Svante Pääbo

Jones, B. N., Lewis, R. V., & Pääbo, S. (1980). Effects of flow rate and eluant composition on the high performance liquid chromatography of proteins. Journal of Liquid Chromatography, 3(9), 1373-1383.
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Jones, B. N., Pääbo, S., & Stein, S. (1981). Amino acid analysis and enzymatic sequence determination of peptides by an improved o-phthaldialdehyde precolumn labeling procedure. Journal of Liquid Chromatography, 4(4), 565-586.
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Pääbo, S., Lundqvist, G., Peterson, B., & Andersson, A. (1981). Hormone content of pancreatic islets subjected to different in vitro and in vivo functional demands. Experentia, 37, 1213-1214.
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Kämpe, O., Bellgrau, D., Hammerling, U., Lind, P., Pääbo, S., Severinsson, L., & Peterson, P. (1983). Complex formation of class I transplantation antigens and a viral glycoprotein. The Journal of Biological Chemistry, 258(17), 10594-10598.
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Pääbo, S., Weber, F., Kämpe, O., Schaffner, W., & Peterson, P. (1983). Association between transplantation antigens and a viral membrane protein synthesized from a mammalian expression vector. Cell, 33(2), 445-453.
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Pääbo, S., Kämpe, O., Severinsson, L., Andersson, M., Fernandez, C., & Peterson, P. (1985). The association between class-I transplantation antigens and an adenovirus membrane protein. Progress in Allergy, 36, 114-134.
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Pääbo, S. (1984). Über den Nachweis von DNA in altägyptischen Mumien. Das Altertum, 30, 213-218.
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Pääbo, S. (1985). Preservation of DNA in ancient Egyptian mummies. Journal of Archaeological Science, 12(6), 411-417.
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Pääbo, S. (1985). Molecular cloning of ancient Egyptian mummy DNA. Nature, 314, 644-645.
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Andersson, M., Pääbo, S., Nilsson, T., & Peterson, P. A. (1985). Impaired intracellular transport of class I MHC antigens as a possible means for adenoviruses to evade immune surveillance. Cell, 43(1), 215-222.
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Pääbo, S., Weber, F., Nilsson, T., Schaffner, W., & Peterson, P. (1986). Structural and functional dissection of an MHC class I antigen-binding adenovirus glycoprotein. EMBO Journal, 5(8), 1921-1927.
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Pääbo, S., Nilsson, T., & Peterson, P. (1986). Adenoviruses of subgenera B, C, D, and E modulate cell-surface expression of major histocompatibility complex class I antigens. Proceedings of the National Academy of Sciences of the United States of America, 83(24), 9665-9669.
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Pääbo, S. (1986). Molecular genetic investigations of ancient human remains. Cold Spring Harbor Symposia on Quantitative Biology, 51, 441-446.
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Pääbo, S. (1987). Molecular genetic methods in archaeology - a prospect. Anthropologischer Anzeiger, 45(1), 9-17.
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Andersson, L., Pääbo, S., & Rask, L. (1987). Is allograft rejection a clue to the mechanism promoting MHC polymorphism? Immunology Today, 8(7-8), 206-209.
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Pääbo, S., Bhat, B. M., Wold, W. S., & Peterson, P. A. (1987). A short sequence in the COOH-terminus makes an adenovirus membrane glycoprotein a resident of the endoplasmic reticulum. Cell, 50(2), 311-317.
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Pääbo, S., & Wilson, A. C. (1988). Polymerase chain reaction reveals cloning artefacts. Nature, 334, 387-388.
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Pääbo, S., Gifford, J. A., & Wilson, A. C. (1988). Mitochondrial DNA sequences from a 7000-year old brain. Nucleic Acids Research, 16(20), 9775-9787.
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Pääbo, S., Severinsson, L., Andersson, M., Martens, I., Peterson, P. A., & Nilsson, T. (1989). Adenovirus proteins and MHC expression. Advances in Cancer Research, 52, 151-163.
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Ljunggren, H., Pääbo, S., Cochet, M., Kling, G., Kourilsky, P., & Kärre, K. (1989). Molecular analysis of H-2-deficient lymphoma lines. Distinct defects in biosynthesis and association of MHC class I heavy chains and beta 2-microglobulin observed in cells with increased sensitivity to NK cell lysis. Journal of Immunology, 142(8), 2911-2917.
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Pääbo, S. (1989). Ancient DNA: Extraction, characterization, molecular cloning, and enzymatic amplification. Proceedings of the National Academy of Sciences of the United States of America, 86(6), 1939-1943.
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Kocher, T., Thomas, W., Meyer, A., Edwards, S., Pääbo, S., Villablanca, F., & Wilson, A. (1989). Dynamics of mitochondrial DNA evolution in animals: Amplification and sequencing with conserved primers. Proceedings of the National Academy of Sciences of the United States of America, 86(16), 6196-6200.
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Pääbo, S., Higuchi, R. G., & Wilson, A. C. (1989). Ancient DNA and the polymerase chain reaction: The emerging field of molecular archaeology (Minireview). The Journal of Biological Chemistry, 264(17), 9709-9712.
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Thomas, R. H., Schaffner, W., Wilson, A. C., & Pääbo, S. (1989). DNA phylogeny of the extinct marsupial wolf. Nature, 340, 465-467.
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Pääbo, S., Irwin, D., & Wilson, A. (1990). DNA damage promotes jumping between templates during enzymatic amplification. The Journal of Biological Chemistry, 265(8), 4718-4721.
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Thomas, W. K., Pääbo, S., Villablanca, F. X., & Wilson, A. C. (1990). Spatial and temporal continuity of kangaroo rat populations shown by sequencing mitochondrial DNA from museum specimens. Journal of Molecular Evolution, 31(2), 101-112.
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Thomas, R. H., Pääbo, S., & Wilson, A. C. (1990). Chance marsupial relationships (Reply). Nature, 345, 394.
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Pääbo, S., Thomas, W. K., Whitfield, K. M., Kumazawa, Y., & Wilson, A. C. (1991). Rearrangements of mitochondrial transfer RNA genes in marsupials. Journal of Molecular Evolution, 33(5), 426-430.
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Ward, R., Frazier, B., Dew-Jager, K., & Pääbo, S. (1991). Extensive mitochondrial diversity within a single Amerindian tribe. Proceedings of the National Academy of Sciences of the United States of America, 88(19), 8720-8724.
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Pääbo, S., & Wilson, A. C. (1991). Miocene DNA sequences - a dream come true? Current Biology, 1(1), 45-46.
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Welsh, N., Pääbo, S., & Welsh, M. (1991). Decreased mitochondrial gene expression in isolated islets of rats injected neonatally with streptozotocin. Diabetologia, 34(9), 626-631.
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Sidow, A., Wilson, A. C., & Pääbo, S. (1991). Bacterial DNA in Clarkia fossils. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 333, 429-433.
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Pääbo, S. (1991). Amplifying DNA from archeological remains: A meeting report. PCR Methods and Applications, 1, 107-110.
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Cooper, A., Mourer-Chauviré, C., Chambers, G., von Haeseler, A., Wilson, A., & Pääbo, S. (1992). Independent origins of New Zealand moas and kiwis. Proceedings of the National Academy of Sciences of the United States of America, 89(18), 8741-8744.
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Pääbo, S., Wayne, R., & Thomas, R. (1992). On the use of museum collections for molecular genetic studies. Ancient DNA Newsletter, 1, 4-5.
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Höss, M., Kohn, M., Pääbo, S., Knauer, F., & Schröder, W. (1992). Excrement analysis by PCR. Nature, 359, 199.
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Goloubinoff, P., Pääbo, S., & Wilson, A. (1993). Evolution of maize inferred from sequence diversity of an Adh2 gene segment from archaeological specimens. Proceedings of the National Academy of Sciences of the United States of America, 90(5), 1997-2001.
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Ward, R., Redd, A., Valencia, D., Frazier, B., & Pääbo, S. (1993). Genetic and linguistic differentiation in the Americas. Proceedings of the National Academy of Sciences of the United States of America, 90(22), 10663-10667.
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Janke, A., & Pääbo, S. (1993). Editing of a tRNA anticodon in marsupial mitochondria changes its codon recognition. Nucleic Acids Research, 21(7), 1523-1525.
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Schliewen, U., Fricke, H., Schartl, M., Epplen, J., & Pääbo, S. (1993). Which home for coelacanth? Nature, 363, 405.
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Höss, M., & Pääbo, S. (1993). DNA extraction from Pleistocene bones by a silica-based purification method. Nucleic Acids Research, 21(16), 3913-3914.
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von Haeseler, A., Janke, A., & Pääbo, S. (1993). Molecular phylogenetics. Verhandlungen der Deutschen Zoologischen Gesellschaft = Proceedings of the German Zoological Society, 86(2), 119-129.
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Pääbo, S. (1993). Ancient DNA. Scientific American, 269(5), 86-92.
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Thomas, W. K., & Pääbo, S. (1993). DNA sequences from old tissue remains. Mehods in Enzymology, 224, 406-419.
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Schliewen, U. K., Tautz, D., & Pääbo, S. (1994). Sympatric speciation suggested by monophyly of crater lake cichlids. Nature, 368(6472), 629-632.
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Janke, A., Feldmaier-Fuchs, G., Thomas, W. K., von Haeseler, A., & Pääbo, S. (1994). The marsupial mitochondrial genome and the evolution of placental mammals. Genetics, 137(1), 243-256.
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Handt, O., Richards, M., Trommsdorff, M., Kilger, C., Simanainen, J., Georgiev, O., Bauer, K., Stone, A., Hedges, R., Schaffner, W., Utermann, G., Sykes, B., & Pääbo, S. (1994). Molecular genetic analyses of the Tyrolean Ice Man. Science, 264(5166), 1775-1778.
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Höss, M., Pääbo, S., & Vereshchagin, N. (1994). Mammoth DNA sequences. Nature, 370(6488), 333.
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Handt, O., Höss, M., Krings, M., & Pääbo, S. (1994). Ancient DNA: Methodological challenges. Experientia, 50(6), 524-529.
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Bada, J. L., Wang, X. S., Poinar, H. N., Pääbo, S., & Poinar, G. O. (1994). Amino acid racemization in amber-entombed insects: Implications for DNA preservation. Geochimica et Cosmochimica Acta, 58(14), 3131-3135.
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Gemmell, N. J., Janke, A., Western, P. S., Watson, J. M., Pääbo, S., & Graves, J. A. M. (1994). Cloning and characterization of the platypus mitochondrial genome. Journal of Molecular Evolution, 39(2), 200-205.
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Cao, Y., Adachi, J., Janke, A., Pääbo, S., & Hasegawa, M. (1994). Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene. Journal of Molecular Evolution, 39(5), 519-527.
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Pult, I., Sajantila, A., Simanainen, J., Georgiev, O., Schaffner, W., & Pääbo, S. (1994). Mitochondrial DNA sequences from Switzerland reveal striking homogeneity of European populations. Biological chemistry Hoppe-Seyler, 375, 837-840.
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Kohn, M., Knauer, F., Stoffella, A., Schröder, W., & Pääbo, S. (1995). Conservation genetics of the European brown bear - a study using excremental PCR of nuclear and mitochondrial sequences. Molecular Ecology, 4(1), 95-103.
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Dörner, M., & Pääbo, S. (1995). Nucleotide sequence of a marsupial LINE-1 element and the evolution of placental mammals. Molecular Biology and Evolution, 12(5), 944-948.
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Mörl, M., Dörner, M., & Pääbo, S. (1995). C to U editing and modifications during the maturation of the mitochondrial tRNAAsp in marsupials. Nucleic Acids Research, 23(17), 3380-3384.
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Yokobori, S.-I., & Pääbo, S. (1995). Transfer RNA editing in land snail mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 92(22), 100432-10435.
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Comas, D., Pääbo, S., & Bertranpetit, J. (1995). Heteroplasmy in the control region of human mitochondrial DNA. Genome Research, 5(1), 89-90.
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Zischler, H., Hoss, M., Handt, O., von Haeseler, A., van der Kuyl, A., Goudsmit, J., & Pääbo, S. (1995). Detecting dinosaur DNA. Science, 268(5214), 1192-1193.
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Pääbo, S. (1995). The Y chromosome and the origin of all of us (men). Science, 268(5214), 1141-1142.
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Sajantila, A., Lahermo, P., Anttinen, T., Lukka, M., Sistonen, P., Savontaus, M., Aula, P., Beckman, L., Tranebjaerg, L., Gedde-Dahl, T., Issel-Tarver, L., DiRienzo, A., & Pääbo, S. (1995). Genes and languages in Europe: An analysis of mitochondrial lineages. Genome Research, 5(1), 42-52.
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Yokobori, S.-I., & Pääbo, S. (1995). tRNA editing in metazoans. Nature, 377(6549), 490.
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Zischler, H., Geisert, H., von Haeseler, A., & Pääbo, S. (1995). A nuclear 'fossil' of the mitochondrial D-loop and the origin of modern humans. Nature, 378(6556), 489-492.
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Sajantila, A., & Pääbo, S. (1995). Language replacement in Scandinavia. Nature Genetics, 11, 359-360.
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Petri, B., Neuweiler, G., & Pääbo, S. (1995). Mitochondrial diversity and heteroplasmy in two European populations of the large mouse-eared bat, Myotis myotis. Symposia of the Zoological Society of London, 67, 397-403.
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Janke, A., Gemmell, N. J., Feldmaier-Fuchs, G., von Haeseler, A., & Pääbo, S. (1996). The mitochondrial genome of a monotreme - the platypus (Ornithrohynchus anatinus). Journal of Molecular Evolution, 42(2), 153-159.
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Höss, M., Dilling, A., Currant, A., & Pääbo, S. (1996). Molecular phylogeny of the extinct ground sloth Mylodon darwinii. Proceedings of the National Academy of Sciences of the United States of America, 93(1), 181-185.
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Stone, A. C., Milner, G. R., Pääbo, S., & Stoneking, M. (1996). Sex determination of ancient human skeletons using DNA. American Journal of Physical Anthropology, 99(2), 231-238.
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Höss, M., Jaruga, P., Zastawny, T. H., Dizdaroglu, M., & Pääbo, S. (1996). DNA damage and DNA sequence retrieval from ancient tissues. Nucleic Acids Research, 24(7), 1304-1307.
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Tishkoff, S. A., Dietzsch, E., Speed, W., Pakstis, A. J., Kidd, J. R., Cheung, K., Bonné-Tamir, B., Santachiara-Benerecetti, A. S., Moral, P., Krings, M., Pääbo, S., Watson, E., Risch, N., Jenkins, T., & Kidd, K. K. (1996). Global patterns of linkage disequilibrium at the CD4 locus and modern human origins. Science, 271(5254), 1380-1387.
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Thomas, R., Zischler, H., Pääbo, S., & Stoneking, M. (1996). Novel mitochondrial DNA insertion polymorphism and its usefulness for human population studies. Human Biology, 68(6), 847-854.
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Armour, J. A., Anttinen, T., May, C. A., Vega, E. E., Sajantila, A., Kidd, J. R., Kidd, K. K., Bertranpetit, J., Pääbo, S., & Jeffreys, A. J. (1996). Minisatellite diversity supports a recent African origin for modern humans. Nature Genetics, 13, 154-160.
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Handt, O., Krings, M., Ward, R. H., & Pääbo, S. (1996). The retrieval of ancient human DNA sequences. American Journal of Human Genetics, 59(2), 368-376.
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Börner, G. V., & Pääbo, S. (1996). Evolutionary fixation of RNA editing. Nature, 383, 225.
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Poinar, H. N., Höss, M., Bada, J. L., & Pääbo, S. (1996). Amino acid racemization and the preservation of ancient DNA. Science, 272(5263), 864-866.
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von Haeseler, A., Sajantila, A., & Pääbo, S. (1996). The genetical archaeology of the human genome. Nature Genetics, 14, 135-140.
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Watson, E., Bauer, K., Aman, R., Weiss, G., von Haeseler, A., & Pääbo, S. (1996). mtDNA sequence diversity in Africa. American Journal of Human Genetics, 59(2), 437-444.
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Sajantila, A., Salem, A., Savolainen, P., Bauer, K., Gierig, C., & Pääbo, S. (1996). Paternal and maternal DNA lineages reveal a bottleneck in the founding of the Finnish population. Proceedings of the National Academy of Sciences of the United States of America, 93(21), 12035-12039.
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Salem, A. H., Badr, F. M., Gaballah, M. F., & Pääbo, S. (1996). The genetics of traditional living: Y-chromosomal and mitochondrial lineages in the Sinai Peninsula. American Journal of Human Genetics, 59(3), 741-743.
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Börner, G., Mörl, M., Janke, A., & Pääbo, S. (1996). RNA editing changes the identity of a mitochondrial tRNA in marsupials. The EMBO Journal, 15(21), 5949-5957.
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Pääbo, S. (1996). Mutational hot spots in the mitochondrial microcosm. American Journal of Human Genetics, 59(3), 493-496.
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Petri, B., von Haeseler, A., & Pääbo, S. (1996). Extreme sequence heteroplasmy in bat mitochondrial DNA. Biological Chemistry, 377, 661-667.
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Kilger, C., Krings, M., Poinar, H., & Pääbo, S. (1997). "Colony sequencing": Direct sequencing of plasmid DNA from bacterial colonies. Biotechniques, 22(3), 412-418.
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Benes, V., Kilger, C., Voss, H., Pääbo, S., & Ansorge, W. (1997). Direct primer walking on P1 plasmid DNA. BioTechniques, 23(1), 98-100.
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Yokobori, S.-i., & Pääbo, S. (1997). Polyadenylation creates the discriminator nucleotide of chicken mitochondrial tRNA Tyr. Journal of Molecular biology, 265(2), 95-99.
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Petri, B., Pääbo, S., Haeseler, A. v., & Tautz, D. (1997). Paternity assessment and population subdivision in a natural population of the larger mouse-eared bat Myotis myotis. Molecular Ecology, 6(3), 235-242.
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Kilger, C., & Pääbo, S. (1997). Direct exponential amplification and sequencing (DEXAS) of genomic DNA. Biological Chemistry Hoppe-Seyler (Berlin), 378(2), 99-105.
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Kilger, C., & Pääbo, S. (1997). Direct DNA sequence determination from total genomic DNA. Nucleic Acids Research, 25(10), 2032-2032.
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Krings, M., Stone, A. C., Schmitz, R. W., Krainitzki, H., Stoneking, M., & Pääbo, S. (1997). Neandertal DNA sequences and the origin of modern humans. Cell, 90(1), 19-30.
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Laan, M., & Pääbo, S. (1997). Demographic history and linkage disequilibrium in human populations. Nature Genetics, 17, 435-438.
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Börner, G. V., Yokobori, S.-i., Mörl, M., & Pääbo, S. (1997). RNA editing in metazoan mitochondria: staying fit without sex. FEBS Letters, 409(3), 2032-2034.
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Cooper, A., Poinar, H. N., Pääbo, S., Radovcic, J., Debénath, A., Caparros, M., Barroso-Ruiz, C., Bertranpetit, J., Nielsen-Marsh, C., Hedges, R. E. M., & Sykes, B. (1997). Neandertal genetics. Science, 277(5329), 1021-1025.
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Gravlung, P., Meldgaard, M., Pääbo, S., & Arctander, P. (1998). Polyphyletic origin of the small-bodied, high-arctic subspecies of tundra reindeer (Rangifer tarandus). Molecular Phylogenetics and Evolution, 10(2), 151-159.
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Castresana, J., Feldmaier-Fuchs, G., & Pääbo, S. (1998). Codon reassignment and amino acid composition in hemichordate mitochondria. Proceedings of the National Academy of Sciences of the United States of America, 95(7), 3703-3707.
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Terwilliger, J. D., Zöllner, S., Laan, M., & Pääbo, S. (1998). Mapping genes through the use of linkage disequilibrium generated by genetic drift: 'Drift Mapping' in small populations with no demographic expansion. Human Heredity, 48(3), 138-154.
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Allen, M., Engström, A.-S., Meyer, S., Handt, O., Saldeen, T., von Haeseler, A., Pääbo, S., & Gyllenstein, U. (1998). Mitochondrial DNA sequencing of shed hairs and saliva on robbery caps: Sensitivity and matching probabilities. Journal of Forensic Sciences, 43(3), 453-464.
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Castresana, J., Feldmaier-Fuchs, G., Yokobori, S.-i., Satoh, N., & Pääbo, S. (1998). The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria. Genetics, 150(3), 1115-1123.
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Laan, M., & Pääbo, S. (1998). Mapping genes by drift-generated linkage disequilibrium. American Journal of Human Genetics, 63(2), 654-656.
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Poinar, H. N., Hofreiter, M., Spaulding, W. G., Martin, P. S., Stankiewicz, A. B., Bland, H., Evershed, R. P., Possnert, G., & Pääbo, S. (1998). Molecular coproscopy: Dung and diet of the extinct ground sloth Nothrotheriops shastensis. Science, 281(5375), 402-406.
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Cao, Y., Janke, A., Waddell, P. J., Westermann, M., Takenaka, O., Murata, S., Okada, N., Pääbo, S., & Hasegawa, M. (1998). Conflict among individual mitochondrial proteins in resolving the phylogeny of eutherian orders. Journal of Molecular Evolution, 47(3), 307-322.
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Greenwood, A. D., & Pääbo, S. (1999). Nuclear insertion sequences of mitochondrial DNA predominate in hair but not in blood of elephants. Molecular Ecology, 8(1), 133-137.
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Krings, M., Salem, A.-e.-H., Bauer, K., Geisert, H., Malek, A. K., Chaix, L., Simon, C., Welsby, D., Di Rienzo, A., Utermann, G., Sajantila, A., Pääbo, S., & Stoneking, M. (1999). mtDNA analysis of Nile River Valley populations: A genetic corridor or a barrier to migration? American Journal of Human Genetics, 64(4), 1166-1176.
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Kaessmann, H., Heißig, F., Haeseler, A. v., & Pääbo, S. (1999). DNA sequence variation in a non-coding region of low recombination on the human X chromosome. Nature Genetics, 22(1), 78-81.
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Krings, M., Geisert, H., Schmitz, R. W., Krainitzki, H., & Pääbo, S. (1999). DNA sequence of the mitochondrial hypervariable region II from the Neandertal type specimen. Proceedings of the National Academy of Sciences of the United States of America, 96(10), 5581-5585.
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Greenwood, A. D., Capelli, C., Possnert, G., & Pääbo, S. (1999). Nuclear DNA sequences from late Pleistocene megafauna. Molecular Biology and Evolution, 16(11), 1466-1473.
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Pääbo, S. (1999). Agriculture: Neolithic genetic engineering (News and Views). Nature, 398, 194-195.
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Vigilant, L., & Pääbo, S. (1999). A chimpanzee millenium (Guest Editorial). Biological Chemistry, 380(12), 1353-1354.
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Kaessmann, H., Wiebe, V., & Pääbo, S. (1999). Extensive nuclear DNA sequence diversity among chimpanzees. Science, 286(5442), 1159-1162.
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Pääbo, S. (1999). Human evolution. Trends in Genetics, 15(12), M13-M16.
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Yokobori, S.-i., Ueda, T., Feldmaier-Fuchs, G., Pääbo, S., Kondow, A., Nishikawa, K., & Watanabe, K. (1999). Complete DNA sequence of the mitochondrial genome of the ascidian Halocynthia roretzi (Chordata, Urochordata). Genetics, 153(4), 1851-1862.
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Erlandsson, R., Wilson, J. F., & Pääbo, S. (2000). Sex chromosomal transposable element accumulation and male-driven substitutional evolution in humans. Molecular Biology and Evolution, 17(5), 804-812.
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Börner, G. V., Zeviani, M., Tiranti, V., Carrara, F., Hoffmann, S., Gerbitz, K. D., Lochmüller, H., Klopstock, T., Pongratz, D., Melberg, A., Holme, E., & Pääbo, S. (2000). Decreased aminoacylation of mutant tRNAs in MELAS but not in MERRF patients. Human Molecular Genetics, 9(4), 467-475.
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Pääbo, S. (2000). Of bears, conservation genetics, and the value of time travel (Commentary). Proceedings of the National Academy of Sciences USA, 97(4), 1320-1321.
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Di Benedetto, G., Nasidze, I., Stenico, M., Nigro, L., Krings, M., Lanzinger, M., Vigilant, L., Stoneking, M., Pääbo, S., & Barbujani, G. (2000). Mitochondrial DNA sequences in prehistoric human remains from the Alps. European Journal of Human Genetics, 8(9), 669-677.
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Hofreiter, M., Poinar, H. N., Spaulding, W. G., Bauer, K., Martin, P. S., Possnert, G., & Pääbo, S. (2000). A molecular analysis of ground sloth diet through the last glaciation. Molecular Ecology, 9(12), 1975-1984.
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Krings, M., Capelli, C., Tschentscher, F., Geisert, H., Meyer, S., Haeseler, A. v., Grossschmidt, K., Possnert, G., Paunovic, M., & Pääbo, S. (2000). A view of Neandertal genetic diversity. Nature Genetics, 26, 144-146.
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Ingman, M., Kaessmann, H., Pääbo, S., & Gyllenstein, U. (2000). Mitochondrial genome variation and the origin of modern humans. Nature, 408, 708-713.
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Motz, M., Pääbo, S., & Kilger, C. (2000). Improved cycle sequencing of GC-rich templates by a combination of nucleotide analogs. BioTechniques, 29(2), 268-270.
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Greenwood, A. D., Castresana, J., Feldmaier-Fuchs, G., & Pääbo, S. (2001). A molecular phylogeny of two extinct sloths. Molecular Phylogenetics and Evolution, 18(1), 94-103.
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Kaessmann, H., Wiebe, V., Weiss, G., & Pääbo, S. (2001). Great ape DNA sequences reveal a reduced diversity and an expansion in humans. Nature Genetics, 27, 155-156.
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Pääbo, S. (2001). The human genome and our view of ourselves. Science, 291(5507), 1219-1220.
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Poinar, H. N., Kuch, M., Sobolik, K. D., Barnes, I., Stankiewicz, A. B., Kuder, T., Spaulding, W. G., Bryant, V. M., Cooper, A., & Pääbo, S. (2001). A molecular analysis of dietary diversity for three archaic Native Americans. Proceedings of the National Academy of Sciences USA, 98(8), 4317-4322.
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Poinar, H. N., Kuch, M., & Pääbo, S. (2001). Molecular analyses of oral polio vaccine samples. Science, 292(5517), 743-744.
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Hofreiter, M., Serre, D., Poinar, H. N., Kuch, M., & Pääbo, S. (2001). Ancient DNA. Nature Reviews Genetics, 2, 353-359.
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Dörner, M., Altmann, M., Pääbo, S., & Mörl, M. (2001). Evidence for import of a lysyl-tRNA into marsupial mitochondria. Molecular Biology of the Cell, 12(9), 2688-2698.
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Hofreiter, M., Jänicke, V. R., Serre, D., Haeseler, A. v., & Pääbo, S. (2001). DNA sequences from multiple amplifications reveal artifacts induced by cytosine deamination in ancient DNA. Nucleic Acids Research, 29(23), 4793-4799.
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Kaessmann, H., & Pääbo, S. (2002). The genetical history of humans and the great apes. Journal of Internal Medicine, 251(1), 1-18.
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Kaessmann, H., Zöllner, S., Gustafsson, A. C., Wiebe, V., Laan, M., Lundeberg, J., Uhlen, M., & Pääbo, S. (2002). Extensive linkage disequilibrium in small human populations in Eurasia. American Journal of Human Genetics, 70(3), 673-685.
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Hofreiter, M., Capelli, C., Krings, M., Waits, L., Conard, N. J., Munzel, S., Rabeder, G., Nagel, D., Paunovic, M., Jambresic, G., Meyer, S., Weiss, G., & Pääbo, S. (2002). Ancient DNA analyses reveal high mitochondrial DNA sequence diversity and parallel morphological evolution of late pleistocene cave bears. Molecular Biology and Evolution, 19(8), 1244-1250.
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Ebersberger, I., Metzler, D., Schwarz, C., & Pääbo, S. (2002). Genomewide comparison of DNA sequences between humans and chimpanzees. American Journal of Human Genetics, 70(6), 1490-1497.
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Enard, W., Khaitovich, P., Klose, J., Zöllner, S., Heißig, F., Giavalisco, P., Nieselt-Struwe, K., Muchmore, E., Varki, A., Ravid, R., Doxiadis, G. M., Bontrop, R. E., & Pääbo, S. (2002). Intra- and interspecific variation in primate gene expression patterns. Science, 296(5566), 340-343.
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Enard, W., Przeworski, M., Fisher, S. E., Lai, C. S. L., Wiebe, V., Kitano, T., Monaco, A. P., & Pääbo, S. (2002). Molecular evolution of FOXP2, a gene involved in speech and language. Nature, 418(6900), 869-872.
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Chou, H. H., Hayakawa, T., Diaz, S., Krings, M., Indriati, E., Leakey, M., Pääbo, S., Satta, Y., Takahata, N., & Varki, A. (2002). Inactivation of CMP-N-acetylneuraminic acid hydroxylase occurred prior to brain expansion during human evolution. Proceedings of the National Academy of Sciences of the United States of America, 99(18), 11736-11741.
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Motz, M., Sagner, G., Pääbo, S., & Kilger, C. (2003). Sequential DEXAS: A method for obtaining DNA sequences from genomic DNA and blood in one reaction. Nucleic Acids Research, 31(20): e121, pp. 1-8.
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Schmitz, R. W., Serre, D., Bonani, G., Feine, S., Hillgruber, F., Krainitzki, H., Pääbo, S., & Smith, F. H. (2002). The Neandertal type site revisited: Interdisciplinary investigations of skeletal remains from the Neander Valley, Germany. Proceedings of the National Academy of Sciences of the United States of America, 99(20), 13342-13347.
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Hellmann, I., Zöllner, S., Enard, W., Ebersberger, I., Nickel, B., & Pääbo, S. (2003). Selection on human genes as revealed by comparisons to chimpanzee cDNA. Genome Research, 13, 831-837.
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Enard, W., Ebersberger, I., Fischer, A., Heißig, F., Hellmann, I., Höffner, B., Khaitovich, P., Kitano, T., Köhler, K., Metzler, D., Nickel, B., Przeworski, M., Schwarz, C., Nowick, K., Wiebe, V., Winkler, M., Zöllner, S., & Pääbo, S.(2002). Functional genomics in the chimpanzee.
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Gilad, Y., Man, O., Pääbo, S., & Lancet, D. (2003). Human specific loss of olfactory receptor genes. Proceedings of the National Academy of Sciences of the United States of America, 100(6), 3324-3327.
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Pääbo, S. (2003). The mosaic that is our genome. Nature, 421(6921), 409-412.
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Gilad, Y., Bustamante, C. D., Lancet, D., & Pääbo, S. (2003). Natural selection on the olfactory receptor gene family in humans and chimpanzees. The American Journal of Human Genetics, 73(3), 489-501.
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Hellmann, I., Ebersberger, I., Ptak, S. E., Pääbo, S., & Przeworski, M. (2003). A neutral explanation for the correlation of diversity with recombination rates in humans. American Journal of Human Genetics, 72(6), 1527-1535.
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Otte, K., Kranz, H., Kober, I., Thompson, P., Hoefer, M., Haubold, B., Remmel, B., Voss, H., Kaiser, C., Albers, M., Cheruvallath, Z., Jackson, D., Casari, G., Koegl, M., Pääbo, S., Mous, J., Kremoser, C., & Deuschle, U. (2003). Identification of Farnesoid X Receptor ß as a Novel Mammalian Nuclear Receptor Sensing Lanosterol. Molecular and Cellular Biology, 23(3), 864-872.
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Kitano, T., Schwarz, C., Nickel, B., & Pääbo, S. (2003). Gene diversity patterns at 10 X-chromosomal loci in humans and chimpanzees. Molecular Biology and Evolution, 20(8), 1281-1289.
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Poinar, H. N., Kuch, M., McDonald, H. G., Martin, P. S., & Pääbo, S. (2003). Nuclear gene sequences from a late Pleistocene sloth coprolite. Current Biology, 13(13), 1150-1152.
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Jänicke-Després, V. R., Buckler, E. S., Smith, B. D., Gilbert, M. T. P., Cooper, A., Doebley, J., & Pääbo, S. (2003). Early allelic selection in maize as revealed by ancient DNA. Science, 302(5648), 1206-1208.
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Thalmann, O., Hebler, J., Poinar, H. N., Pääbo, S., & Vigilant, L. (2004). Unreliable mtDNA data due to nuclear insertions: A cautionary tale from analysis of humans and other great apes. Molecular Ecology, 13(2), 321-335.
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Serre, D., Langaney, A., Chell, M., Teschler-Nicola, M., Paunovic, M., Mennecier, P., Hofreiter, M., Possnert, G., & Pääbo, S. (2004). No evidence of Neandertal mtDNA contribution to early modern humans. PLoS Biology, 2(3): e57, pp. 313-317.
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Hofreiter, M., Rabeder, G., Jänicke-Després, V. R., Withalm, G., Nagel, D., Paunovic, M., Jambresic, G., & Pääbo, S. (2004). Evidence for reproductive isolation between cave bear populations. Current Biology, 14(1), 40-43.
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Khaitovich, P., Muetzel, B., She, X., Lachmann, M., Hellmann, I., Dietzsch, J., Steigele, S., Do, H.-H., Weiss, G., Enard, W., Heißig, F., Arendt, T., Nieselt-Struwe, K., Eichler, E. E., & Pääbo, S. (2004). Regional patterns of gene expression in human and chimpanzee brains. Genome Research, 14, 1462-1473.
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Fischer, A., Wiebe, V., Pääbo, S., & Przeworski, M. (2004). Evidence for a complex demographic history of chimpanzees. Molecular Biology and Evolution, 21(5), 799-808.
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Ptak, S. E., Roeder, A. D., Stephens, M., Gilad, Y., Pääbo, S., & Przeworski, M. (2004). Absence of the TAP2 human recombination hotspot in chimpanzees. PLoS Biology, 2(6), 0849-0855.
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Enard, W., Fassbender, A., Model, F., Adorján, P., Pääbo, S., & Olek, A. (2004). Differences in DNA methylation patterns between humans and chimpanzees. Current Biology, 14(4), R148-R149.
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Enard, W., & Pääbo, S. (2004). Comparative primate genomics. Annual Review of Genomics and Human Genetics, 5, 351-378.
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Gilad, Y., Wiebe, V., Przeworski, M., Lancet, D., & Pääbo, S. (2004). Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates. PLoS Biology, 2(1): e5 [V. Wiebe and S. Pääbo retracted authorship].
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Serre, D., Hofreiter, M., & Pääbo, S. (2004). Mutations induced by ancient DNA extracts? Molecular Biology and Evolution, 21(8), 1463-1467.
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Khaitovich, P., Weiss, G., Lachmann, M., Hellmann, I., Enard, W., Muetzel, B., Wirkner, U., Ansorge, W., & Pääbo, S. (2004). A neutral model of transcriptome evolution. PLoS Biology, 2(5): e132, pp. 0682-0689.
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Serre, D., & Pääbo, S. (2004). Evidence for gradients of human genetic diversity within and among continents. Genome Research, 14, 1679-1685.
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The international Chimpanzee Chromosome 22 Consortium, Watanabe, H., Fujiyama, A., Hattory, M., Taylor, T. D., Toyoda, A., Kuroki, Y., Noguchi, H., BenKahla, A., Lehrach, H., Sudbrak, R., Kube, M., Taenzer, S., Galgoczy, P., Platzer, M., Scharfe, M., Nordsiek, G., Blöcker, H., Hellmann, I., Khaitovich, P., Pääbo, S., Reinhardt, R., Zheng, H.-J., Zhang, X.-L., Zhu, G.-F., Wang, B.-F., Fu, G., Ren, S.-X., Zhao, G.-P., Chen, Z., Lee, Y.-S., Cheong, J.-E., Choi, S.-H., Wu, K.-M., Liu, T.-T., Hsiao, K.-J., Tsai, S.-F., Kim, C.-G., Oota, S., Kitano, T., Kohora, Y., Saitou, N., Park, H.-S., Wang, S.-Y., Yaspo, M.-L., & Sakaki, Y. (2004). DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature, 429, 382-388.
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Hofreiter, M., Serre, D., Rohland, N., Rabeder, G., Nagel, D., Conard, N. J., Münzel, S., & Pääbo, S. (2004). Lack of phylogeography in European mammals before the last glaciation. PNAS, 101(35), 12963-12968.
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Pääbo, S., Poinar, H. N., Serre, D., Jänicke-Després, V. R., Hebler, J., Rohland, N., Kuch, M., Krause, J., Vigilant, L., & Hofreiter, M. (2004). Genetic analyses from ancient DNA. Annual Review of Genetics, 38, 645-679.
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Fischer, A., Gilad, Y., Man, O., & Pääbo, S. (2005). Evolution of bitter taste receptors in humans and apes. Molecular Biology and Evolution, 22(3), 432-436.
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Yohn, C. T., Jiang, Z., McGrath, S. D., Hayden, K. E., Khaitovich, P., Johnson, M. E., Eichler, M. Y., McPerson, J. D., Zhao, S., Pääbo, S., & Eichler, E. E. (2005). Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans. PLoS Biology, 3(4): e110.
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Khaitovich, P., Hellmann, I., Enard, W., Nowick, K., Leinweber, M., Franz, H., Weiss, G., Lachmann, M., & Pääbo, S. (2005). Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees. Science, 309(5742), 1850-1854.
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Laan, M., Wiebe, V., Khusnutdinova, E., Remm, M., & Pääbo, S. (2005). X-chromosome as a marker for population history: Linkage disequilibrium and haplotype study in Eurasian populations. European Journal of Human Genetics, 13(4), 452-462.
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Ptak, S. E., Hinds, D. A., Köhler, K., Nickel, B., Patil, N., Ballinger, D. G., Przeworski, M., Frazer, K. A., & Pääbo, S. (2005). Fine-scale recombination patterns differ between chimpanzees and humans. Nature Genetics, 37(4), 429-434.
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Hellmann, I., Prüfer, K., Ji, H. K., Zody, M. C., Pääbo, S., & Ptak, S. E. (2005). Why do human diversity levels vary at a megabase scale? Genome Research, 15(9), 1222-1231.
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Rohland, N., Pollack, J. L., Nagel, D., Beauval, C., Airvaux, J., Pääbo, S., & Hofreiter, M. (2005). The population history of extant and extinct hyenas. Molecular Biology and Evolution, 22(12), 2435-2443.
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Heißig, F., Krause, J., Bryk, J., Khaitovich, P., Enard, W., & Pääbo, S. (2005). Functional analysis of human and chimpanzee promoters. Genome Biology, 6: R57.
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Beauval, C., Maureille, B., Lacrampe-Cuyaubere, F., Serre, D., Peressinotto, D., Bordes, J. G., Cochard, D., Couchoud, I., Dubrasquet, D., Laroulandie, W., Lenoble, A., Mallye, J. B., Pasty, S., Primault, J., Rohland, N., Pääbo, S., & Trinkaus, E. (2005). A late Neandertal femur from Les Rochers-de-Villeneuve, France. Proceedings of the National Academy of Sciences of the United States of America, 102(20), 7085-7090.
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Khaitovich, P., Pääbo, S., & Weiss, G. (2005). Toward a neutral evolutionary model of gene expression. Genetics, 170(2), 929-939.
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Krause, J., Dear, P. H., Pollack, J. L., Slatkin, M., Spriggs, H., Barnes, I., Lister, A. M., Ebersberger, I., Pääbo, S., & Hofreiter, M. (2006). Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature, 439(7077), 724-727.
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Noonan, J. P., Hofreiter, M., Smith, D., Priest, J. R., Rohland, N., Rabeder, G., Krause, J., Detter, J. C., Pääbo, S., & Rubin, E. M. (2005). Genomic sequencing of Pleistocene cave bears. Science, 309(5734), 597-599.
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Franz, H., Ullmann, C., Becker, A., Ryan, M., Bahn, S., Arendt, T., Simon, M., Pääbo, S., & Khaitovich, P. (2005). Systematic analysis of gene expression in human brains before and after death. Genome Biology, 6(13): R112, pp. R112.1-R112.9.
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Fraser, H. B., Khaitovich, P., Plotkin, J. B., Pääbo, S., & Eisen, M. B. (2005). Aging and gene expression in the primate brain. PLoS Biology, 3(9): e274, pp. 1653-1661.
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Römpler, H., Schulz, A., Pitra, C., Coop, G., Przeworski, M., Pääbo, S., & Schöneberg, T. (2005). The rise and fall of the chemoattractant receptor GPR33. Journal of Biological Chemistry, 280(35), 31068-31075.
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The Chimpanzee Sequencing and Analysis Consortium, Mikkelsen, T. S., Hillier, L. W., Eichler, E. E., Zody, M. C., Jaffe, D. B., Yang, S.-P., Enard, W., Hellmann, I., Lindblad-Toh, K., Altheide, T. K., Archidiacono, N., Bork, P., Butler, J., Chang, J. L., Cheng, Z., Chinwalla, A. T., de Jong, P., Delehaunty, K. D., Fronick, C. C., Fulton, L. L., Gilad, Y., Glusman, G., Gnerre, S., Graves, T. A., Hayakawa, T., Hayden, K. E., Huang, X., Ji, H., Kent, W. J., King, M.-C., Kulbokasl, E. J., Lee, M. K., Liu, G., Lopez-Otin, C., Makova, K. D., Man, O., Mardis, E. R., Mauceli, E., Miner, T. L., Nash, W. E., Nelson, J. O., Pääbo, S., Patterson, N. J., Pohl, C. S., Pollard, K. S., Prüfer, K., Puente, X. S., Reich, D., Rocchi, M., Rosenbloom, K., Ruvolo, M., Richter, D. J., Schaffner, S. F., Smit, A. F. A., Smith, S. M., Suyama, M., Taylor, J., Torrents, D., Tuzun, E., Varki, A., Velasco, G., Ventura, M., Wallis, J. W., Wendl, M. C., Wilson, R. K., Lander, E. S., & Waterston, R. H. (2005). Initial sequence of the chimpanzee genome and comparison with the human genome. Nature, 437(7055), 69-87.
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Cheng, Z., Ventura, M., She, X., Khaitovich, P., Graves, T. A., Osoegawa, K., Church, D., de Jong, P., Wilson, R. K., Pääbo, S., Rocchi, M., & Eichler, E. E. (2005). A genome-wide comparison of recent chimpanzee and human segmental duplications. Nature, 437(7055), 88-93.
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Khaitovich, P., Tang, K., Franz, H., Kelso, J., Hellmann, I., Enard, W., Lachmann, M., & Pääbo, S. (2006). Positive selection on gene expression in the human brain. Current Biology, 16(10), R356-R358.
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Somel, M., Khaitovich, P., Bahn, S., Pääbo, S., & Lachmann, M. (2006). Gene expression becomes heterogeneous with age. Current Biology, 16(10), R359-R360.
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Fish, J. L., Kosodo, Y., Enard, W., Pääbo, S., & Huttner, W. B. (2006). Aspm specifically maintains symmetric proliferative divisions of neuroepithelial cells. Proceedings of the National Academy of Sciences of the United States of America, 103(27), 10438-10443.
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Prüfer, K., Muetzel, B., Do, H.-H., Weiss, G., Khaitovich, P., Rahm, E., Pääbo, S., Lachmann, M., & Enard, W. (2007). FUNC: A package for detecting significant associations between gene sets and ontological annotations. BMC Bioinformatics, 8: 41.
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Hublin, J.-J., & Pääbo, S. (2006). Neandertals. Current Biology, 16(4), R113-R114.
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Khaitovich, P., Enard, W., Lachmann, M., & Pääbo, S. (2006). Evolution of primate gene expression. Nature Reviews Genetics, 7, 693-702.
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Fischer, A., Pollack, J. L., Thalmann, O., Nickel, B., & Pääbo, S. (2006). Demographic history and genetic differentiation in apes. Current Biology, 16(11), 1133-1138.
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Stiller, M., Green, R. E., Ronan, M. T., Simons, J. F., Du, L., Egholm, M., Rothberg, J. M., Keats, S. G., Ovodov, N. D., Antipina, E. E., Baryshnikov, G. F., Kuzmin, Y. V., Vasilevski, A. A., Wuenschell, G. E., Termini, J., Hofreiter, M., Jänicke-Després, V. R., Pääbo, S., & He, W. (2006). Patterns of nucleotide misincorporations during enzymatic amplification and direct large-scale sequencing of ancient DNA. Proceedings of the National Academy of Sciences of the United States of America, 103(37), 13578-13584.
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Noonan, J. P., Coop, G., Kudaravalli, S., Smith, D., Krause, J., Alessi, J., Chen, J., Platt, D., Pääbo, S., Pritchard, J. K., & Rubin, E. M. (2006). Sequencing and analysis of Neanderthal genomic DNA. Science, 314, 1113-1118.
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Green, R. E., Krause, J., Ptak, S. E., Briggs, A. W., Ronan, M. T., Simons, J. F., Du, L., Egholm, M., Rothberg, J. M., Paunovic, M., & Pääbo, S. (2006). Analysis of one million base pairs of Neanderthal DNA. Nature, 444, 330-336.
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Khaitovich, P., Kelso, J., Franz, H., Visagie, J., Giger, T., Joerchel, S., Petzold, E., Green, R. E., Lachmann, M., & Pääbo, S. (2006). Functionality of intergenic transcription: An evolutionary comparison. PLoS Genetics, 2(10): e171, pp. 1590-1598.
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Prabhakar, S., Noonan, J. P., Pääbo, S., & Rubin, E. M. (2006). Accelerated evolution of conserved noncoding sequences in humans. Science, 314, 786-786.
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Stroud, J. C., Wu, Y. Q., Bates, D. L., Han, A. D., Nowick, K., Pääbo, S., Tong, H., & Chen, L. (2006). Structure of the forkhead domain of FOXP2 bound to DNA. Structure, 14(1), 159-166.
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Lalueza-Fox, C., Krause, J., Caramelli, D., Catalano, G., Milani, L., Sampietro, M. L., Calafell, F., Martinez-Maza, C., Bastir, M., García-Tabernero, A., de la Rasilla, M., Fortea, J., Pääbo, S., Bertranpetit, J., & Rosas, A. (2006). Mitochondrial DNA of an Iberian neandertal suggests a population affinity with other European neandertals. Current Biology, 16(16), R629-R630.
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Hofreiter, M., Münzel, S., Conard, N. J., Pollack, J. L., Slatkin, M., Weiss, G., & Pääbo, S. (2007). Sudden replacement of cave bear mitochondrial DNA in the late Pleistocene. Current Biology, 17(4), R122-R123.
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Thalmann, O., Fischer, A., Lankester, F., Pääbo, S., & Vigilant, L. (2007). The complex evolutionary history of gorillas: Insights from genomic data. Molecular Biology and Evolution, 24(1), 146-158.
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Chen, H., Green, R. E., Pääbo, S., & Slatkin, M. (2007). The joint allele-frequency spectrum in closely related species. Genetics, 177(1), 387-398.
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Weber, M., Hellmann, I., Stadler, M. B., Ramos, L., Pääbo, S., Rebhan, M., & Schübeler, D. (2007). Distribution, silencing potential and evolutionary impact of promoter DNA methylation in the human genome. Nature Genetics, 39(4), 457-466.
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Krause, J., Orlando, L., Serre, D., Viola, B., Prüfer, K., Richards, M. P., Hublin, J.-J., Hänni, C., Derevianko, A. P., & Pääbo, S. (2007). Neanderthals in central Asia and Siberia. Nature, 449(7164), 902-904.
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d'Abbadie, M., Hofreiter, M., Vaisman, A., Loakes, D., Gasparutto, D., Cadet, J., Woodgate, R., Pääbo, S., & Holliger, P. (2007). Molecular breeding of polymerases for amplification of ancient DNA. Nature Biotechnology, 25(8), 939-943.
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Krause, J. *., Lalueza-Fox, C., Ludovic, O., Enard, W., Green, R. E., Burbano, H. A., Hublin, J.-J., Hänni, C., Fortea, J., de la Rasilla, M., Bertranpetit, J., Rosas, A., & Pääbo, S. (2007). The derived FOXP2 variant of modern humans was shared with Neandertals. Current Biology, 17(21), 1908-1912.
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Fu, N., Drinnenberg, I., Kelso, J. F., Wu, J.-R., Pääbo, S., Zeng, R., & Khaitovich, P. (2007). Comparison of protein and mRNA expression evolution in humans and chimpanzees. PLoS One, 2(2): e216, pp. e216.
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Albert, F. W., Shchepina, O., Winter, C., Römpler, H., Teupser, D., Palme, R., Ceglarek, U., Kratzsch, J., Sohr, R., Trut, L. N., Thiery, J., Morgenstern, R., Plyusnina, I. Z., Schöneberg, T., & Pääbo, S. (2008). Phenotypic differences in behavior, physiology and neurochemistry between rats selected for tameness and for defensive aggression towards humans. Hormones and Behavior, 53(3), 413-421.
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Meyer, M., Briggs, A. W., Maricic, T., Höber, B., Höffner, B., Krause, J., Weihmann, A., Pääbo, S., & Hofreiter, M. (2008). From micrograms to picograms: Quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Research, 36(1): e5.
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Somel, M., Creely, H., Franz, H., Müller, U., Lachmann, M., Khaitovich, P., & Pääbo, S. (2008). Human and chimpanzee gene expression differences replicated in mice fed different diets. PLoS ONE, 3(1): e1504.
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Groszer, M., Keays, D. A., Deacon, R. M., de Bono, J. P., Prasad-Mulcare, S., Gaub, S., Baum, M. G., French, C. A., Nicod, J., Coventry, J. A., Enard, W., Fray, M., Brown, S. D. M., Nolan, P. M., Pääbo, S., Channon, K. M., Costa, R. M., Eilers, J., Ehret, G., Rawlins, J. N. P., & Fisher, S. E. (2008). Impaired synaptic plasticity and motor learning in mice with a point mutation implicated in human speech deficits. Current Biology, 18(5), 354-362.
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Hublin, J.-J., Pääbo, S., Derevianko, A. P., Doronichev, V. B., Golovanova, L. V., Friess, M., Froment, A., Hoffmann, A., Kachache, N. E. J., Kullmer, O., Lordkipanidze, D., Moncel, M.-H., Potts, R., Méndez, J. R., Rosas, A., Schmauder, M., Schmitz, R. W., Semal, P., Smith, T. M., Tafuri, M. A., Tattersall, I., Tournepiche, J.-F., Toussaint, M., Vassiliev, S., Vialet, A., Richards, M. P., Radovcic, J., Rak, Y. Z., White, T., & Ziegler, R. (2008). Suggested guidelines for invasive sampling of hominid remains. Journal of Human Evolution, 55(4), 756-757.
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Green, R. E., Malaspinas, A.-S., Krause, J., Briggs, A. W., Johnson, P. L. F., Uhler, C., Meyer, M., Good, J. M., Maricic, T., Stenzel, U., Prüfer, K., Siebauer, M., Burbano, H. A., Ronan, M. T., Rothberg, J. M., Egholm, M., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Wikström, M., Laakkonen, L., Kelso, J., Slatkin, M., & Pääbo, S. (2008). A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell, 134(3), 416-426.
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Khaitovich, P., Lockstone, H. E., Wayland, M. T., Tsang, T. M., Jayatilaka, S. D., Guo, A. J., Zhou, J., Somel, M., Harris, L. W., Holmes, E., Pääbo, S., & Bahn, S. (2008). Metabolic changes in schizophrenia and human brain evolution. Genome Biology, 9(8): R124.
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Farkas, L. M., Haffner, C., Giger, T., Khaitovich, P., Nowick, K., Birchmeier, C., Pääbo, S., & Huttner, W. B. (2008). Insulinoma-associated 1 has a panneurogenic role and promotes the generation and expansion of basal progenitors in the developing mouse neocortex. Neuron, 60(1), 40-55.
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Maricic, T., & Pääbo, S. (2009). Optimization of 454 sequencing library preparation from small amounts of DNA permits sequence determination of both DNA strands. BioTechniques, 46(1), 51-57.
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Somel, M., Franz, H., Yan, Z., Lorenc, A., Guo, S., Giger, T., Kelso, J., Nickel, B., Dannemann, M., Bahn, S., Webster, M. J., Weickert, C. S., Pääbo, S., & Khaitovich, P. (2009). Transcriptional neoteny in the human brain. PNAS - Proceedings of the National Academy of Sciences, 106(14), 5743-5748.
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Albert, F. W., Carlborg, O., Plyusnina, I. Z., Besnier, F., Hedwig, D., Lautenschläger, S., Lorenz, D., McIntosh, J., Neumann, C., Richter, H., Zeising, C., Kozhemyakina, T., Shchepina, O., Kratzsch, J., Trut, L. N., Teupser, D., Thiery, J., Schöneberg, T., Andersson, L., & Pääbo, S. (2009). Genetic architecture of tameness in a rat model of animal domestication. Genetics, 182(2), 541-554.
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Ptak, S. E., Enard, W., Wiebe, V., Hellmann, I., Krause, J., Lachmann, M., & Pääbo, S. (2009). Linkage disequilibrium extends across putative selected sites in FOXP2. Molecular Biology and Evolution, 26(10), 2181-2184.
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Briggs, A. W., Good, J. M., Green, R. E., Krause, J., Maricic, T., Stenzel, U., Lalueza-Fox, C., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Schmitz, R. W., Doronichev, V. B., Golovanova, L. V., de la Rasilla, M., Fortea, J., Rosas, A., & Pääbo, S. (2009). Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science, 325(5938), 318-321.
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Green, R. E., Briggs, A. W., Krause, J., Prüfer, K., Burbano, H. A., Siebauer, M., Lachmann, M., & Pääbo, S. (2009). The Neandertal genome and ancient DNA authenticity. EMBO Journal, 28(17), 2494-2502.
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Briggs, A. W., Good, J. M., Green, R. E., Krause, J., Maricic, T., Stenzel, U., & Pääbo, S. (2009). Primer extension capture: Targeted sequence retrieval from heavily degraded DNA sources (Videodocumentation). Journal of Visualized Experiments, (31).
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Weickert, C. S., Elashof, M., Richards, A. B., Sinclair, D., Bahn, S., Pääbo, S., Khaitovich, P., & Webster, M. J. (2009). Transcriptome analysis of male–female differences in prefrontal cortical development. Molecular Psychiatry, 14(6), 558-561.
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Briggs, A. W., Stenzel, U., Meyer, M., Krause, J., Kircher, M., & Pääbo, S. (2010). Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Special Issue on Synthetic Biology, e87, pp. 1-12.
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Krause, J. *., Briggs, A. W., Kircher, M., Maricic, T., Zwyns, N., Derevianko, A. P., & Pääbo, S. (2010). A complete mtDNA genome of an early modern human from Kostenki, Russia. Current Biology, 20(3), 231-236.
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Krause, J. *., Fu, Q., Good, J. M., Viola, B., Shunkov, M. V., Derevianko, A. P., & Pääbo, S. (2010). The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature, 464(7290), 894-897.
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Prüfer, K., Stenzel, U., Hofreiter, M., Pääbo, S., Kelso, J., & Green, R. E. (2010). Computational challenges in the analysis of ancient DNA. Genome Biology, 11(5): R47.
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Burbano, H. A., Hodges, E., Green, R. E., Briggs, A. W., Krause, J., Meyer, M., Good, J. M., Maricic, T., Johnson, P. L. F., Xuan, Z., Rooks, M., Bhattacharjee, A., Brizuela, L., Albert, F. W., Rasilla, M. d. l., Fortea, J., Rosas, A., Lachmann, M., Hannon, G. J., & Pääbo, S. (2010). Targeted investigation of the Neandertal genome by array-based sequence capture. Science, 328(5979), 723-725.
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Addis, L., Friederici, A. D., Kotz, S. A., Sabisch, B., Barry, J., Richter, N., Ludwig, A. A., Rübsamen, R., Albert, F. W., Pääbo, S., Newbury, D. F., & Monaco, A. P. (2010). A locus for an auditory processing deficit and language impairment in an extended pedigree maps to 12p13.31-q14.3. Genes, Brain & Behavior, 9(6), 545-561.
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Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M.-H.-Y., Hansen, N. F., Durand, E. Y., Malaspinas, A.-S., Jensen, J. D., Marques-Bonet, T., Alkan, C., Prüfer, K., Meyer, M., Burbano, H. A., Good, J. M., Schultz, R., Aximu-Petri, A., Butthoff, A., Höber, B., Höffner, B., Siegemund, M., Weihmann, A., Nusbaum, C., Lander, E. S., Russ, C., Novod, N., Affourtit, J., Egholm, M., Verna, C., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Doronichev, V. B., Golovanova, L. V., Lalueza-Fox, C., Rasilla, M. d. l., Fortea, J., Rosas, A., Schmitz, R. W., Johnson, P. L. F., Eichler, E. E., Falush, D., Birney, E., Mullikin, J. C., Slatkin, M., Nielsen, R., Kelso, J., Lachmann, M., Reich, D., & Pääbo, S. (2010). A draft sequence of the Neandertal genome. Science, 328(5979), 710-722.
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Giger, T., Khaitovich, P., Somel, M., Lorenc, A., Lizano, E., Harris, L. W., Ryan, M. M., Lan, M., Wayland, M. T., Bahn, S., & Pääbo, S. (2010). Evolution of neuronal and endothelial transcriptomes in primates. Genome Biology and Evolution, 2, 284-292.
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Xu, G., He, L., Li, Z., Xu, Y., Li, M., Fu, X., Yan, Z., Yuan, Y., Menzel, C., Li, N., Somel, M., Hu, H., Chen, W., Pääbo, S., & Khaitovich, P. (2010). Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-seq. PLoS Computational Biology, 6(7): e1000843.
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Pulvers, J. N., Bryk, J., Fish, J. L., Wilsch-Bräuninger, M., Arai, Y., Schreier, D., Naumann, R., Helppi, J., Habermann, B., Vogt, J., Nitsch, R., Tóth, A., Enard, W., Pääbo, S., & Huttner, W. B. (2010). Mutations in mouse Aspm (abnormal spindle-like microcephaly associated) cause not only microcephaly but also major defects in the germline. Proceedings of the National Academy of Sciences of the United States of America, 107(38), 16595-16600.
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Maricic, T., Whitten, M., & Pääbo, S. (2010). Multiplexed DNA sequence capture of mitochondrial genomes using PCR products. PLoS ONE, 5(11): e14004, pp. 1-5.
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Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060.
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Gralle, M., Schäfer, I., Seibel, P., & Pääbo, S. (2010). A functional test of Neandertal and modern human mitochondrial targeting sequences. Biochemical and Biophysical Research Communications, 402(4), 747-749.
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Reimers-Kipping, S., Hevers, W., Pääbo, S., & Enard, W. (2011). Humanized Foxp2 specifically affects cortico-basal ganglia circuits. Neuroscience, 175, 75-84.
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Gralle, M., & Pääbo, S. (2011). A comprehensive functional analysis of ancestral human signal peptides. Molecular Biology and Evolution, 28(1), 25-28.
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Albert, F. W., Hodges, E., Jensen, J. D., Besnier, F., Xuan, Z., Rooks, M., Bhattacharjee, A., Brizuela, L., Good, J. M., Green, R. E., Burbano, H. A., Plyusnina, I. Z., Trut, L., Andersson, L., Schöneberg, T., Carlborg, Ö., Hannon, G. J., & Pääbo, S. (2011). Targeted resequencing of a genomic region influencing tameness and aggression reveals multiple signals of positive selection. Heredity, 107(3), 205-214.
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Fischer, A., Prüfer, K., Good, J. M., Halbwax, M., Wiebe, V., André, C., Atencia, R., Mugisha, L., Ptak, S. E., & Pääbo, S. (2011). Bonobos fall within the genomic variation of chimpanzees. PLoS One, 6(6): e21605.
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Reich, D., Patterson, N., Kircher, M., Delfin, F., Nandineni, M. R., Pugach, I., Ko, A.-M.-S., Ko, Y.-C., Jinam, T. A., Phipps, M. E., Saitou, N., Wollstein, A., Kayser, M., Pääbo, S., & Stoneking, M. (2011). Denisova admixture and the first modern human dispersals into southeast Asia and Oceania. The American Journal of Human Genetics, 89(4), 516-528.
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Brawand, D., Soumillon, M., Necsulea, A., Julien, P., Csárdi, G., Harrigan, P., Weier, M., Liechti, A., Aximu-Petri, A., Kircher, M., Albert, F. W., Zeller, U., Khaitovich, P., Grützner, F., Bergmann, S., Nielsen, R., Pääbo, S., & Kaessmann, H. (2011). The evolution of gene expression levels in mammalian organs. Nature, 478(7369), 343-348.
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Nagaraj, N., Wisniewski, J. R., Geiger, T., Cox, J., Kircher, M., Kelso, J., Pääbo, S., & Mann, M. (2011). Deep proteome and transcriptome mapping of a human cancer cell line. Molecular Systems Biology, 7: 548.
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Fu, X., Giavalisco, P., Liu, X., Catchpole, G., Fu, N., Ning, Z.-B., Guo, S., Yan, Z., Somel, M., Pääbo, S., Zeng, R., Willmitzer, L., & Khaitovich, P. (2011). Rapid metabolic evolution in human prefrontal cortex. Proceedings of the National Academy of Sciences of the United States of America, 108(15), 6181-6186.
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Hu, H. Y., Guo, S., Xi, J., Yan, Z., Fu, N., Zhang, X., Menzel, C., Liang, H., Yang, H., Zhao, M., Zeng, R., Chen, W., Pääbo, S., & Khaitovich, P. (2011). MicroRNA expression and regulation in human, chimpanzee, and macaque brains. PLoS Genetics, 7(10): e1002327, pp. 1-14.
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Ka, S., Albert, F. W., Denbow, D. M., Pääbo, S., Siegel, P. B., Andersson, L., & Hallböök, F. (2011). Differentially expressed genes in hypothalamus in relation to genomic regions under selection in two chicken lines resulting from divergent selection for high or low body weight. Neurogenetics, 12(3), 211-221.
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Somel, M., Liu, X., Tang, L., Yan, Z., Hu, H., Guo, S., Jiang, X., Zhang, X., Xu, G., Xie, G., Li, N., Hu, Y., Chen, W., Pääbo, S., & Khaitovich, P. (2011). MicroRNA-driven developmental remodeling in the brain distinguishes humans from other primates. PLoS Biology, 9(12): e1001214.
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Liu, X., Somel, M., Tang, L., Yan, Z., Jiang, X., Guo, S., Yuan, Y., He, L., Oleksiak, A., Zhang, Y., Li, N., Hu, Y., Chen, W., Qiu, Z., Pääbo, S., & Khaitovich, P. (2012). Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques. Genome Research, 22(4), 611-622.
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Burbano, H. A., Green, R. E., Maricic, T., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Kelso, J., Pollard, K. S., Lachmann, M., & Pääbo, S. (2012). Analysis of human accelerated DNA regions using archaic hominin genomes. PLoS One, 7(3): e32877.
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Fu, Q., Rudan, P., Pääbo, S., & Krause, J. (2012). Complete mitochondrial genomes reveal neolithic expansion into Europe. PLoS One, 7(3): e32473.
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Prüfer, K., Munch, K., Hellmann, I., Akagi, K., Miller, J. R., Walenz, B., Koren, S., Sutton, G., Kodira, C., Winer, R., Knight, J. R., Mullikin, J. C., Meader, S. J., Ponting, C. P., Lunter, G., Higashino, S., Hobolth, A., Dutheil, J., Karakoç, E., Alkan, C., Sajjadian, S., Catacchio, C. R., Ventura, M., Marques-Bonet, T., Eichler, E. E., André, C., Atencia, R., Mugisha, L., Junhold, J., Patterson, N., Siebauer, M., Good, J. M., Fischer, A., Ptak, S. E., Lachmann, M., Symer, D. E., Mailund, T., Schierup, M. H., Andrés, A. M., Kelso, J., & Pääbo, S. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature, 486(7404), 527-531.
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Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012). Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One, 7(3): e34131.
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Fietz, S. A., Lachmann, R., Brandl, H., Kircher, M., Samusik, N., Schröder, R., Lakshmanaperumal, N., Henry, I., Vogt, J., Riehn, A., Distler, W., Nitsch, R., Enard, W., Pääbo, S., & Huttner, W. B. (2012). Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proceedings of the National Academy of Sciences of the United States of America, 109(29), 11836-11841.
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Langergraber, K., Pruefer, K., Rowney, C., Boesch, C., Crockford, C., Fawcett, K., Inoue, E., Inoue-Muruyama, M., Mitani, J. C., Muller, M. N., Robbins, M. M., Schubert, G., Stoinski, T. S., Viola, B., Watts, D., Wittig, R., Wrangham, R. W., Zuberbühler, K., Pääbo, S., & Vigilant, L. (2012). Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proceedings of the National Academy of Sciences of the United States of America, 109(39), 15716-15721.
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Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., Filippo, C. d., Sudmant, P. H., Alkan, C., Fu, Q., Do, R., Rohland, N., Tandon, A., Siebauer, M., Green, R. E., Bryc, K., Briggs, A. W., Stenzel, U., Dabney, J., Shendure, J., Kitzman, J., Hammer, M. F., Shunkov, M. V., Derevianko, A. P., Patterson, N., Andrés, A. M., Eichler, E. E., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2012). A high-coverage genome sequence from an archaic Denisovan individual. Science, 338(6104), 222-226.
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Albert, F. W., Somel, M., Carneiro, M., Aximu-Petri, A., Halbwax, M., Thalmann, O., Blanco-Aguiar, J. A., Plyusnina, I. Z., Trut, L., Villafuerte, R., Ferrand, N., Kaiser, S., Jensen, P., & Pääbo, S. (2012). A comparison of brain gene expression levels in domesticated and wild animals. PLoS Genetics, 8(9): e1002962.
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Sankararaman, S., Patterson, N., Li, H., Pääbo, S., & Reich, D. (2012). The date of interbreeding between Neandertals and modern humans. PLoS Genetics, 8(10): e1002947.
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Maricic, T., Günther, V., Georgiev, O., Gehre, S., Curlin, M., Schreiweis, C., Naumann, R., Burbano, H. A., Meyer, M., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Gajovic, S., Kelso, J., Enard, W., Schaffner, W., & Pääbo, S. (2013). A recent evolutionary change affects a regulatory element in the human FOXP2 gene. Molecular Biology and Evolution, 30(4), 844-852.
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Good, J. M., Wiebe, V., Albert, F., Burbano, H. A., Kircher, M., Green, R. E., Halbwax, M., André, C., Atencia, R., Fischer, A., & Pääbo, S. (2013). Comparative population genomics of the ejaculate in humans and the great apes. Molecular Biology and Evolution, 30(4), 964-976.
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Fu, Q., Mittnik, A., Johnson, P. L., Bos, K., Lari, M., Bollongino, R., Sun, C., Giemsch, L., Schmitz, R., Burger, J., Ronchitelli, A. M., Martini, F., Cremonesi, R. G., Svoboda, J., Bauer, P., Caramelli, D., Castellano, S., Reich, D., Pääbo, S., & Krause, J. *. (2013). A revised timescale for human evolution based on ancient mitochondrial genomes. Current Biology, 23(7), 553-559.
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Ka, S., Markljung, E., Ring, H., Albert, F. W., Harun-Or-Rashid, M., Wahlberg, P., Garcia-Roves, P. M., Zierath, J. R., Denbow, D. M., Pääbo, S., Siegel, P. B., Andersson, L., & Hallbook, F. (2013). Expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight. Physiological Genomics, 45(9), 367-376.
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Kuhlwilm, M., Davierwala, A., & Pääbo, S. (2013). Identification of putative target genes of the transcription factor RUNX2. PLoS One, 8(12): e83218.
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Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D. L., Germonpré, M. B., Sablin, M. V., López-Giráldez, F., Domingo-Roura, X., Napierala, H., Uerpmann, H.-P., Loponte, D. M., Acosta, A. A., Giemsch, L., Schmitz, R. W., Worthington, B., Buikstra, J. E., Druzhkova, A., Graphodatsky, A. S., Ovodov, N. D., Wahlberg, N., Freedman, A. H., Schweizer, R. M., Koepfli, K.-P., Leonard, J. A., Meyer, M., Krause, J., Pääbo, S., Green, R. E., & Wayne, R. K. (2013). Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science, 342(6160), 871-874.
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The SIGMA Type 2 Diabetes Consortium, including authors, Prüfer, K., Sawyer, S., Stenzel, U., Kelso, J., Pääbo, S., & and others (2014). Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature, 506, 97-101.
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Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., Li, H., Mallick, S., Dannemann, M., Fu, Q., Kircher, M., Kuhlwilm, M., Lachmann, M., Meyer, M., Ongyerth, M., Siebauer, M. F., Theunert, C., Tandon, A., Moorjani, P., Pickrell, J., Mullikin, J. C., Vohr, S. H., Green, R. E., Hellmann, I., Johnson, P. L. F., Blanche, H., Cann, H., Kitzman, J. O., Shendure, J., Eichler, E. E., Lein, E. S., Bakken, T. E., Golovanova, L. V., Doronichev, V. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2014). The complete genome sequence of a Neanderthal from the Altai Mountains. Nature, 505(7481), 43-49.
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Meyer, M., Fu, Q., Ayinuer-Petri, A., Glocke, I., Nickel, B., Arsuaga, J.-L., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., & Pääbo, S. (2014). A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature, 505(7483), 403-406.
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Skoglund, P., Northoff, B. H., Shunkov, M. V., Derevianko, A. P., Pääbo, S., Krause, J., & Jakobsson, M. (2014). Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. Proceedings of the National Academy of Sciences of the United States of America, 111(6), 2229-2234.
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Sankararaman, S., Mallick, S., Dannemann, M., Prüfer, K., Kelso, J., Pääbo, S., Patterson, N., & Reich, D. (2014). The genomic landscape of Neanderthal ancestry in present-day humans. Nature, 507(7492), 354-357.
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Khrameeva, E. E., Bozek, K., He, L., Yan, Z., Jiang, X., Wei, Y., Tang, K., Gelfand, M. S., Prüfer, K., Kelso, J., Pääbo, S., Giavalisco, P., Lachmann, M., & Khaitovich, P. (2014). Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications, 5: 3584.
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Pääbo, S. (2014). The human condition: A molecular approach (Review). Cell, 157(1), 216-226.
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Castellano, S., Parra, G., Sánchez-Quinto, F. A., Racimo, F., Kuhlwilm, M., Kircher, M., Sawyer, S., Fu, Q., Heinze, A., Nickel, B., Dabney, J., Siebauer, M. F., White, L., Burbano, H. A., Renaud, G., Stenzel, U., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Shunkov, M. V., Derevianko, A. P., Viola, B., Meyer, M., Kelso, J., Andrés, A. M., & Pääbo, S. (2014). Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America, 111(18), 6666-6671.
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Gokhman, D., Lavi, E., Prüfer, K., Fraga, M. F., Riancho, J. A., Kelso, J., Pääbo, S., Meshorer, E., & Carmel, L. (2014). Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science, 344(6183), 523-527.
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Lindskog, C., Kuhlwilm, M., Davierwala, A., Fu, N., Hegde, G., Uhlén, M., Navani, S., Pääbo, S., & Pontén, a. F. (2014). Analysis of candidate genes for lineage-specific expression changes in humans and primates. Journal of Proteome Research, 13(8), 3596-3606.
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Wunderlich, S., Kircher, M., Vieth, B., Haase, A., Merkert, S., Beier, J., Göhring, G., Glage, S., Schambach, A., Curnow, E. C., Pääbo, S., Martin, U., & Enard, W. (2014). Primate iPS cells as tools for evolutionary analyses. Stem Cell Research, 12(3), 622-629.
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Schreiweis, C., Bornschein, U., Burguière, E., Kerimoglu, C., Schreiter, S., Dannemann, M., Goyal, S., Rea, E., French, C. A., Puliyadi, R., Groszer, M., Fisher, S. E., Mundry, R., Winter, C., Hevers, W., Pääbo, S., Enard, W., & Graybiel, A. M. (2014). Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance. Proceedings of the National Academy of Sciences of the United States of America, 111(39), 14253-14258.
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Fu, Q., Hajdinjak, M., Moldovan, O., Constantin, S., Mallick, S., Skoglund, P., Patterson, N., Rohland, N., Lazaridis, I., Nickel, B., Viola, B., Prüfer, K., Meyer, M., Kelso, J., Reich, D., & Pääbo, S. (2015). An early modern human from Romania with a recent Neanderthal ancestor. Nature, 524(7564), 216-219.
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Pääbo, S. (2015). The diverse origins of the human gene pool (Commentary). Nature Reviews Genetics, 16, 313-314.
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Sawyer, S., Renaud, G., Viola, B., Hublin, J.-J., Gansauge, M.-T., Shunkov, M. V., Derevianko, A. P., Prüfer, K., Kelso, J., & Pääbo, S. (2015). Nuclear and mitochondrial DNA sequences from two Denisovan individuals. Proceedings of the National Academy of Sciences of the United States of America, 112(51), 15696-15700.
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Camp, J. G., Badsha, F., Florio, M., Kanton, S., Gerber, T., Wilsch-Bräuninger, M., Lewitus, E., Sykes, A., Hevers, W., Lancaster, M., Knoblich, J. A., Lachmann, R., Pääbo, S., Huttner, W. B., & Treutlein, B. (2015). Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. Proceedings of the National Academy of Sciences of the United States of America, 112(51), 15672-15677.
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Hammerschmidt, K., Schreiweis, C., Minge, C., Pääbo, S., Fischer, J., & Enard, W. (2015). A humanized version of Foxp2 does not affect ultrasonic vocalization in adult mice. Genes, Brain and Behavior, 14(8), 583-590.
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Weyer, S., & Pääbo, S. (2016). Functional analyses of transcription factor binding sites that differ between present-day and archaic humans. Molecular Biology and Evolution, 33(2), 316-322.
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Kuhlwilm, M., Gronau, I., Hubisz, M. J., de Filippo, C., Prado-Martinez, J., Kircher, M., Fu, Q., Burbano, H. A., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Marques-Bonet, T., Andrés, A. M., Viola, B., Pääbo, S., Meyer, M., Siepel, A., & Castellano, S. (2016). Ancient gene flow from early modern humans into Eastern Neanderthals. Nature, 530(7591), 429-433.
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Meyer, M., Arsuaga, J.-L., de Filippo, C., Nagel, S., Aximu-Petri, A., Nickel, B., Martínez, I., Gracia, A., Bermúdez de Castro, J. M., Carbonell, E., Viola, B., Kelso, J., Prüfer, K., & Pääbo, S. (2016). Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins. Nature, 531(7595), 504-507.
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Brown, S., Higham, T., Slon, V., Pääbo, S., Meyer, M., Douka, K., Brock, F., Comeskey, D., Procopio, N., Shunkov, M., Derevianko, A., & Buckley, M. (2016). Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis. Scientific Reports, 6: 23559.
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Li, Q., Guo, S., Jiang, X., Bryk, J., Naumann, R., Enard, W., Tomita, M., Sugimoto, M., Khaitovich, P., & Pääbo, S. (2016). Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development. Proceedings of the National Academy of Sciences of the United States of America, 113(19), 5358-5363.
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Krause, J. *., & Pääbo, S. (2016). Genetic time travel. Genetics, 203(1), 9-12.
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Nissen, J. D., Lykke, K., Bryk, J., Stridh, M. H., Zaganas, I., Skytt, D. M., Schousboe, A., Bak, L. K., Enard, W., Pääbo, S., & Waagepetersen, H. S. (2017). Expression of the human isoform of glutamate dehydrogenase, hGDH2, augments TCA cycle capacity and oxidative metabolism of glutamate during glucose deprivation in astrocytes. Glia, 65(3), 474-488.
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Mafessoni, F., Grote, S., de Filippo, C., Slon, V., Kolobova, K. A., Viola, B., Markin, S. V., Chintalapati, M., Peyrégne, S., Skov, L., Skoglund, P., Krivoshapkin, A. I., Derevianko, A. P., Meyer, M., Kelso, J., Peter, B., Prüfer, K., & Pääbo, S. (2020). A high-coverage Neandertal genome from Chagyrskaya Cave. Proceedings of the National Academy of Sciences, 117(26), 15132-15136.
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Zeberg, H., & Pääbo, S. (2020). The major genetic risk factor for severe COVID-19 is inherited from Neanderthals. Nature, 587(7835), 610-612.
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Maricic, T., Nickel, O., Ayinuer-Petri, A., Essel, E., Gansauge, M.-T., Kanis, P., Macak, D., Riesenberg, S., Bokelmann, L., Zeberg, H., Meyer, M., Borte, S., & Pääbo, S. (2020). A direct RT-qPCR approach to test large numbers of individuals for SARS-CoV-2. PLoS One, 15(12): e0244824.
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Zeberg, H., & Pääbo, S. (2021). A genomic region associated with protection against severe COVID-19 is inherited from Neandertals. Proceedings of the National Academy of Sciences, 118(9): e2026309118.
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Bokelmann, L., Nickel, O., Maricic, T., Pääbo, S., Meyer, M., Borte, S., & Riesenberg, S. (2021). Point-of-care bulk testing for SARS-CoV-2 by combining hybridization capture with improved colorimetric LAMP. Nature Communications, 12(1): 1467.
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Maricic, T., Helmbrecht, N., Riesenberg, S., Macak, D., Kanis, P., Lackner, M., Pugach-Matveeva, A. D., & Pääbo, S. (2021). Comment on “Reintroduction of the archaic variant of NOVA1 in cortical organoids alters neurodevelopment”. Science, 374(6565), 269.
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Massilani, D., Morley, M. W., Mentzer, S. M., Aldeias, V., Vernot, B., Miller, C., Stahlschmidt, M., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Conard, N. J., Wurz, S., Henshilwood, C. S., Vasquez, J., Essel, E., Nagel, S., Richter, J., Nickel, B., Roberts, R. G., Pääbo, S., Slon, V., Goldberg, P., & Meyer, M. (2022). Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments. Proceedings of the National Academy of Sciences, 119(1): e2113666118.
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Coppo, L., Mishra, P., Siefert, N., Holmgren, A., Pääbo, S., & Zeberg, H. (2022). A substitution in the glutathione reductase lowers electron leakage and inflammation in modern humans. Science Advances, 8(1): eabm1148.
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Mora-Bermúdez, F., Kanis, P., Macak, D., Peters, J., Naumann, R., Xing, L., Sarov, M., Winkler, S., Oegema, C. E., Haffner, C., Wimberger, P., Riesenberg, S., Maricic, T., Huttner, W. B., & Pääbo, S. (2022). Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development. Science Advances, 8: eabn7702.
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Haeggström, S., Ingelman-Sundberg, M., Pääbo, S., & Zeberg, H. (2022). The clinically relevant CYP2C8*3 and CYP2C9*2 haplotype is inherited from Neandertals. The Pharmacogenomics Journal, 22, 247-249.
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Pinson, A., Xing, L., Namba, T., Kalebic, N., Peters, J., Oegema, C. E., Traikov, S., Reppe, K., Riesenberg, S., Maricic, T., Derihaci, R., Wimberger, P., Pääbo, S., & Huttner, W. B. (2022). Human TKTL1 implies greater neurogenesis in frontal neocortex of modern humans than Neanderthals. Science, 377(6611): eabl6422, pp. 1170.
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Murat, F., Mbengue, N., Winge, S. B., Trefzer, T., Leushkin, E., Sepp, M., Cardoso-Moreira, M., Schmidt, J., Schneider, C., Mößinger, K., Brüning, T., Lamanna, F., Belles, M. R., Conrad, C., Kondova, I., Bontrop, R., Behr, R., Khaitovich, P., Pääbo, S., Marques-Bonet, T., Grützner, F., Almstrup, K., Schierup, M. H., & Kaessmann, H. (2023). The molecular evolution of spermatogenesis across mammals. Nature, 613, 308-316.
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Lackner, M., Helmbrecht, N., Pääbo, S., & Riesenberg, S. (2023). Detection of unintended on-target effects in CRISPR genome editing by DNA donors carrying diagnostic substitutions. Nucleic Acids Research, 51(5): gkac1254.
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Bornschein, U., Zeberg, H., Enard, W., Hevers, W., & Pääbo, S. (2023). Functional dissection of two amino acid substitutions unique to the human FOXP2 protein. Scientific Reports, 13(1): 3747.
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Ågren, R., Patil, S., Zhou, X., Sahlholm, K., Pääbo, S., & Zeberg, H. (2023). Major genetic risk factors for Dupuytren's disease are inherited from Neandertals. Molecular Biology and Evolution, 40(6): msad130.
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Riesenberg, S., Kanis, P., Macak, D., Wollny, D., Düsterhöft, D., Kowalewski, J., Helmbrecht, N., Maricic, T., & Pääbo, S. (2023). Efficient high-precision homology-directed repair-dependent genome editing by HDRobust. Nature Methods, 20, 1388-1399.
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Zeberg, H., Jakobsson, M., & Pääbo, S. (2024). The genetic changes that shaped Neandertals, Denisovans, and modern humans. Cell, 187, 1047-1058.
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Helmbrecht, N., Lackner, M., Maricic, T., & Pääbo, S. (2024). The modern human aryl hydrocarbon receptor is more active when ancestralized by genome editing. Proceedings of the National Academy of Sciences, 121(22): e2402159121.
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Jacobs, Z., Zavala, E. I., Li, B., O’Gorman, K., Shunkov, M. V., Kozlikin, M. B., Derevianko, A. P., Uliyanov, V. A., Goldberg, P., Agadjanian, A. K., Vasiliev, S. K., Brink, F., Peyrégne, S., Slon, V., Pääbo, S., Kelso, J., Meyer, M., & Roberts, R. G. (2025). Pleistocene chronology and history of hominins and fauna at Denisova Cave. Nature Communications, 16: 4738.
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Fu, Q., Cao, P., Dai, Q., Bennett, E. A., Feng, X., Yang, M. A., Ping, W., Pääbo, S., & Ji, Q. (2025). Denisovan mitochondrial DNA from dental calculus of the >146,000-year-old Harbin cranium (advance online). Cell, 188.
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Macak, M., Lee, S.-Y.-., Nyman, T., Ampah-Korsah, H., Strandback, E., Pääbo, S., & Zeberg, H. (in press). Muscle AMP deaminase activity was lower in Neandertals than in modern humans. Nature Communications.

Ju, X.-C., Lee, S.-Y., Ågren, R., Machado, L., Xing, J., Azama, C., Roy, M., Endo, T., Huttner, W., Siepel, A., Fukunaga, I., Zeberg, H., & Pääbo, S. (in press). The activity and expression of adenylosuccinate lyase was reduced during modern human evolution, affecting brain and behavior. Proceedings of the National Academy of Sciences of the United States of America.

Pääbo, S. (2014). Neanderthal man: In search of lost genomes (Translated into 21 languages). New York: Basic Books.
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Pääbo, S. (1988). The mummy of Ramses II reconsidered: Book review of "La Momie de Ramsès II: contribution scientifique à l'égyptologie" sous la dir. [de] Lionel Balout.. Orientalische Literaturzeitung, 83(4), 389-394.
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Pääbo, S. (1991). Molecular systematics at the crossroads: Book review of "Molecular systematics" ed. by D.M. Hillis and C. Moritz. Trends in Genetics, 7(8), 272.
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Pääbo, S. (1993). Molecular Anthropology? Book review of "Molecular applications in biological anthropology" ed. by Eric J. Devor. Trends in Genetics, 9(7), 255.
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Pääbo, S. (1997). A revolution in evolution: Book review of "Patterns in evolution: The new molecular view" by Roger Lewin. Nature, 386(6624), 456.
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Hellerström, C., Andersson, A., Björkén, C., Eriksson, U., Groth, C., Gunnarsson, R., Hardstedt, C., Lundgren, G., Peterson, B., Pääbo, S., Swenne, I., Agren, A., & Östman, J. (1980). Isolation, culture and transplantation of human pancreatic islets. In I. Cumming, J. Funder, & F. A. Mendelsohn (Eds.), Endocrinology 1980: Proceedings of the VI International Congress of Endocrinology, Melbourne, Australia, February 10-16, 1980 (pp. 368-372). Amsterdam [u.a.]: Elsevier/North Holland.
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Kämpe, O., Larhammer, D., Wiman, K., Schenning, L., Claesson, L., Gustafsson, K., Pääbo, S., Hyldig-Nielsen, J., Rask, L., & Peterson, P. (1983). Molecular analyses of MHC antigens. In E. Möller, & G. Möller (Eds.), Genetics of the immune response. New York: Plenum Pr.
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Pääbo, S. (1986). DNA is preserved in ancient Egyptian mummies. In A. David (Ed.), Science in Egyptology (pp. 383-388). Manchester: Manchester Univ. Pr.
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Pääbo, S. (1990). Amplifying ancient DNA. In M. A. Innis (Ed.), PCR protocols: A guide to methods and applications (pp. 159-166). San Diego: Academic Pr.
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Simon, C., Pääbo, S., Kocher, T., & Wilson, A. (1990). Evolution of mitochondrial ribosomal RNA in insects as shown by the polymerase chain reaction. In M. T. Clegg, & S. J. O'Brian (Eds.), Molecular evolution: Proceedings of a UCLA Colloquium, held at Lake Tahoe, California, February 27-March 6, 1989 (pp. 235-244). New York [u.a.]: Wiley-Liss.
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Goloubinoff, P., Pääbo, S., & Wilson, A. C. (1991). Molecular characterization of ancient maize: Potentials and pitfalls. In S. Johannessen, & C. Hastorf (Eds.), Corn and culture in the prehistoric New World (pp. 113-125). Boulder: Westview Pr.
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Pääbo, S., & Di Renzo, A. (1993). A molecular approach to the study of Egyptian history. In W. V. Davies, & R. Walker (Eds.), Biological anthropology and the study of ancient Egypt (pp. 86-90). London: British Museum Pr.
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Höss, M., Handt, O., & Pääbo, S. (1994). Recreating the past by PCR. In K. B. Mullis, F. Ferré, & R. A. Gibbs (Eds.), The Polymerase Chain Reaction (pp. 257-264). Boston [u.a.]: Birkhäuser.
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Höss, M., & Pääbo, S. (1993). Ancient DNA. In McGraw-Hill Yearbook of Science (pp. 114-116). McGraw-Hill.
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Mörl, M., Dörner, M., & Pääbo, S. (1994). Direct purification of tRNAs using oligonucleotides coupled to magnetic beads. In M. Uhlen, E. Horners, & O. Olsvik (Eds.), Advances in biomagnetic separation (pp. 107-111). Natick, MA: Eaton Publ.
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Pääbo, S. (2000). Gene, Sprache und die Besiedelung des europäischen Nordens Europas - Zum Ursprung von Populationen aus molekulargenetischer Sicht. In Max-Planck-Gesellschaft (Ed.), Wie entstehen neue Qualitäten in komplexen Systemen? 50 Jahre Max-Planck-Gesellschaft 1948-1998. Dokumentation des Symposiums zum 50jährigen Gründungsjubiläum der Max-Planck-Gesellschaft am 18. Dezember 1998 in Berlin (pp. 49-56). Göttingen: Vandenhoeck & Ruprecht.
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Poinar, H. N., & Pääbo, S. (Eds.). (2001). DNA. In D. E. G. Briggs, & P. R. Crowther (Eds.), Palaeobiology II (pp. 241-245). Oxford: Blackwell Science.
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Pääbo, S. (2002). Die Wurzeln der Menschheit - die Evolution des humanen Genoms. In M. Lessl, & G. Stock (Eds.), Die Architektur des Lebens - über Gene, Organismen und Personen: Symposium anlässlich des 10-jährigen Bestehens der Schering-Forschungsgesellschaft, November 2001 (pp. 39-72). Berlin: Springer.
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Rabeder, G., Hofreiter, M., Nagel, D., Pääbo, S., & Withalm, G. (2002). Die neue Taxonomy der Höhlenbären. In W. Rosendahl, M. Morgan, & M. Correa (Eds.), Cave Bear Researches (pp. 68-69). München: Verband der Dt. Höhlen- und Karstforscher.
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Pääbo, S. (2004). Ancient DNA. In Krude, T. (Ed.), DNA - Changing Science and Society (pp. 68-87). Cambridge: Cambridge University Press.
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Pääbo, S. (2005). Was ist Forschung? In H. Braun, & D. Grömling (Eds.), Entwurfsatlas Forschungs- und Technologiebau (pp. 10-11). Basel: Birkhäuser.
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Serre, D., Schmitz, R. W., & Pääbo, S. (2006). Genetic analyses of the Neanderthals from the Feldhofer Caves. In Schmitz, Ralf W. (Ed.), Neanderthal 1856-2006 (pp. 329-333). Mainz: von Zabern.
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Serre, D., Langaney, A., Chech, M., Teschler-Nicola, M., Paunovic, M., Mennecier, P., Hofreiter, M., Possnert, G., & Pääbo, S. (2006). No evidence of Neandertal mtDNA contribution to early modern humans. In M. Teschler-Nicola (Ed.), Early modern humans and the Moravian Gate: Mladec caves and their remains (pp. 491-503). Berlin: Springer.
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Serre, D., & Pääbo, S. (2006). The fate of European Neanderthals. In Katerina Harvati & Terry Harrison (Ed.), Neanderthals revisited: new approaches and perspectives (pp. 211-219). Berlin: Springer.
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Dabney, J., Meyer, M., & Pääbo, S. (2014). Ancient DNA damage. In E. C. Friedberg, S. J. Elledge, A. R. Lehmann, T. Lindahl, & M. Muzi-Falconi (Eds.), DNA Repair, Mutagenesis, and Other Responses to DNA Damage: A subject collection from Cold Spring Harbor Perspectives in Biology (pp. 19-26). New York: Cold Spring Harbor Laboratory Pr.
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Viola, B., & Pääbo, S. (2013). What's new in Central Asia? In M. V. Shunkov, & V. Molodin (Eds.), Fundamental'nye problemy archeologii anthropogii i etnografii evrazii: k 70. letiju akademika A. P. Derevjanko = Basic Issues in Archaeology, Anthropology and Ethnography of Eurasia: Festschrift on the occasion of Anatoly Derevianko's 70th birthday (pp. 555-565). Novosibirsk: SB RAS Press.
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Pääbo, S. (2015). The contribution of ancient hominin genomes from Siberia to our understanding of human evolution. In Herald of the Russian Academy of Sciences 85 (5): Papers by Laureates of the 2014 Lomonosov Grand Gold Medal of the Russian Academy of Sciences (pp. 392-396). Moscow: IAPC «Nauka/Interperiodica».
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Pääbo, S. (2015). Genomy drevnich gominin iz Sibiri = Genomes of ancient hominins from Siberia. In Vestnik Rossijskoj Akademii Nauk 85 (10): Doklady Laureatov Bol'shoj Zolotoj Medali imeni M. V. Lomonosova Rossijskoj Akademii Nauk 2014 goda (pp. 879-884). Moscow: Nauka.
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Pääbo, S. (2015). Dorcas Cummings Lecture: The Genetic Legacy of Neanderthals. In T. Grodzicker, D. Stewart, & B. Stillman (Eds.), 21st Century Genetics: Genes at Work (pp. 291-294). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
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Pääbo, S. (2019). Lessons from our inner Neanderthal: How extinct hominins live on in people today; the genomes of now-extinct archaic humans can help us understand more about what makes us modern-day humans truly unique. In S. Shuzhen, & B. Seet (Eds.), Sydney Brenner's 10-on-10: the chronicles of evolution (pp. 129-137). Singapore: Wildtype Books.
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