Max-Planck-Institut
Contact
Department of Evolutionary Genetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig
phone: +49 341 3550 - 500
e-mail: mittag@[>>> Please remove the brackets! <<<]eva.mpg.de
Publications
2019
| Bokelmann, L., Hajdinjak, M., Peyrégne, S., Brace, S., Essel, E., de Filippo, C., Glocke, I., Grote, S., Mafessoni, F., Nagel, S., Kelso, J., Prüfer, K., Vernot, B., Barnes, I., Pääbo, S., Meyer, M., & Stringer, C. (2019). A genetic analysis of the Gibraltar Neanderthals. Proceedings of the National Academy of Sciences,116(31), 15610-15615. DOI BibTeX Endnote | |
| Cauret, C. M. S., Gansauge, M.-T., Tupper, A. S., Furman, B. L. S., Knytl, M., Song, X., Greenbaum, E., Meyer, M., & Evans, B. J. (2019). Developmental systems drift and the drivers of sex chromosome evolution (advance online). Molecular Biology and Evolution. DOI BibTeX Endnote | |
| Dabney, J., & Meyer, M. (2019). Extraction of highly degraded DNA from ancient bones and teeth. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
Devièse, T., Massilani, D., Yi, S., Comeskey, D., Nagel, S., Nickel, B., Ribechini, E., Lee, J., Tseveendorj, D., Gunchinsuren, B., Meyer, M., Pääbo, S., & Higham, T. (2019). Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia. Nature Communications,10(10): 274.  Open Access DOI BibTeX Endnote | |
| Douka, K., Slon, V., Jacobs, Z., Ramsey, C. B., Shunkov, M. V., Derevianko, A. P., Mafessoni, F., Kozlikin, M. B., Li, B., Grün, R., Comeskey, D., Devièse, T., Brown, S., Viola, B., Kinsley, L., Buckley, M., Meyer, M., Roberts, R. G., Pääbo, S., Kelso, J., & Higham, T. (2019). Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave. Nature,565(7741), 640-644. DOI BibTeX Endnote | |
| Evans, B. J., Gansauge, M.-T., Stanley, E. L., Furman, B. L. S., Cauret, C. M. S., Ofori-Boateng, C., Gvoždík, V., Streicher, J. W., Greenbaum, E., Tinsley, R. C., Meyer, M., & Blackburn, D. C. (2019). Xenopus fraseri: Mr. Fraser, where did your frog come from? PLoS One,14(9): e0220892. Open Access DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2019). A method for single-stranded ancient DNA library preparation. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
| Glocke, I. (2019). Improving methods for the extraction of DNA from ancient bones, teeth and sediments. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Korlević, P., & Meyer, M. (2019). Pretreatment: Removing DNA contamination from ancient bones and teeth using sodium hypochlorite and phosphate. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
| Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., Alex, N., Broomandkhoshbacht, N., Candilio, F., Callan, K., Cheronet, O., Culleton, B. J., Ferry, M., Fernandes, D., Freilich, S., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, É., Harper, T. K., Keating, D., Lawson, A. M., Mah, M., Mandl, K., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zalzala, F., Zhang, Z., Akhatov, G., Bagashev, A. N., Bagnera, A., Baitanayev, B., Bendezu-Sarmiento, J., Bissembaev, A. A., Bonora, G. L., Chargynov, T. T., Chikisheva, T., Dashkovskiy, P. K., Derevianko, A., Dobeš, M., Douka, K., Dubova, N., Duisengali, M. N., Enshin, D., Epimakhov, A., Fribus, A. V., Fuller, D., Goryachev, A., Gromov, A., Grushin, S. P., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Krygin, A. P., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Mamedov, A. M., Mamirov, T. B., Meiklejohn, C., Merrett, D. C., Micheli, R., Mochalov, O., Mustafokulov, S., Nayak, A., Pettener, D., Potts, R., Razhev, D., Rykun, M., Sarno, S., Savenkova, T. M., Sikhymbaeva, K., Slepchenko, S. M., Soltobaev, O. A., Stepanova, N., Svyatko, S., Tabaldiev, K., Teschler-Nicola, M., Tishkin, A. A., Tkachev, V. V., Vasilyev, S., Velemínský, P., Voyakin, D., Yermolayeva, A., Zahir, M., Zubkov, V. S., Zubova, A., Shinde, V. S., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D. J., Frachetti, M., Pinhasi, R., & Reich, D. (2019). The formation of human populations in South and Central Asia. Science,365(6457): eaat7487. DOI BibTeX Endnote | |
| Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., Conard, N. J., Kind, C. J., Posth, C., Krause, J., Abrams, G., Bonjean, D., Di Modica, K., Toussaint, M., Kelso, J., Meyer, M., Pääbo, S., & Prüfer, K. (2019). Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science Advances,5(6): eaaw5873. Open Access DOI BibTeX Endnote | |
| Shinde, V., Narasimhan, V. M., Rohland, N., Mallick, S., Mah, M., Lipson, M., Nakatsuka, N., Adamski, N., Broomandkhoshbacht, N., Ferry, M., Lawson, A. M., Michel, M., Oppenheimer, J., Stewardson, K., Jadhav, N., Kim, Y. J., Chatterjee, M., Munshi, A., Panyam, A., Waghmare, P., Yadav, Y., Patel, H., Kaushik, A., Thangaraj, K., Meyer, M., Patterson, N., Rai, N., & Reich, D. (2019). An ancient Harappan genome lacks ancestry from Steppe pastoralists or Iranian farmers. Cell,179(3), 729-735.e10. DOI BibTeX Endnote |
2018
| de Filippo, C., Meyer, M., & Prüfer, K. (2018). Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences. BMC Biology,16: 121. Open Access DOI BibTeX Endnote | |
| Hajdinjak, M., Fu, Q., Hübner, A., Petr, M., Mafessoni, F., Grote, S., Skoglund, P., Narasimham, V., Rougier, H., Crevecoeur, I., Semal, P., Soressi, M., Talamo, S., Hublin, J.-J., Gušic, I., Kucan, Ž., Rudan, P., Golovanova, L. V., Doronichev, V. B., Posth, C., Krause, J., Korlevic, P., Nagel, S., Nickel, B., Slatkin, M., Patterson, N., Reich, D., Prüfer, K., Meyer, M., Pääbo, S., & Kelso, J. (2018). Reconstructing the genetic history of late Neanderthals. Nature,555(7698), 652-656. DOI BibTeX Endnote | |
| Hernandez-Rodriguez, J., Arandjelovic, M., Lester, J. D., de Filippo, C., Weihmann, A., Meyer, M., Angedakin, S., Casals, F., Navarro, A., Vigilant, L., Kühl, H. S., Langergraber, K., Boesch, C., Hughes, D., & Marques-Bonet, T. (2018). The impact of endogenous content, replicates and pooling on genome capture from faecal samples. Molecular Ecology Resources,18(2), 319-333. Open Access DOI BibTeX Endnote | |
| Korlević, P. (2018). Development of sample preparation techniques for the molecular analysis of ancient skeletal remains. PhD Thesis, Universität Leipzig, Leipzig. BibTeX Endnote | |
| Korlevic, P., Talamo, S., & Meyer, M. (2018). A combined method for DNA analysis and radiocarbon dating from a single sample. Scientific Reports,8(1): 4127. Open Access DOI BibTeX Endnote | |
| Loosdrecht, M. v. d., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Ayinuer-Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., Amzazi, S., Hublin, J.-J., Pääbo, S., Schiffels, S., Meyer, M., Haak, W., Jeong, C., & Krause, J. (2018). Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science,360(6388), 548-552. DOI BibTeX Endnote | |
| Rohland, N., Glocke, I., Ayinuer-Petri, A., & Meyer, M. (2018). Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing. Nature Protocols,13, 2447-2461. DOI BibTeX Endnote | |
| Slon, V., Mafessoni, F., Vernot, B., de Filippo, C., Grote, S., Viola, T. B., Hajdinjak, M., Peyrégne, S., Nagel, S., Brown, S., Douka, K., Higham, T., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Kelso, J., Meyer, M., Prüfer, K., & Pääbo, S. (2018). The genome of the offspring of a Neanderthal mother and a Denisovan father. Nature,561(7721), 113-116. DOI BibTeX Endnote |
2017
| Devièse, T., Karavanic, I., Comeskey, D., Kubiak, C., Korlevic, P., Hajdinjak, M., Radovic, S., Procopio, N., Buckley, M., Pääbo, S., & Higham, T. (2017). Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition. Proceedings of the National Academy of Sciences of the United States of America,114(40), 10606-10611. Open Access DOI BibTeX Endnote | |
| Douka, K., Slon, V., Stringer, C., Potts, R., Hübner, A., Meyer, M., Spoor, F., Pääbo, S., & Higham, T. (2017). Direct radiocarbon dating and DNA analysis of the Darra-i-Kur (Afghanistan) human temporal bone. Journal of Human Evolution,107, 86-93. DOI BibTeX Endnote | |
| Froese, D., Stiller, M., Heintzman, P. D., Reyes, A. V., Zazula, G. D., Soares, A. E. R., Meyer, M., Hall, E., Jensen, B. J. L., Arnold, L. J., MacPhee, R. D. E., & Shapiro, B. (2017). Fossil and genomic evidence constrains the timing of bison arrival in North America. Proceedings of the National Academy of Sciences of the United States of America,114(13), 3457-3462. DOI BibTeX Endnote | |
| Gansauge, M.-T. (2017). Method improvement for the preparation of ancient DNA seqencing libraries. PhD Thesis, Universität Leipzig, Leipzig. BibTeX Endnote | |
| Gansauge, M.-T., Gerber, T., Glocke, I., Korlevic, P., Lippik, L., Nagel, S., Riehl, L. M., Schmidt, A., & Meyer, M. (2017). Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase. Nucleic Acids Research,45(10): e79. Open Access DOI BibTeX Endnote | |
| Glocke, I., & Meyer, M. (2017). Extending the spectrum of DNA sequences retrieved from ancient bones and teeth. Genome Research,27, 1230-1237. DOI BibTeX Endnote | |
| Meyer, M., Palkopoulou, E., Baleka, S., Stiller, M., Penkman, K. E. H., Alt, K. W., Ishida, Y., Mania, D., Mallick, S., Meijer, T., Meller, H., Nagel, S., Nickel, B., Ostritz, S., Rohland, N., Schauer, K., Schüler, T., Roca, A. L., Reich, D., Shapiro, B., & Hofreiter, M. (2017). Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution. eLife, e25413. DOI BibTeX Endnote | |
| Prüfer, K., Filippo, C. d., Grote, S., Mafessoni, F., Korlevic, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., Reher, D., Hopfe, C., Nagel, S., Maricic, T., Fu, Q., Theunert, C., Rogers, R., Skoglund, P., Chintalapati, M., Dannemann, M., Nelson, B. J., Key, F. M., Rudan, P., Kucan, Ž., Gušic, I., Golovanova, L. V., Doronichev, V. B., Patterson, N., Reich, D., Eichler, E. E., Slatkin, M., Schierup, M. H., Andrés, A. M., Kelso, J., Meyer, M., & Pääbo, S. (2017). A high-coverage Neandertal genome from Vindija Cave in Croatia. Science,358(6363), 655-658. DOI BibTeX Endnote | |
| Skoglund, P., Thompson, J. C., Prendergast, M. E., Mittnik, A., Sirak, K., Hajdinjak, M., Salie, T., Rohland, N., Mallick, S., Peltzer, A., Heinze, A., Olalde, I., Ferry, M., Harney, E., Michel, M., Stewardson, K., Cerezo-Román, J. I., Chiumia, C., Crowther, A., Gomani-Chindebvu, E., Gidna, A. O., Grillo, K. M., Helenius, I. T., Hellenthal, G., Helm, R., Horton, M., López, S., Mabulla, A. Z. P., Parkington, J., Shipton, C., Thomas, M. G., Tibesasa, R., Welling, M., Hayes, V. M., Kennett, D. J., Ramesar, R., Meyer, M., Pääbo, S., Patterson, N., Morris, A. G., Boivin, N., Pinhasi, R., Krause, J., & Reich, D. (2017). Reconstructing Prehistoric African Population Structure. Cell,171(1), 59-71.e21. DOI BibTeX Endnote | |
| Slon, V., Hopfe, C., Weiß, C. L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M. V., Miller, R., Stewart, J. R., Derevianko, A. P., Jacobs, Z., Li, B., Roberts, R. G., Shunkov, M. V., de Lumley, H., Perrenoud, C., Gušic, I., Kucan, Ž., Rudan, P., Ayinuer-Petri, A., Essel, E., Nagel, S., Nickel, B., Schmidt, A., Prüfer, K., Kelso, J., Burbano, H. A., Pääbo, S., & Meyer, M. (2017). Neandertal and Denisovan DNA from Pleistocene sediments. Science,356(6338), 605-608. DOI BibTeX Endnote | |
| Slon, V., Viola, B., Renaud, G., Gansauge, M.-T., Benazzi, S., Sawyer, S., Hublin, J.-J., Shunkov, M. V., Derevianko, A. P., Kelso, J., Prüfer, K., Meyer, M., & Pääbo, S. (2017). A fourth Denisovan individual. Science Advances,3(7): e1700186. Open Access DOI BibTeX Endnote | |
| Yang, M. A., Gao, X., Theunert, C., Tong, H., Ayinuer-Petri, A., Nickel, B., Slatkin, M., Meyer, M., Pääbo, S., Kelso, J., & Fu, Q. (2017). 40,000-year-old individual from Asia provides insight into early population structure in Eurasia. Current Biology,27(20), 3202-3208. DOI BibTeX Endnote |
2016
| Brown, S., Higham, T., Slon, V., Pääbo, S., Meyer, M., Douka, K., Brock, F., Comeskey, D., Procopio, N., Shunkov, M., Derevianko, A., & Buckley, M. (2016). Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis. Scientific Reports,6: 23559. Open Access DOI BibTeX Endnote | |
| Fu, Q., Posth, C., Hajdinjak, M., Petr, M., Mallick, S., Fernandes, D., Furtwängler, A., Haak, W., Meyer, M., Mittnik, A., Nickel, B., Peltzer, A., Rohland, N., Slon, V., Talamo, S., Lazaridis, I., Lipson, M., Mathieson, I., Schiffels, S., Skoglund, P., Derevianko, A. P., Drozdov, N., Slavinsky, V., Tsybankov, A., Cremonesi, R. G., Mallegni, F., Gély, B., Vacca, E., Morales, M. R. G., Straus, L. G., Neugebauer-Maresch, C., Teschler-Nicola, M., Constantin, S., Moldovan, O. T., Benazzi, S., Peresani, M., Coppola, D., Lari, M., Ricci, S., Ronchitelli, A., Valentin, F., Thevenet, C., Wehrberger, K., Grigorescu, D., Rougier, H., Crevecoeur, I., Flas, D., Semal, P., Mannino, M. A., Cupillard, C., Bocherens, H., Conard, N. J., Harvati, K., Moiseyev, V., Drucker, D. G., Svoboda, J., Richards, M. P., Caramelli, D., Pinhasi, R., Kelso, J., Patterson, N., Krause, J., Pääbo, S., & Reich, D. (2016). The genetic history of Ice Age Europe. Nature,534(7606), 200-205. DOI BibTeX Endnote | |
| Kuhlwilm, M., Gronau, I., Hubisz, M. J., de Filippo, C., Prado-Martinez, J., Kircher, M., Fu, Q., Burbano, H. A., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Marques-Bonet, T., Andrés, A. M., Viola, B., Pääbo, S., Meyer, M., Siepel, A., & Castellano, S. (2016). Ancient gene flow from early modern humans into Eastern Neanderthals. Nature,530(7591), 429-433. DOI BibTeX Endnote | |
| Meyer, M., Arsuaga, J.-L., de Filippo, C., Nagel, S., Aximu-Petri, A., Nickel, B., Martínez, I., Gracia, A., Bermúdez de Castro, J. M., Carbonell, E., Viola, B., Kelso, J., Prüfer, K., & Pääbo, S. (2016). Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins. Nature,531(7595), 504-507. DOI BibTeX Endnote | |
| Slon, V., Glocke, I., Barkai, R., Gopher, A., Hershkovitz, I., & Meyer, M. (2016). Mammalian mitochondrial capture, a tool for rapid screening of DNA preservation in faunal and undiagnostic remains, and its application to Middle Pleistocene specimens from Qesem Cave (Israel). Quaternary International,398, 210-218. DOI BibTeX Endnote | |
| Talamo, S., Hajdinjak, M., Mannino, M. A., Fasani, L., Welker, F., Martini, F., Romagnoli, F., Zorzin, R., Meyer, M., & Hublin, J.-J. (2016). Direct radiocarbon dating and genetic analyses on the purported Neanderthal mandible from the Monti Lessini (Italy). Scientific Reports,6: 29144. Open Access DOI BibTeX Endnote | |
| Welker, F., Hajdinjak, M., Talamo, S., Jaouen, K., Dannemann, M., David, F., Julien, M., Meyer, M., Kelso, J., Barnes, I., Braces, S., Kamminga, P., Fischer, R., Kessler, B., Stewart, J. R., Pääbo, S., Collins, M. J., & Hublin, J.-J. (2016). Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne. Proceedings of the National Academy of Sciences of the United States of America,113(44), 11162-11167. DOI BibTeX Endnote |
2015
| Alter, S. E., Meyer, M., Post, K., Czechowski, P., Gravlund, P., Gaines, C., Rosenbaum, H. C., Kaschner, K., Turvey, S. T., van der Plicht, J., Shapiro, B., & Hofreiter, M. (2015). Climate impacts on transocean dispersal and habitat in gray whales from the Pleistocene to 2100. Molecular Ecology,24(7), 1510-1522. DOI BibTeX Endnote | |
| Benazzi, S., Slon, V., Talamo, S., Negrino, F., Peresani, M., Bailey, S. E., Sawyer, S., Panetta, D., Vicino, G., Starnini, E., Mannino, M. A., Salvadori, P. A., Meyer, M., Pääbo, S., & Hublin, J.-J. (2015). The makers of the Protoaurignacian and implications for Neandertal extinction. Science,348(6236), 793-796. DOI BibTeX Endnote | |
| Fu, Q., Hajdinjak, M., Moldovan, O., Constantin, S., Mallick, S., Skoglund, P., Patterson, N., Rohland, N., Lazaridis, I., Nickel, B., Viola, B., Prüfer, K., Meyer, M., Kelso, J., Reich, D., & Pääbo, S. (2015). An early modern human from Romania with a recent Neanderthal ancestor. Nature,524(7564), 216-219. DOI BibTeX Endnote | |
| Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., Fu, Q., Mittnik, A., Bánffy, E., Economou, C., Francken, M., Friederich, S., Pena, R. G., Hallgren, F., Khartanovich, V., Khokhlov, A., Kunst, M., Kuznetsov, P., Meller, H., Mochalov, O., Moiseyev, V., Nicklisch, N., Pichler, S. L., Risch, R., Guerra, M. A. R., Roth, C., Szécsényi-Nagy, A., Wahl, J., Meyer, M., Krause, J., Brown, D., Anthony, D., Cooper, A., Alt, K. W., & Reich, D. (2015). Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, (522), 207-211. DOI BibTeX Endnote | |
| Korlevic, P., Gerber, T., Gansauge, M.-T., Hajdinjak, M., Nagel, S., Ayinuer-Petri, A., & Meyer, M. (2015). Reducing microbial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques,59(2), 87-93. Open Access DOI BibTeX Endnote | |
| Prüfer, K., & Meyer, M. (2015). Comment on “Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans”. Science,347(6224), 835-835. DOI BibTeX Endnote | |
| Sawyer, S., Renaud, G., Viola, B., Hublin, J.-J., Gansauge, M.-T., Shunkov, M. V., Derevianko, A. P., Prüfer, K., Kelso, J., & Pääbo, S. (2015). Nuclear and mitochondrial DNA sequences from two Denisovan individuals. Proceedings of the National Academy of Sciences of the United States of America,112(51), 15696-15700. Open Access DOI BibTeX Endnote | |
| Teixeira, J. C., de Filippo, C., Weihmann, A., Meneu, J. R., Racimo, F., Dannemann, M., Nickel, B., Fischer, A., Halbwax, M., Andre, C., Atencia, R., Meyer, M., Parra, G., Pääbo, S., & Andrés, A. M. (2015). Long-term balancing selection in LAD1 maintains a missense trans-species polymorphism in humans, chimpanzees and bonobos. Molecular Biology and Evolution,32(5), 1186-1196. DOI BibTeX Endnote |
2014
| Castellano, S., Parra, G., Sánchez-Quinto, F. A., Racimo, F., Kuhlwilm, M., Kircher, M., Sawyer, S., Fu, Q., Heinze, A., Nickel, B., Dabney, J., Siebauer, M. F., White, L., Burbano, H. A., Renaud, G., Stenzel, U., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Shunkov, M. V., Derevianko, A. P., Viola, B., Meyer, M., Kelso, J., Andrés, A. M., & Pääbo, S. (2014). Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America,111(18), 6666-6671. DOI PubMed BibTeX Endnote | |
| Dabney, J., Meyer, M., & Pääbo, S. (2014). Ancient DNA damage. In E. C. Friedberg, S. J. Elledge, A. R. Lehmann, T. Lindahl, & M. Muzi-Falconi ( BibTeX Endnote | |
| Fu, Q., Li, H., Moorjani, P., Jay, F., Slepchenko, S. M., Bondarev, A. A., Johnson, P. L. F., Ayinuer-Petri, A., Prüfer, K., de Filippo, C., Meyer, M., Zwyns, N., Salazar García, D. C., Kuzmin, Y. V., Keates, S. G., Kosintsev, P. A., Razhev, D. I., Richards, M. P., Peristov, N. V., Lachmann, M., Douka, K., Higham, T. F. G., Slatkin, M., Hublin, J.-J., Reich, D., Kelso, J., Viola, B., & Pääbo, S. (2014). Genome sequence of a 45,000-year-old modern human from western Siberia. Nature,514(7523), 445-449. DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2014). Selective enrichment of damaged DNA molecules for ancient genome sequencing. Genome Research,24(9), 1543-1549. Open Access DOI BibTeX Endnote | |
| Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., Berger, B., Economou, C., Bollongino, R., Fu, Q., Bos, K. I., Nordenfelt, S., Li, H., de Filippo, C., Prüfer, K., Sawyer, S., Posth, C., Haak, W., Hallgren, F., Fornander, E., Rohland, N., Delsate, D., Francken, M., Guinet, J.-M., Wahl, J., Ayodo, G., Babiker, H. A., Bailliet, G., Balanovska, E., Balanovsky, O., Barrantes, R., Bedoya, G., Ben-Ami, H., Bene, J., Berrada, F., Bravi, C. M., Brisighelli, F., Busby, G. B. J., Cali, F., Churnosov, M., Cole, D. E. C., Corach, D., Damba, L., van Driem, G., Dryomov, S., Dugoujon, J.-M., Fedorova, S. A., Romero, I. G., Gubina, M., Hammer, M., Henn, B. M., Hervig, T., Hodoglugil, U., Jha, A. R., Karachanak-Yankova, S., Khusainova, R., Khusnutdinova, E., Kittles, R., Kivisild, T., Klitz, W., Kucinskas, V., Kushniarevich, A., Laredj, L., Litvinov, S., Loukidis, T., Mahley, R. W., Melegh, B., Metspalu, E., Molina, J., Mountain, J., Näkkäläjärvi, K., Nesheva, D., Nyambo, T., Osipova, L., Parik, J., Platonov, F., Posukh, O., Romano, V., Rothhammer, F., Rudan, I., Ruizbakiev, R., Sahakyan, H., Sajantila, A., Salas, A., Starikovskaya, E. B., Tarekegn, A., Toncheva, D., Turdikulova, S., Uktveryte, I., Utevska, O., Vasquez, R., Villena, M., Voevoda, M., Winkler, C. A., Yepiskoposyan, L., Zalloua, P., Zemunik, T., Cooper, A., Capelli, C., Thomas, M. G., Ruiz-Linares, A., Tishkoff, S. A., Singh, L., Thangaraj, K., Villems, R., Comas, D., Sukernik, R., Metspalu, M., Meyer, M., Eichler, E. E., Burger, J., Slatkin, M., Pääbo, S., Kelso, J., Reich, D., & Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature,513(7518), 409-413. DOI BibTeX Endnote | |
| Meyer, M., Fu, Q., Ayinuer-Petri, A., Glocke, I., Nickel, B., Arsuaga, J.-L., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., & Pääbo, S. (2014). A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature,505(7483), 403-406. DOI BibTeX Endnote | |
| Mitchell, K. J., Pratt, R. C., Watson, L. N., Gibb, G. C., Llamas, B., Kasper, M., Edson, J., Hopwood, B., Male, D., Armstrong, K. N., Meyer, M., Hofreiter, M., Austin, J., Donnellan, S. C., Lee, M. S. Y., Phillips, M. J., & Cooper, A. (2014). Molecular phylogeny, biogeography, and habitat preference evolution of marsupials. Molecular Biology and Evolution,31(9), 2322-2330. DOI BibTeX Endnote | |
| Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., Li, H., Mallick, S., Dannemann, M., Fu, Q., Kircher, M., Kuhlwilm, M., Lachmann, M., Meyer, M., Ongyerth, M., Siebauer, M. F., Theunert, C., Tandon, A., Moorjani, P., Pickrell, J., Mullikin, J. C., Vohr, S. H., Green, R. E., Hellmann, I., Johnson, P. L. F., Blanche, H., Cann, H., Kitzman, J. O., Shendure, J., Eichler, E. E., Lein, E. S., Bakken, T. E., Golovanova, L. V., Doronichev, V. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2014). The complete genome sequence of a Neanderthal from the Altai Mountains. Nature,505(7481), 43-49. DOI BibTeX Endnote | |
| Weigert, A., Helm, C., Meyer, M., Nickel, B., Arendt, D., Hausdorf, B., Santos, S. R., Halanych, K. M., Purschke, G., Bleidorn, C., & Struck, T. H. (2014). Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution,31(6), 1391-1401. DOI BibTeX Endnote |
2013
| Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., & Meyer, M. (2013). Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proceedings of the National Academy of Sciences of the United States of America,110(39), 15758-15763. DOI BibTeX Endnote | |
| Dabney, J., Meyer, M., & Pääbo, S. (2013). Ancient DNA damage. Cold Spring Harbor Perspectives in Biology,5(7): a012567. DOI BibTeX Endnote | |
| Finstermeier, K., Zinner, D., Brameier, M., Meyer, M., Kreuz, E., Hofreiter, M., & Roos, C. (2013). A mitogenomic phylogeny of living primates. PLoS One,8(7): e69504. Open Access DOI BibTeX Endnote | |
| Fu, Q., Meyer, M., Gao, X., Stenzel, U., Burbano, H. A., Kelso, J., & Pääbo, S. (2013). DNA analysis of an early modern human from Tianyuan Cave, China. Proceedings of the National Academy of Sciences of the United States of America,110(6), 2223-2227. DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2013). Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nature Protocols,8(4), 737-748. DOI BibTeX Endnote | |
| Maricic, T., Günther, V., Georgiev, O., Gehre, S., Curlin, M., Schreiweis, C., Naumann, R., Burbano, H. A., Meyer, M., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Gajovic, S., Kelso, J., Enard, W., Schaffner, W., & Pääbo, S. (2013). A recent evolutionary change affects a regulatory element in the human FOXP2 gene. Molecular Biology and Evolution,30(4), 844-852. DOI BibTeX Endnote | |
| Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D. L., Germonpré, M. B., Sablin, M. V., López-Giráldez, F., Domingo-Roura, X., Napierala, H., Uerpmann, H.-P., Loponte, D. M., Acosta, A. A., Giemsch, L., Schmitz, R. W., Worthington, B., Buikstra, J. E., Druzhkova, A., Graphodatsky, A. S., Ovodov, N. D., Wahlberg, N., Freedman, A. H., Schweizer, R. M., Koepfli, K.-P., Leonard, J. A., Meyer, M., Krause, J., Pääbo, S., Green, R. E., & Wayne, R. K. (2013). Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science,342(6160), 871-874. DOI BibTeX Endnote |
2012
| Dabney, J., & Meyer, M. (2012). Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. BioTechniques,52(2), 87-94. DOI BibTeX Endnote | |
| Gravlund, P., Aaris-Sørensen, K., Hofreiter, M., Meyer, M., Bollback, J. P., & Noe-Nygaar, N. (2012). Ancient DNA extracted from Danish aurochs (Bos primigenius): Genetic diversity and preservation. Annals of Anatomy - Anatomischer Anzeiger,194(1), 103-111. DOI BibTeX Endnote | |
| Hartmann, S., Helm, C., Nickel, B., Meyer, M., Struck, T. H., Tiedemann, R., Selbig, J., & Bleidorn, C. (2012). Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data. PLoS One,7(1): e29843. Open Access DOI BibTeX Endnote | |
| Hering, L., Henze, M. J., Kohler, M., Kelber, A., Bleidorn, C., Leschke, M., Nickel, B., Meyer, M., Kircher, M., Sunnucks, P., & Mayer, G. (2012). Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods. Molecular Biology and Evolution,29(11), 3451-3458. DOI BibTeX Endnote | |
| Kircher, M., Sawyer, S., & Meyer, M. (2012). Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Research,40(1): e3. Open Access DOI BibTeX Endnote | |
| Knapp, M., Stiller, M., & Meyer, M. (2012). Generating barcoded libraries for multiplex high-throughput sequencing. In B. Shapiro, & M. Hofreiter ( DOI BibTeX Endnote | |
| Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., Filippo, C. d., Sudmant, P. H., Alkan, C., Fu, Q., Do, R., Rohland, N., Tandon, A., Siebauer, M., Green, R. E., Bryc, K., Briggs, A. W., Stenzel, U., Dabney, J., Shendure, J., Kitzman, J., Hammer, M. F., Shunkov, M. V., Derevianko, A. P., Patterson, N., Andrés, A. M., Eichler, E. E., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2012). A high-coverage genome sequence from an archaic Denisovan individual. Science,338(6104), 222-226. DOI PubMed BibTeX Endnote |
2011
| Bos, K. I., Schuenemann, V. J., Golding, G. B., Burbano, H. A., Waglechner, N., Coombes, B. K., McPhee, J. B., DeWitte, S. N., Meyer, M., Schmedes, S., Wood, J., Earn, D. J. D., Herring, D. A., Bauer, P., Poinar, H. N., & Krause, J. (2011). A draft genome of Yersinia pestis from victims of the Black Death. Nature,478(7370), 506-510. Open Access DOI BibTeX Endnote | |
| Lerner, H. R. L., Meyer, M., James, H. F., Hofreiter, M., & Fleischer, R. C. (2011). Multilocus resolution of phylogeny and timescale in the extant adaptive radiation of Hawaiian honeycreepers. Current Biology,21(21), 1838-1844. DOI BibTeX Endnote | |
| Stewart, J. R., Aspinall, S., Beech, M., Fenberg, P., Hellyer, P., Larkin, N., Lokier, S. W., Marx, F. G., Meyer, M., Miller, R., Rainbow, P. S., Taylor, J. D., Whittaker, J. E., Al-Mehsin, K., & Strohmenger, C. J. (2011). Biotically constrained palaeoenvironmental conditions of a mid-Holocene intertidal lagoon on the southern shore of the Arabian Gulf: Evidence associated with a whale skeleton at Musaffah, Abu Dhabi, UAE. Quaternary Science Reviews,30(25-26), 3675-3690. DOI BibTeX Endnote |
2010
| Asher, R. J., Maree, S., Bronner, G., Bennett, N. C., Bloomer, P., Czechowski, P., Meyer, M., & Hofreiter, M. (2010). A phylogenetic estimate for golden moles (Mammalia, Afrotheria, Chrysochloridae). BMC Evolutionary Biology,10: 69. Open Access DOI BibTeX Endnote | |
| Briggs, A. W., Stenzel, U., Meyer, M., Krause, J., Kircher, M., & Pääbo, S. (2010). Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Special Issue on Synthetic Biology, e87, pp. 1-12. Open Access DOI BibTeX Endnote | |
| Burbano, H. A., Hodges, E., Green, R. E., Briggs, A. W., Krause, J., Meyer, M., Good, J. M., Maricic, T., Johnson, P. L. F., Xuan, Z., Rooks, M., Bhattacharjee, A., Brizuela, L., Albert, F. W., Rasilla, M. d. l., Fortea, J., Rosas, A., Lachmann, M., Hannon, G. J., & Pääbo, S. (2010). Targeted investigation of the Neandertal genome by array-based sequence capture. Science,328(5979), 723-725. DOI BibTeX Endnote | |
| Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M.-H.-Y., Hansen, N. F., Durand, E. Y., Malaspinas, A.-S., Jensen, J. D., Marques-Bonet, T., Alkan, C., Prüfer, K., Meyer, M., Burbano, H. A., Good, J. M., Schultz, R., Aximu-Petri, A., Butthoff, A., Höber, B., Höffner, B., Siegemund, M., Weihmann, A., Nusbaum, C., Lander, E. S., Russ, C., Novod, N., Affourtit, J., Egholm, M., Verna, C., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Doronichev, V. B., Golovanova, L. V., Lalueza-Fox, C., Rasilla, M. d. l., Fortea, J., Rosas, A., Schmitz, R. W., Johnson, P. L. F., Eichler, E. E., Falush, D., Birney, E., Mullikin, J. C., Slatkin, M., Nielsen, R., Kelso, J., Lachmann, M., Reich, D., & Pääbo, S. (2010). A draft sequence of the Neandertal genome. Science,328(5979), 710-722. DOI BibTeX Endnote | |
| Heyn, P., Stenzel, U., Briggs, A. W., Kircher, M., Hofreiter, M., & Meyer, M. (2010). Road blocks on paleogenomes - polymerase extension profiling reveals the frequency of blocking lesions in ancient DNA. Nucleic Acids Research,38(16): e161. Open Access DOI BibTeX Endnote | |
| Meyer, M., & Kircher, M. (2010). Illumina sequencing library preparation for highly multiplexed target capture and sequencing. Cold Spring Harbor Protocols,2010(6): prot5448. DOI BibTeX Endnote | |
| Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature,468(7327), 1053-1060. Open Access DOI BibTeX Endnote | |
| Rohland, N., Reich, D., Mallick, S., Meyer, M., Green, R. E., Georgiadis, N. J., Roca, A. L., & Hofreiter, M. (2010). Genomic DNA sequences from mastodon and woolly mammoth reveal deep speciation of forest and savanna elephants. PLoS Biology,8(12): e1000564. Open Access DOI BibTeX Endnote |
2009
| Meyer, M. (2009). Development of targeted high-throughput DNA sequencing methods and their application in evolutionary research. PhD Thesis, Universität Leipzig, Leipzig. BibTeX Endnote | |
| Stiller, M., Knapp, M., Stenzel, U., Hofreiter, M., & Meyer, M. (2009). Direct multiplex sequencing (DMPS): A novel method for targeted high-throughput sequencing of ancient and highly degraded DNA. Genome Research,19(10), 1843-1848. DOI BibTeX Endnote |
2008
| Green, R. E., Malaspinas, A.-S., Krause, J., Briggs, A. W., Johnson, P. L. F., Uhler, C., Meyer, M., Good, J. M., Maricic, T., Stenzel, U., Prüfer, K., Siebauer, M., Burbano, H. A., Ronan, M. T., Rothberg, J. M., Egholm, M., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Wikström, M., Laakkonen, L., Kelso, J., Slatkin, M., & Pääbo, S. (2008). A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell,134(3), 416-426. DOI BibTeX Endnote | |
| Meyer, M., Briggs, A. W., Maricic, T., Höber, B., Höffner, B., Krause, J., Weihmann, A., Pääbo, S., & Hofreiter, M. (2008). From micrograms to picograms: Quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Research,36(1): e5. Open Access DOI BibTeX Endnote | |
| Meyer, M., Stenzel, U., & Hofreiter, M. (2008). Parallel tagged sequencing on the 454 platform. Nature Protocols,3, 267-278. DOI BibTeX Endnote |
2007
| Briggs, A. W., Stenzel, U., Johnson, P. L. F., Green, R. E., Kelso, J., Prüfer, K., Meyer, M., Krause, J., Ronan, M. T., Lachmann, M., & Pääbo, S. (2007). Patterns of damage in genomic DNA sequences from a Neandertal. Proceedings of the National Academy of Sciences of the United States of America,104(37), 14616-14621. DOI BibTeX Endnote | |
| Meyer, M., Stenzel, U., Myles, S., Prüfer, K., & Hofreiter, M. (2007). Targeted high-throughput sequencing of tagged nucleic acid samples. Nucleic Acids Research,35(15): e97. Open Access DOI BibTeX Endnote |
2006
| Römpler, H., Dear, P. H., Krause, J., Meyer, M., Rohland, N., Schöneberg, T., Spriggs, H., Stiller, M., & Hofreiter, M. (2006). Multiplex amplification of ancient DNA. Nature Protocols,1(2), 720-728. DOI BibTeX Endnote |
2005
| Ebersberger, I., & Meyer, M. (2005). A genomic region evolving toward different GC contents in humans and chimpanzees indicates a recent and regionally limited shift in the mutation pattern. Molecular Biology and Evolution,22(5), 1240-1245. DOI BibTeX Endnote |
