 1931. |
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Kumar, S., Nasidze, I., Walimbe, S. R., & Stoneking, M. (2000). Brief communication: Discouraging prospects for ancient DNA from India. American Journal of Physical Anthropology, 113(1), 129-133. |
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Mack, S. J., Bugawan, T. L., Moonsamy, P. V., Erlich, J. A., Trachtenberg, E., Paik, Y. K., Begovich, A. B., Saha, N., Beck, H. P., Stoneking, M., & Erlich, H. A. (2000). Evolution of Pacific/Asian populations inferred from HLA class II allele frequency distributions. Tissue Antigens, 55(5), 383-400. |
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Sheen, F., Sherry, S. T., Risch, G. M., Robichaux, M., Nasidze, I., Stoneking, M., Batzer, M. A., & Swergold, G. D. (2000). Reading between the LINEs: Human genomic variation induced by LINE-1 retrotransposition. Genome Research, 10(10), 1496-1508. |
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Stoneking, M. (2000). Hypervariable sites in the mtDNA control region are mutational hotspots. American Journal of Human Genetics, 67(4), 1029-1032. |
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Tishkoff, S. A., Pakstis, A. J., Stoneking, M., Kidd, J. R., Destro-Bisol, G., Sajantila, A., Deinard, A. S., Sirugo, G., Jenkins, T., Kidd, K. K., & Clark, A. G. (2000). Short tandem-repeat polymorphism/Alu haplotype variation at the PLAT locus: Implications for modern human origins. American Journal of Human Genetics, 67(4), 901-925. |
1999
Krings, M., Salem, A.-e.-H., Bauer, K., Geisert, H., Malek, A. K., Chaix, L., Simon, C., Welsby, D., Di Rienzo, A., Utermann, G., Sajantila, A., Pääbo, S., & Stoneking, M. (1999). mtDNA analysis of Nile River Valley populations: A genetic corridor or a barrier to migration? American Journal of Human Genetics, 64(4), 1166-1176. |
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Bugawan, T. L., Mack, S. J., Stoneking, M., Saha, N., Beck, H. P., & Erlich, H. A. (1999). HLA class I allele distributions in six Pacific/Asian populations: evidence of selection at the HLA-A locus. Tissue Antigens, 53, 311-319. |
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Deininger, P. L., Sherry, S. T., Risch, G. M., Donaldson, C., Robichaux, M., Soodyall, H., Jenkins, T., Sheen, S., Swergold, G. D., Stoneking, M., & Batzer, M. A. (1999). Interspersed repeat insertion polymorphisms for studies of human molecular anthropology. In Surinder S. Papiha, Ranjan Deka, and Ranajit Chakraborty ( |
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Nasidze, I., & Stoneking, M. (1999). Construction of larger-size sequencing templates from degraded DNA. BioTechniques, 27, 480-488. |
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Redd, A. J., & Stoneking, M. (1999). Peopling of Sahul: mitochondrial DNA variation in Australian aboriginal and Papua New Guinean populations. American Journal of Human Genetics, 65, 808-828. |
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Stone, A. C., & Stoneking, M. (1999). Analysis of ancient DNA from a prehistoric Amerindian cemetery. Philosophical Transactions of the Royal Society of London B, 354, 153-159. |
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Szabó, Z., Levi-Minzi, S. A., Christiano, A. M., Struminger, C., Stoneking, M., Batzer, M. A., & Boyd, C. D. (1999). Sequential Loss of Two Neighboring Exons of the Tropoelastin Gene During Primate Evolution. Journal of Molecular Evolution, 49(5), 664-671. |
1998
Jazin, E., Soodyall, H., Jalonen, P., Lindholm, E., Stoneking, M., & Gyllenstein, U. (1998). Mitochondrial mutation rate revisited: hot spots and polymorphism. Nature Genetics, 18(2), 109-110. |
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Melton, T., Clifford, S., Martinson, J., Batzer, M. A., & Stoneking, M. (1998). Genetic evidence for the proto-Austronesian homeland in Asia: mtDNA and nuclear DNA variation in Taiwanese aboriginal tribes. American Journal of Human Genetics, 63(6), 1807-1823. |
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Novick, G. E., Novick, C. C., Yunis, J., Yunis, E., Mayolo, P. A., Scheer, W. D., Deininger, P. L., Stoneking, M., York, D., Batzer, M. A., & Herrera, R. J. (1998). Polymorphic Alu insertions and the Asian origin of native American populations. Human Biology, 70(1), 23-39. Retrieved from https://www.jstor.org/stable/41465617. |
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Stone, A. C., & Stoneking, M. (1998). mtDNA analysis of a prehistoric Oneota population: implications for the peopling of the New World. American Journal of Human Genetics, 62(5), 1153-1170. |
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Stoneking, M. (1998). Women on the move. Nature Genetics, 20(3), 219-220. |
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Zietkiewicz, E., Yotova, V., Jarnik, M., Korab-Laskowska, M., Kidd, K. K., Modiano, D., Scozzari, R., Stoneking, M., Tishkoff, S. A., Batzer, M. A., & Labuda, D. (1998). Genetic Structure of the Ancestral Population of Modern Humans. Journal of Molecular Evolution, 47(2), 146-155. |
1997
Zigtkiewicz, E., Yotova, V., Jarnik, M., Korab-Laskowska, M., Kídd, K. K., Modiano, D., Scozzari, R., Stoneking, M., Tishkoff, S., Batzer, M., & Labuda, D. (1997). Nuclear DNA diversity in worldwide distributed human populations. Gene, 205(1-2), 161-171. |
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Batzer, M. A., Sherry, S. T., Deininger, P. L., & Stoneking, M. (1997). Response: Alu repeats and human evolution. Journal of Molecular Evolution, 45(1), 7-8. |
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Krings, M., Stone, A. C., Schmitz, R. W., Krainitzki, H., Stoneking, M., & Pääbo, S. (1997). Neandertal DNA sequences and the origin of modern humans. Cell, 90(1), 19-30. |
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Melton, T., Ginther, C., Sensabaugh, G., Soodyall, G., & Stoneking, M. (1997). Extent of heterogeneity in mitochondrial DNA of sub-Saharan African populations. Journal of Forensic Sciences, 42(4), 582-592. |
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Melton, T., Wilson, M., Batzer, M. A., & Stoneking, M. (1997). Extent of heterogeneity in mitochondrial DNA of European populations. Journal of Forensic Sciences, 42(3), 437-446. |
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Sherry, S. T., Harpending, H. C., Batzer, M. A., & Stoneking, M. (1997). Alu Evolution in Human Populations: Using the Coalescent to Estimate Effective Population Size. Genetics, 147(4), 1977-1982. Retrieved from http://www.genetics.org/cgi/content/abstract/147/4/1977. |
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Soodyall, H., Jenkins, T., Mukherjee, A., Du Toit, E., Roberts, D. F., & Stoneking, M. (1997). The founding mitochondrial DNA lineages of Tristan da Cunha Islanders. American Journal of Physical Anthropology, 104(2), 157-166. |
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Stoneking, M. (1997). Multiplex DNA typing of short-tandem-repeat loci on the Y chromosome. Biological Chemistry, 378(8), 923-934. |
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Stoneking, M. (1997). Recent African origin of human mitochondrial DNA: review of the evidence and current status of the hypothesis. In Peter Donnelly, Simon Tavaré ( |
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Stoneking, M. (1997). The human genome project and molecular anthropology. Genome Research, 7(2), 1-13. |
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Stoneking, M., Fontius, J. J., Clifford, S. L., Soodyall, H., Arcot, S. S., Saha, N., Jenkins, T., Tahir, M. A., Deininger, P. L., & Batzer, M. A. (1997). Alu Insertion Polymorphisms and Human Evolution: Evidence for a Larger Population Size in Africa. Genome Research, 7(11), 1061-1071. |
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Zucman-Rossi, J., Batzer, M. A., Stoneking, M., Delattre, O., & Thomas, G. (1997). Interethnic polymorphism of EWS intron 6: genome plasticity mediated by Alu retroposition and recombination. Human Genetics, 99(3), 357-363. |
1996
Stoneking, M. and H. Soodyall. 1996. Human evolution and the mitochondrial genome. Current Opinion in Genetics and Development 6:731-736.
Erlich, H. A., T. F. Bergström, M. Stoneking, and U. Gyllensten. 1996. HLA sequence polymorphism and the origin of humans. Science 274:1552-1554.
Thomas, R., H. Zischler, S. Pääbo, and M. Stoneking. 1996. Novel mitochondrial DNA insertion polymorphism and its usefulness for human population studies. Human Biology 68:847-854.
Stone, A. C. and M. Stoneking. 1996. Genetic analyses of an 8000 year-old native American skeleton. Ancient Biomolecules 1:83-87.
Soodyall, H., T. Jenkins, R. Hewitt, A. Krause, and M. Stoneking. 1996. The peopling of Madagascar. In: Molecular Biology and Human Diversity, A. J. Boyce and C. G. N. Mascie-Taylor (eds.), Cambridge University Press, Cambridge, pp.156-170.
Melton, T. and M. Stoneking. 1996. Extent of heterogeneity in mitochondrial DNA of ethnic Asian populations. Journal of Forensic Sciences 41:591-602.
Stoneking, M. 1996. Mitochondrial DNA heteroplasmy: out of the closet. Biol. Chem. 377:603-604.
Stoneking, M. 1996. Mitochondrial DNA variation and human evolution. In: Human Genome Evolution, M. Jackson, T. Strachan, and G. Dover (eds.), BIOS Scientific Publishers, Oxford, pp. 263-281.
Bonatto, S. L., A. J. Redd, F. M. Salzano, and M. Stoneking. 1996. Lack of ancient Polynesian-Amerindian contact. American Journal of Human Genetics 59:253-255.
Knight, A., M. A. Batzer, M. Stoneking, H. K. Tiwari, W. D. Scheer, R. J. Herrera, and P. L. Deininger. 1996. DNA sequences of Alu elements indicate a recent replacement of the human autosomal genetic complement. Proceedings of the National Academy of Sciences USA 93:4360-4364.
Soodyall, H., L. Vigilant, A. V. Hill, M. Stoneking, and T. Jenkins. 1996. Mitochondrial DNA control region sequence variation suggests multiple independent origins of an "Asian-specific" 9-bp deletion in sub-Saharan Africans. American Journal of Human Genetics 58:595-608.
Nachman, M. W., W. M. Brown, M. Stoneking, and C. F. Aquadro. 1996. Non-neutral mitochondrial DNA variation in humans and chimpanzees. Genetics 142:953-963.
Batzer, M. A., S. S. Arcot, J. W. Phinney, M. Alegria-Hartman, D. H. Kass, S. M. Milligan, C. Kimpton, P. Gill, M. Hochmeister, P. A. Ioannou, R. J. Herrera, D. A. Boudreau, W. D. Scheer, B J. B. Keats, P. L. Deininger, and M. Stoneking. 1996. Genetic variation of recent Alu insertions in human populations. Journal of Molecular Evolution 42:22-29.
Bonnichsen, R., M. T. Beatty, M. D. Turner, and M. Stoneking. 1996. What can be learned from hair? A hair record from the Mammoth Meadow locus, southwestern Montana. In: Prehistoric Mongoloid Dispersals, T. Akazawa and E. J. E. Szathmary (eds.), Oxford University Press, Oxford, pp. 201-213.
Stone, A. C., G. R. Milner, S. Pääbo, and M. Stoneking. 1996. Sex determination of ancient human skeletons using DNA. American Journal of Physical Anthropology 99:231-238.
1995
Novick, G. E., C. C. Novick, J. Yunis, E. Yunis, K. Martinez, G. G. Duncan, G. M. Troup, P. L. Deininger, M. Stoneking, M. A. Batzer, and R. J. Herrera. 1995. Polymorphic human specific Alu insertions as markers for human identification. Electrophoresis 16:1596-1601.
Stoneking, M. 1995. Ancient DNA: How do you know when you have it and what can you do with it? American Journal of Human Genetics 57:1259-1262.
Soodyall, H., M. Stoneking, and T. Jenkins. 1995. ‘Polynesian’ mtDNA in the Malagasy. Nature Genetics 10:377-378.
Melton, T., R. Peterson, A. Redd, N. Saha, A. S. M. Sofro, J. Martinson, and M. Stoneking. 1995. Polynesian genetic affinities with southeast Asian populations as identified by mtDNA analysis. American Journal of Human Genetics 57:403-414.
Redd, A. J., N. Takezaki, S. T. Sherry, S. T. McGarvey, A. S. M. Sofro, and M. Stoneking. 1995. Evolutionary history of the COII/tRNAlys intergenic 9 b.p. deletion in human mitochondrial DNAs from the Pacific. Molecular Biology and Evolution 12:604-615.
Gill, P., C. Kimpton, R. Aliston-Greiner, K. Sullivan, M. Stoneking, T. Melton, J. Nott, S. Barritt, R. Roby, M. Holland, and V. Weedn. 1995. Establishing the identity of Anna Anderson Manahan. Nature Genetics 9:9-10.
1994
Connor, A. and M. Stoneking. 1994. Assessing ethnicity from human mitochondrial DNA types determined by hybridization with sequence-specific oligonucleotides. Journal of Forensic Sciences 39:1360-1371.
Batzer, M. A., M. Stoneking, M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ionnou, W. D. Scheer, R. J. Herrera, and P. L. Deininger. 1994. African origin of human-specific polymorphic Alu insertions. Proceedings of the National Academy of Sciences USA 91: 12288-12292.
Weiss, K. M., A. V. Buchanan, C. Daniel, and M. Stoneking. 1994. Optimizing utilization of DNA from rare or archival anthropological samples. Human Biology 66: 789-804.
Sherry, S. T., A. R. Rogers, H. Harpending, H. Soodyall, T. Jenkins, and M. Stoneking. 1994. Mismatch distributions of mtDNA reveal recent human population expansions. Human Biology 66: 761-775.
Cheng, S., R. Higuchi, and M. Stoneking. 1994. Complete mitochondrial genome amplification. Nature Genetics 7: 350-351.
Stoneking, M. 1994. In defense of “Eve” - a response to Templeton's critique. American Anthropologist 96: 131-141.
Stoneking, M. 1994. Mitochondrial DNA and human evolution. Journal of Bioenergetics and Biomembranes 26: 241-249.
1993
Batzer, M. A., M. Alegria-Hartman, H. Bazan, D. H. Kass, T. H. Shaikh, G. E. Novick, P. A. Ioannou, D. A. Boudreau, W. D. Scheer, R. J. Herrera, M. Stoneking, and P. L. Deininger. 1993. Alu repeats as markers for human population genetics. In: Proceedings of the Fourth International Symposium on Human Identification, Promega Publishing, Madison, Wisconsin, pp. 49-57.
Stone, A. C. and M. Stoneking. 1993. Ancient DNA from a pre-Columbian Amerindian population. American Journal of Physical Anthropology 92: 463-471.
Wilson, M. R., M. Stoneking, M. M. Holland, J. A. DiZinno, and B. Budowle. 1993. Guidelines for the use of mitochondrial DNA sequencing in forensic science. Crime Laboratory Digest 20: 68-77.
Hutchin, T., I. Haworth, K. Higashi, N. Fischel-Ghodsian, M. Stoneking, N. Saha, K. Arnos, and G. Cortopassi. 1993. A molecular basis for human hypersensitivity to aminoglycoside antibiotics. Nucleic Acids Research 21: 4174-4179.
Stoneking, M. 1993. DNA and recent human evolution. Evolutionary Anthropology 2: 60-73.
Harpending, H. C., S. T. Sherry, A. R. Rogers, and M. Stoneking. 1993. The genetic structure of ancient human populations. Current Anthropology 34: 483-496.
Buchanan, A. V., S. T. Sherry, K. M. Weiss, S. T. McGarvey, J. V. Neel, and M. Stoneking. 1993. Extraction of DNA from frozen red blood cells. Human Biology 65: 647-654.
1992
Stoneking, M., S. T. Sherry, and L. Vigilant. 1992. Geographic origin of human mitochondrial DNA revisited. Systematic Biology 41: 384-391.
Moonsamy, P. V., V. C. Suraj, T. L. Bugawan, R. K. Saiki, M. Stoneking, J. Roudier, M. M. A. Magzoub, A. V. S. Hill, and A. B. Begovich. 1992. Genetic diversity within the HLA Class II region: ten new DPB1 alleles and their population distribution. Tissue Antigens 40: 153-157.
Stoneking, M., S. T. Sherry, A. J. Redd, and L. Vigilant. 1992. New approaches to dating suggest a recent age for the human mtDNA ancestor. Phil. Trans. R. Soc. Lond. B 337: 167-175.
Perna, N. T., M. A. Batzer, P. L. Deininger, and M. Stoneking. 1992. Alu insertion polymorphism: a new type of marker for human population studies. Human Biology 64: 641-648.
Hedges, S. B., S. Kumar, K. Tamura, and M. Stoneking. 1992. Human origins and analysis of mitochondrial DNA sequences. Science 255: 737-739.
1991
Wilson, A.C., M. Stoneking, and R. L. Cann. 1991. Ancestral geographic states and the peril of parsimony. Systematic Zoology 40: 363-365.
Vigilant, L., M. Stoneking, H. Harpending, K. Hawkes, and A. C. Wilson. 1991. African populations and the evolution of human mitochondrial DNA. Science 253: 1503-1507.
Stoneking, M., D. Hedgecock, R. G. Higuchi, L. Vigilant, and H. A. Erlich. 1991. Population variation of human mitochondrial DNA control region sequences detected by enzymatic amplification and sequence-specific oligonucleotide probes. American Journal of Human Genetics 48: 370-382.
1990
Stoneking, M. 1990. Departure of human mtDNA variation from neutral expectations: an alternative explanation. Journal of Molecular Evolution 31: 343-346.
Helmuth, R., N. Fildes, E. Blake, M.C. Luce, J. Chimera, R. Madej, C. Gorodezky, M. Stoneking, N. Schmill, W. Klitz, R. Higuchi, and H. A. Erlich. 1990. HLA-DQ allele and genotype frequencies in various human populations, determined by using enzymatic amplification and oligonucleotide probes. American Journal of Human Genetics 47: 515-523.
Stoneking, M., L.B. Jorde, K. Bhatia, and A.C. Wilson. 1990. Geographic variation in human mitochondrial DNA from Papua New Guinea. Genetics 124: 717-733.
1989
Stoneking, M. and A.C. Wilson. 1989. Mitochondrial DNA. In: The Colonization of the Pacific: A Genetic Trail, A.V.S. Hill and S.W. Serjeantson (eds.), Oxford University Press, Oxford, pp. 215-245.
Stoneking, M. and R.L. Cann. 1989. African origin of human mitochondrial DNA. In: The Human Revolution: Behavioural and Biological Perspectives on the Origins of Modern Humans, P. Mellars and C. Stringer (eds.), Edinburgh University Press, Edinburgh, pp. 17-30.
1988
Vigilant, L., M. Stoneking, and A.C. Wilson. 1988. Conformational mutation in human mtDNA detected by direct sequencing of enzymatically amplified DNA. Nucleic Acids Research 16: 5945-5955.
1987
Wilson, A.C., M. Stoneking, R.L. Cann, E.M. Prager, S.D. Ferris, L.A. Wrischnik, and R.G. Higuchi. 1987. Mitochondrial clans and the age of our common mother. In: Human Genetics, Proceedings of the Seventh International Congress, Berlin 1986, F. Vogel and K. Sperling (eds.), Springer-Verlag, Berlin, pp. 158-164.
Wrischnik, L.A., R.G. Higuchi, M. Stoneking, H.A. Erlich, N. Arnheim, and A.C. Wilson. 1987. Length mutations in human mitochondrial DNA: direct sequencing of enzymatically amplified DNA. Nucleic Acids Research 15: 529-542.
Cann, R.L., M. Stoneking, and A.C. Wilson. 1987. Disputed African origin of human populations. Nature 329: 111-112.
Cann, R.L., M. Stoneking, and A.C. Wilson. 1987. Mitochondrial DNA and human evolution. Nature 325: 31-36.
1986
Whittam, T.S., A.G. Clark, M. Stoneking, R.L. Cann, and A.C. Wilson. 1986. Allelic variation in human mitochondrial genes based on patterns of restriction site polymorphism. Proceedings of the National Academy of Science USA 83: 9611-9615.
Stoneking, M., K. Bhatia, and A.C. Wilson. 1986. Rate of sequence divergence estimated from restriction maps of mitochondrial DNAs from Papua New Guinea. Cold Spring Harbor Symposia on Quantitative Biology 51: 433-439.
Stoneking, M., K. Bhatia, and A.C. Wilson. 1986. Mitochondrial DNA variation in Eastern Highlanders of Papua New Guinea. In: Genetic Variation and its Maintenance, D.F. Roberts and G. DeStefano (eds.), Cambridge University Press, Cambridge, pp. 87-100.
1985
Wilson, A.C., R.L. Cann, S.M. Carr, M. George, U.B. Gyllensten, K. Helm-Bychowski, R.G. Higuchi, S.R. Palumbi, E.M. Prager, R.D. Sage, and M. Stoneking. 1985. Mitochondrial DNA in relation to evolutionary genetics. Biological Journal of the Linnaean Society 26: 375-400.
1981
Stoneking, M., B. May, and J.E. Wright. 1981. Loss of duplicate gene expression in salmonids: evidence for a null allele polymorphism at the duplicate aspartate aminotransferase loci in brook trout (Salvelinus fontinalis). Biochemical Genetics 19: 1063-1077.
Stoneking, M., D.J. Wagner, and A.C. Hildebrand. 1981. Genetic evidence suggesting subspecific differences between northern and southern populations of brook trout (Salvelinus fontinalis). Copeia 1981: 810-819.
1980
Wright, J.E., B. May, M. Stoneking, and G.M. Lee. 1980. Pseudolinkage of the duplicate loci for supernatant aspartate aminotransferase in brook trout, Salvelinus fontinalis. Journal of Heredity 71: 223-228.
May, B., M. Stoneking, and J.E. Wright. 1980. Joint segregation of biochemical loci in Salmonidae: II. Linkage associations from a hybridized Salvelinus genome (S. namaycush X S. fontinalis). Genetics 95: 707-726.
1979
Stoneking, M., B. May, and J.E. Wright. 1979. Genetic variation, inheritance, and quaternary structure of malic enzyme in brook trout (Salvelinus fontinalis). Biochemical Genetics 17: 599-619.
May, B., J.E. Wright, and M. Stoneking. 1979. Joint segregation of biochemical loci in Salmonidae: results from experiments with Salvelinus and review of the literature on other species. Journal of the Fisheries Research Board of Canada 36: 1114-1128.
May, B., M. Stoneking, and J.E. Wright. 1979. Joint segregation of malate dehydrogenase and diaphorase loci in brown trout (Salmo trutta). Transactions of the American Fisheries Society 108: 373-377.