Max-Planck-Institut
Contact
Department of Evolutionary Genetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig
phone: +49 341 3550 - 500
e-mail: mittag@[>>> Please remove the brackets! <<<]eva.mpg.de
Recent Department Publications
Last update: July 11th, 2020
In press
| Peter, B. M., Petkova, D., & Novembre, J. (in press). Genetic landscapes reveal how human genetic diversity aligns with geography. Nature Genetics. |
2020
| Cauret, C. M. S., Gansauge, M.-T., Tupper, A. S., Furman, B. L. S., Knytl, M., Song, X., Greenbaum, E., Meyer, M., & Evans, B. J. (2020). Developmental systems drift and the drivers of sex chromosome evolution. Molecular Biology and Evolution,37(3), 799-808. DOI BibTeX Endnote | |
Dannemann, M., He, Z., Heide, C., Vernot, B., Sidow, L., Kanton, S., Weigert, A., Treutlein, B., Pääbo, S., Kelso, J., & Camp, J. G. (2020). Human stem cell resources are an inroad to Neandertal DNA functions. Stem Cell Reports,15, 1-12.  Open Access DOI BibTeX Endnote | |
| Gansauge, M.-T., Aximu-Petri, A., Nagel, S., & Meyer, M. (2020). Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA (advance online). Nature Protocols. DOI BibTeX Endnote | |
| Hublin, J.-J., Sirakov, N., Aldeias, V., Bailey, S., Bard, E., Delvigne, V., Endarova, E., Fagault, Y., Fewlass, H., Hajdinjak, M., Kromer, B., Krumov, I., Marreiros, J., Martisius, N. L., Paskulin, L., Sinet-Mathiot, V., Meyer, M., Pääbo, S., Popov, V., Rezek, Z., Sirakova, S., Skinner, M. M., Smith, G. M., Spasov, R., Talamo, S., Tuna, T., Wacker, L., Welker, F., Wilcke, A., Zahariev, N., McPherron, S. P., & Tsanova, T. (2020). Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria. Nature,581, 299-302. DOI BibTeX Endnote | |
| Key, F. M., Posth, C., Esquivel-Gomez, L. R., Hübler, R., Spyrou, M. A., Neumann, G. U., Furtwängler, A., Sabin, S., Burri, M., Wissgot, A., Lankapalli, A. K., Vågene, Å. J., Meyer, M., Nagel, S., Tukhbatova, R., Khokhlov, A., Chizhevsky, A., Hansen, S., Belinsky, A. B., Kalmykov, A., Kantorovich, A. R., Maslov, V. E., Stockhammer, P. W., Vai, S., Zavattaro, M., Riga, A., Caramelli, D., Skeates, R., Beckett, J., Gradoli, M. G., Steuri, N., Hafner, A., Ramstein, M., Siebke, I., Lösch, S., Erdal, Y. S., Alikhan, N.-F., Zhou, Z., Achtman, M., Bos, K., Reinhold, S., Haak, W., Kühnert, D., Herbig, A., & Krause, J. (2020). Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution. DOI BibTeX Endnote | |
| Khrameeva, E., Kurochkin, I., Han, D., Guijarro, P., Kanton, S., Santel, M., Qian, Z., Rong, S., Mazin, P., Sabirov, M., Bulat, M., Efimova, O., Tkachev, A., Guo, S., Sherwood, C. C., Camp, J. G., Pääbo, S., Treutlein, B., & Khaitovich, P. (2020). Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains. Genome Research,30(5), 776-789. Open Access DOI BibTeX Endnote | |
| Lang, P. L. M., Weiß, C. L., Kersten, S., Latorre, S. M., Nagel, S., Nickel, B., Meyer, M., & Burbano, H. A. (2020). Hybridization ddRAD-sequencing for population genomics of nonmodel plants using highly degraded historical specimen DNA (advance online). Molecular Ecology Resources. Open Access DOI BibTeX Endnote | |
| Liu, D., Duong, N. T., Ton, N. D., Van Phong, N., Pakendorf, B., Van Hai, N., & Stoneking, M. (2020). Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity (advance online). Molecular Biology and Evolution, msaa099. Open Access DOI BibTeX Endnote | |
| Mafessoni, F., Grote, S., de Filippo, C., Slon, V., Kolobova, K. A., Viola, B., Markin, S. V., Chintalapati, M., Peyrégne, S., Skov, L., Skoglund, P., Krivoshapkin, A. I., Derevianko, A. P., Meyer, M., Kelso, J., Peter, B., Prüfer, K., & Pääbo, S. (2020). A high-coverage Neandertal genome from Chagyrskaya Cave (advance online). Proceedings of the National Academy of Sciences. Open Access DOI BibTeX Endnote | |
| Miller, A. J., Yu, Q., Czerwinski, M., Tsai, Y.-H., Conway, R. F., Wu, A., Holloway, E. M., Walker, T., Glass, I. A., Treutlein, B., Camp, J. G., & Spence, J. R. (2020). In Vitro and In Vivo Development of the Human Airway at Single-Cell Resolution. Developmental Cell,53(1): e6, pp. 117-128. DOI BibTeX Endnote | |
| Mitina, A., Mazin, P., Vanyushkina, A., Anikanov, N., Mair, W., Guo, S., & Khaitovich, P. (2020). Lipidome analysis of milk composition in humans, monkeys, bovids, and pigs. BMC Evolutionary Biology,20(70). Open Access DOI BibTeX Endnote | |
| Ou, M.-Y., Ju, X.-C., Cai, Y.-J., Sun, X.-Y., Wang, J.-F., Fu, X.-Q., Sun, Q., & Luo, Z.-G. (2020). Heterogeneous nuclear ribonucleoprotein A3 controls mitotic progression of neural progenitors via interaction with cohesin. Development,147(10): dev185132. DOI BibTeX Endnote | |
| Pedro, N., Brucato, N., Fernandes, V., André, M., Saag, L., Pomat, W., Besse, C., Boland, A., Deleuze, J.-F., Clarkson, C., Sudoyo, H., Metspalu, M., Stoneking, M., Cox, M. P., Leavesley, M., Pereira, L., & Ricaut, F.-X. (2020). Papuan mitochondrial genomes and the settlement of Sahul. Journal of Human Genetics. Open Access DOI BibTeX Endnote | |
| Peyrégne, S. (2020). Tracing the ancestral roots of Neandertals. The Science Breaker,6(1). Open Access DOI BibTeX Endnote | |
| Semo, A., Gayà-Vidal, M., Fortes-Lima, C., Alard, B., Oliveira, S., Almeida, J., Prista, A., Damasceno, A., Fehn, A., Schlebusch, C., & Rocha, J. (2020). Along the Indian Ocean coast: genomic variation in Mozambique provides new insights into the Bantu expansion. Molecular Biology and Evolution,37(2), 406-416. Open Access DOI BibTeX Endnote | |
| Skov, L., Macià, M. C., Sveinbjörnsson, G., Mafessoni, F., Lucotte, E. A., Einarsdóttir, M. S., Jonsson, H., Halldorsson, B., Gudbjartsson, D. F., Helgason, A., Schierup, M. H., & Stefansso, K. (2020). The nature of Neanderthal introgression revealed by 27,566 Icelandic genomes. Nature,582, 78-83. DOI BibTeX Endnote | |
| Srithawong, S., Muisuk, K., Srikummool, M., Kampuansai, J., Pittayaporn, P., Ruangchai, S., Liu, D., & Kutanan, W. (2020). Close genetic relationship between central Thai and Mon people in Thailand revealed by autosomal microsatellites. International Journal of Legal Medicine. DOI BibTeX Endnote | |
| Taverna, E., & Huttner, W. B. (2020). The Golgi apparatus in polarized neuroepithelial stem cells and their progeny: Canonical and noncanonical features. In M. Kloc ( DOI BibTeX Endnote | |
| Voiculescu, S. E., Le Duc, D., Rosca, A. E., & Zagrean, A.-M. (2020). The pineal gland development and its physiology in fetus and neonate. In C. S. Kovacs, & C. L. Deal ( DOI BibTeX Endnote | |
| Zeberg, H., Kelso, J., & Pääbo, S. (2020). The Neandertal progesterone receptor (advance online). Molecular Biology and Evolution, msaa119. Open Access DOI BibTeX Endnote |
2019
| Barbieri, C., Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, msz174. Open Access DOI BibTeX Endnote | |
| Bokelmann, L., Hajdinjak, M., Peyrégne, S., Brace, S., Essel, E., de Filippo, C., Glocke, I., Grote, S., Mafessoni, F., Nagel, S., Kelso, J., Prüfer, K., Vernot, B., Barnes, I., Pääbo, S., Meyer, M., & Stringer, C. (2019). A genetic analysis of the Gibraltar Neanderthals. Proceedings of the National Academy of Sciences,116(31), 15610-15615. DOI BibTeX Endnote | |
| Bozek, K., Khrameeva, E. E., Reznick, J., Omerbašić, D., Bennett, N. C., Lewin, G. R., Azpurua, J., Gorbunova, V., Seluanov, A., Regnard, P., Wanert, F., Marchal, J., Pifferi, F., Aujard, F., Liu, Z., Shi, P., Pääbo, S., Schröder, F., Willmitzer, L., Giavalisco, P., & Khaitovich, P. (2019). Publisher Correction: Lipidome determinants of maximal lifespan in mammals. Scientific Reports,9(1): 6972. DOI BibTeX Endnote | |
| Brazovskaja, A., Treutlein, B., & Camp, J. G. (2019). High-throughput single-cell transcriptomics on organoids. Current Opinion in Biotechnology,55, 167-171. DOI BibTeX Endnote | |
| Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C. J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M. P., Sudoyo, H., Stoneking, M., Pereira, L., & Ricaut, F.-X. (2019). Evidence of Austronesian Genetic Lineages in East Africa and South Arabia: Complex Dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution,11(3), 748-758. Open Access DOI BibTeX Endnote | |
| Bücking, R., Cox, M. P., Hudjashov, G., Saag, L., Sudoyo, H., & Stoneking, M. (2019). Archaic mitochondrial DNA inserts in modern day nuclear genomes. BMC Genomics,20: 1017. Open Access DOI BibTeX Endnote | |
| Dabney, J., & Meyer, M. (2019). Extraction of highly degraded DNA from ancient bones and teeth. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
| Dannemann, M. (2019). Der Neandertaler in uns. BIOspektrum,25(5), 497-499. Open Access DOI BibTeX Endnote | |
| Devièse, T., Massilani, D., Yi, S., Comeskey, D., Nagel, S., Nickel, B., Ribechini, E., Lee, J., Tseveendorj, D., Gunchinsuren, B., Meyer, M., Pääbo, S., & Higham, T. (2019). Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia. Nature Communications,10(10): 274. Open Access DOI BibTeX Endnote | |
| Douka, K., Brown, S., Higham, T., Pääbo, S., Derevianko, A., & Shunkov, M. (2019). FINDER project: collagen fingerprinting (ZooMS) for the identification of new human fossils. Antiquity,93(367): e1. DOI BibTeX Endnote | |
| Douka, K., Slon, V., Jacobs, Z., Ramsey, C. B., Shunkov, M. V., Derevianko, A. P., Mafessoni, F., Kozlikin, M. B., Li, B., Grün, R., Comeskey, D., Devièse, T., Brown, S., Viola, B., Kinsley, L., Buckley, M., Meyer, M., Roberts, R. G., Pääbo, S., Kelso, J., & Higham, T. (2019). Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave. Nature,565(7741), 640-644. DOI BibTeX Endnote | |
| Drukewitz, S. H., Bokelmann, L., Undheim, E. A. B., & von Reumont, B. M. (2019). Toxins from scratch? Diverse, multimodal gene origins in the predatory robber fly Dasypogon diadema indicate a dynamic venom evolution in dipteran insects. GigaScience,8(7): giz081. Open Access DOI BibTeX Endnote | |
| Drukewitz, S. H., Jauss, R.-T., Bokelmann, L., & von Reumont, B. M. (2019). The complete mitochondrial genome of the hymenopteran hunting robber fly Dasypogon diadema. Mitochondrial DNA Part B,4(1), 1584-1585. Open Access DOI BibTeX Endnote | |
| Evans, B. J., Gansauge, M.-T., Stanley, E. L., Furman, B. L. S., Cauret, C. M. S., Ofori-Boateng, C., Gvoždík, V., Streicher, J. W., Greenbaum, E., Tinsley, R. C., Meyer, M., & Blackburn, D. C. (2019). Xenopus fraseri: Mr. Fraser, where did your frog come from? PLoS One,14(9): e0220892. Open Access DOI BibTeX Endnote | |
| Ezra, D., Hershkovitz, I., Salame, K., Alperovitch-Najenson, D., & Slon, V. (2019). Osteophytes in the Cervical Vertebral Bodies (C3–C7)—Demographical Perspectives. The Anatomical Record,302(2), 226-231. DOI BibTeX Endnote | |
| Ezra, D., Slon, V., Kedar, E., Masharawi, Y., Salame, K., Alperovitch‐Najenson, D., & Hershkovitz, I. (2019). The torg ratio of C3–C7 in African Americans and European Americans: A skeletal study. Clinical Anatomy,32(1), 84-89. DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2019). A method for single-stranded ancient DNA library preparation. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
| Gerber, T. (2019). Dissecting limb regeneration and cancer heterogeneity using single-cell RNA-seq. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Giner-Delgado, C., Villatoro, S., Lerga-Jaso, J., Gayà-Vidal, M., Oliva, M., Castellano, D., Pantano, L., Bitarello, B. D., Izquierdo, D., Noguera, I., Olalde, I., Delprat, A., Blancher, A., Lalueza-Fox, C., Esko, T., O’Reilly, P. F., Andrés, A. M., Ferretti, L., Puig, M., & Cáceres, M. (2019). Evolutionary and functional impact of common polymorphic inversions in the human genome. Nature Communications,10(4222). Open Access DOI BibTeX Endnote | |
| Glocke, I. (2019). Improving methods for the extraction of DNA from ancient bones, teeth and sediments. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Gunz, P., Tilot, A. K., Wittfeld, K., Teumer, A., Shapland, C. Y., van Erp, T. G. M., Dannemann, M., Vernot, B., Neubauer, S., Guadalupe, T., Fernández, G., Brunner, H. G., Enard, W., Fallon, J., Hosten, N., Völker, U., Profico, A., Di Vincenzo, F., Manzi, G., Kelso, J., St. Pourcain, B., Hublin, J.-J., Franke, B., Pääbo, S., Macciardi, F., Grabe, H. J., & Fisher, S. E. (2019). Neandertal introgression sheds light on modern human endocranial globularity. Current Biology,29(1), 120-127.e5. Open Access DOI BibTeX Endnote | |
| Han, S., Andrés, A. M., & Marques-Bonet, T. (2019). Genetic variation in Pan species is shaped by demographic history and harbors lineage-specific functions. Genome Biology and Evolution,11(4), 1178-1191. Open Access DOI BibTeX Endnote | |
| Hübner, A., Wachsmuth, M., Schröder, R., Li, M., Eis-Hübinger, A. M., Madea, B., & Stoneking, M. (2019). Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome. Scientific Reports,9: 11219. Open Access DOI BibTeX Endnote | |
| Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, J. S., & Cox, M. P. (2019). Multiple deeply divergent Denisovan ancestries in Papuans. Cell,117(4), 1010-1021. DOI BibTeX Endnote | |
| Kanton, S., Boyle, M. J., He, Z., Santel, M., Weigert, A., Sanchís-Calleja, F., Guijarro, P., Sidow, L., Fleck, J. S., Han, D., Qian, Z., Heide, M., Huttner, W. B., Khaitovich, P., Pääbo, S., Treutlein, B., & Camp, J. G. (2019). Organoid single-cell genomic atlas uncovers human-specific features of brain development. Nature,574(7778), 418-422. DOI BibTeX Endnote | |
| Klaus, J., Kanton, S., Kyrousi, C., Ayo-Martin, A. C., Giaimo, R. D., Riesenberg, S., O’Neill, A. C., Camp, J. G., Tocco, C., Santel, M., Rusha, E., Drukker, M., Schroeder, M., Götz, M., Robertson, S. P., Treutlein, B., & Cappello, S. (2019). Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. Nature Medicine,25, 561-568. DOI BibTeX Endnote | |
| Klein, A. M., & Treutlein, B. (2019). Single cell analyses of development in the modern era. Development,146(12): dev181396. DOI BibTeX Endnote | |
| Korlević, P., & Meyer, M. (2019). Pretreatment: Removing DNA contamination from ancient bones and teeth using sodium hypochlorite and phosphate. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares ( DOI BibTeX Endnote | |
| Kutanan, W., Kampuansai, J., Srikummool, M., Brunelli, A., Ghirotto, S., Arias, L., Macholdt, E., Hübner, A., Schröder, R., & Stoneking, M. (2019). Contrasting paternal and maternal genetic histories of Thai and Lao populations. Molecular Biology and Evolution,36(7): msz083, pp. 1490-1506. Open Access DOI BibTeX Endnote | |
| Laval, G., Peyrégne, S., Zidane, N., Harmant, C., Renaud, F., Patin, E., Prugnolle, F., & Quintana-Murci, L. (2019). Recent adaptive acquisition by African rainforest hunter-gatherers of the late Pleistocene sickle-cell mutation suggests past differences in malaria exposure. The American Journal of Human Genetics,104(3), 553-561. DOI BibTeX Endnote | |
| Macholdt, E., Arias, L., Duong, N. T., Ton, N. D., Van Phong, N., Schröder, R., Pakendorf, B., Van Hai, N., & Stoneking, M. (2019). The paternal and maternal genetic history of Vietnamese populations. European Journal of Human Genetics,28(5), 636-645. Open Access DOI BibTeX Endnote | |
| Mafessoni, F. (2019). Encounters with archaic hominins. Nature Ecology and Evolution,3, 14-15. DOI BibTeX Endnote | |
| Mafessoni, F., & Lachmann, M. (2019). The complexity of understanding others as the evolutionary origin of empathy and emotional contagion. Scientific Reports,9: 5794. Open Access DOI BibTeX Endnote | |
| Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., Alex, N., Broomandkhoshbacht, N., Candilio, F., Callan, K., Cheronet, O., Culleton, B. J., Ferry, M., Fernandes, D., Freilich, S., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, É., Harper, T. K., Keating, D., Lawson, A. M., Mah, M., Mandl, K., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zalzala, F., Zhang, Z., Akhatov, G., Bagashev, A. N., Bagnera, A., Baitanayev, B., Bendezu-Sarmiento, J., Bissembaev, A. A., Bonora, G. L., Chargynov, T. T., Chikisheva, T., Dashkovskiy, P. K., Derevianko, A., Dobeš, M., Douka, K., Dubova, N., Duisengali, M. N., Enshin, D., Epimakhov, A., Fribus, A. V., Fuller, D., Goryachev, A., Gromov, A., Grushin, S. P., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Krygin, A. P., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Mamedov, A. M., Mamirov, T. B., Meiklejohn, C., Merrett, D. C., Micheli, R., Mochalov, O., Mustafokulov, S., Nayak, A., Pettener, D., Potts, R., Razhev, D., Rykun, M., Sarno, S., Savenkova, T. M., Sikhymbaeva, K., Slepchenko, S. M., Soltobaev, O. A., Stepanova, N., Svyatko, S., Tabaldiev, K., Teschler-Nicola, M., Tishkin, A. A., Tkachev, V. V., Vasilyev, S., Velemínský, P., Voyakin, D., Yermolayeva, A., Zahir, M., Zubkov, V. S., Zubova, A., Shinde, V. S., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D. J., Frachetti, M., Pinhasi, R., & Reich, D. (2019). The formation of human populations in South and Central Asia. Science,365(6457): eaat7487. DOI BibTeX Endnote | |
| Nersisyan, L., Nikoghosyan, M., Arakelyan, A., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others (2019). WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene. Scientific Reports,9: 18758. Open Access DOI BibTeX Endnote | |
| Oliveira, S., Hübner, A., Fehn, A.-M., Aço, T., Lages, F., Pakendorf, B., Stoneking, M., & Rocha, J. (2019). The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola. European Journal of Human Genetics,27, 475-483. DOI BibTeX Endnote | |
| Pääbo, S. (2019). Lessons from our inner Neanderthal: How extinct hominins live on in people today; the genomes of now-extinct archaic humans can help us understand more about what makes us modern-day humans truly unique. In S. Shuzhen, & B. Seet ( BibTeX Endnote | |
| Parra, R. G., Papadopoulos, N., Ahumada-Arranz, L., El Kholtei, J., Mottelson, N., Horokhovsky, Y., Treutlein, B., & Soeding, J. (2019). Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research,47(17), 8961-8974. Open Access DOI BibTeX Endnote | |
| Petr, M., Pääbo, S., Kelso, J., & Vernot, B. (2019). Limits of long-term selection against Neandertal introgression. Proceedings of the National Academy of Sciences,116(5), 1639-1644. Open Access DOI BibTeX Endnote | |
| Petr, M., Vernot, B., & Kelso, J. (2019). admixr – R package for reproducible analyses using ADMIXTOOLS. Bioinformatics,35(17): btz030, pp. 3194-3195. Open Access DOI BibTeX Endnote | |
| Peyrégne, S. (2019). Investigating deep human evolutionary and population history using archaic human genomes. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., Conard, N. J., Kind, C. J., Posth, C., Krause, J., Abrams, G., Bonjean, D., Di Modica, K., Toussaint, M., Kelso, J., Meyer, M., Pääbo, S., & Prüfer, K. (2019). Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science Advances,5(6): eaaw5873. Open Access DOI BibTeX Endnote | |
| Reher, D., Key, F. M., Andrés, A. M., & Kelso, J. (2019). Immune gene diversity in archaic and present-day humans. Genome Biology and Evolution,11(1), 232-241. Open Access DOI BibTeX Endnote | |
| Riesenberg, S., Chintalapati, M., Macak, D., Kanis, P., Maricic, T., & Pääbo, S. (2019). Simultaneous precise editing of multiple genes in human cells. Nucleic Acids Research,47(19): e116. Open Access DOI BibTeX Endnote | |
| Schmidt, J., de Manuel, M., Marques-Bonet, T., Castellano, S., & Andrés, A. M. (2019). The impact of genetic adaptation on chimpanzee subspecies differentiation. PLOS Genetics,15(11), 1-32. Open Access DOI BibTeX Endnote | |
| Shinde, V., Narasimhan, V. M., Rohland, N., Mallick, S., Mah, M., Lipson, M., Nakatsuka, N., Adamski, N., Broomandkhoshbacht, N., Ferry, M., Lawson, A. M., Michel, M., Oppenheimer, J., Stewardson, K., Jadhav, N., Kim, Y. J., Chatterjee, M., Munshi, A., Panyam, A., Waghmare, P., Yadav, Y., Patel, H., Kaushik, A., Thangaraj, K., Meyer, M., Patterson, N., Rai, N., & Reich, D. (2019). An ancient Harappan genome lacks ancestry from Steppe pastoralists or Iranian farmers. Cell,179(3), 729-735.e10. DOI BibTeX Endnote | |
| Shull, G., Haffner, C., Huttner, W. B., Kodandaramaiah, S. B., & Taverna, E. (2019). Robotic platform for microinjection into single cells in brain tissue. EMBO reports,20(10): e47880. Open Access DOI BibTeX Endnote | |
| Shvetsova, E., Sofronova, A., Monajemi, R., Gagalova, K., Draisma, H. H. M., White, S. J., Santen, G. W. E., Chuva de Sousa Lopes, S. M., Heijmans, B. T., van Meurs, J., Jansen, R., Franke, L., Kielbasa, S. M., den Dunnen, J. T., ´t Hoen, P. A. C., BIOS consortium, GoNL consortium, including authors, Li, M., Stoneking, M., & & others (2019). Skewed X-inactivation is common in the general female population. European Journal of Human Genetics,27, 455-465. Open Access DOI BibTeX Endnote | |
| Slon, V., & Pääbo, S. (2019). Rendezvous in der Steinzeit. In Highlights 2018 aus dem Jahrbuch der Max-Planck-Gesellschaft (pp. 32-34). München: Max-Planck-Gesellschaft zur Förderung der Wissenschaften e. V. BibTeX Endnote | |
| Spataru, A., Le Duc, D., Zagrean, L., & Zagrean, A.-M. (2019). Ethanol exposed maturing rat cerebellar granule cells show impaired energy metabolism and increased cell death after oxygen-glucose deprivation. Neural Regeneration Research,14(3), 485-490. DOI BibTeX Endnote | |
| Swift, J. A., Bunce, M., Dortch, J., Douglass, K., Faith, J. T., Fellow Jates, J. A., Field, J., Haberle, S. G., Jacob, E., Johnson, C. N., Lindsey, E., Lorenzen, E. D., Louys, J., Miller, G., Mychajliw, A. M., Slon, V., Villavicencio, N. A., Waters, M. R., Welker, F., Wood, R., Petraglia, M. D., Boivin, N., & Roberts, P. (2019). Micro methods for megafauna: novel approaches to late quaternary extinctions and their contributions to faunal conservation in the anthropocene. Bioscience,69(11): biz105, pp. 877-887. Open Access DOI BibTeX Endnote | |
| Tkachev, A., Stepanova, V., Zhang, L., Khrameeva, E., Zubkov, D., Giavalisco, P., & Khaitovich, P. (2019). Differences in lipidome and metabolome organization of prefrontal cortex among human populations. Scientific Reports,9: 18348. Open Access DOI BibTeX Endnote | |
| Tyshkovskiy, A., Bozaykut, P., Borodinova, A. A., Gerashchenko, M. V., Ables, G. P., Garratt, M., Khaitovich, P., Clish, C. B., Miller, R. A., & Gladyshev, V. N. (2019). Identification and application of gene expression signatures associated with lifespan extension. Cell Metabolism,30(3): e8, pp. 573-593. DOI BibTeX Endnote | |
| Vai, S., Sarno, S., Lari, M., Luiselli, D., Manzi, G., Gallinaro, M., Mataich, S., Hübner, A., Modi, A., Pilli, E., Tafuri, M. A., Caramelli, D., & di Lernia, S. (2019). Ancestral mitochondrial N lineage from the Neolithic ‘green’ Sahara. Scientific Reports,9(1): 3530. Open Access DOI BibTeX Endnote | |
| Wiedenhoeft, J., Cagan, A., Kozhemyakina, R., Gulevich, R., & Schliep, A. (2019). Bayesian localization of CNV candidates in WGS data within minutes. Algorithms for Molecular Biology,14: 20. Open Access DOI BibTeX Endnote | |
| Wren, J. D., Valencia, A., & Kelso, J. (2019). Reviewer-coerced citation: Case report, update on journal policy and suggestions for future prevention. Bioinformatics,35(18), 3217-3218. Open Access DOI BibTeX Endnote |
2018
| Arias Alvis, L. (2018). Human population history of Northwestern Amazonia, Colombia. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Arias, L., Barbieri, C., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia. American Journal of Physical Anthropology,165(2), 238-255. DOI BibTeX Endnote | |
| Arias, L., Schröder, R., Hübner, A., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). Cultural innovations influence patterns of genetic diversity in Northwestern Amazonia. Molecular Biology and Evolution,35(11), 2719-2735. Open Access DOI BibTeX Endnote | |
| Ayabe, H., Anada, T., Kamoya, T., Sato, T., Kimura, M., Yoshizawa, E., Kikuchi, S., Ueno, Y., Sekine, K., Camp, J. G., Treutlein, B., Ferguson, A., Suzuki, O., Takebe, T., & Taniguchi, H. (2018). Optimal hypoxia regulates human iPSC-derived liver bud differentiation through intercellular TGFB signaling. Stem Cell Reports,11(2), 306-316. Open Access DOI BibTeX Endnote | |
| Bajic, V., Baribieri, C., Hübner, A., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Roewer, L., Purps, J., Stoneking, M., & Pakendorf, B. (2018). Genetic structure and sex‐biased gene flow in the history of southern African populations. American Journal of Physical Anthropology,167(3): 23694, pp. 656-671. Open Access DOI BibTeX Endnote | |
| Barlow, A., Cahill, J. A., Hartmann, S., Theunert, C., Xenikoudakis, G., Fortes, G. G., Paijmans, J. L. A., Rabeder, G., Frischauf, C., Grandal-d’Anglade, A., García-Vázquez, A., Murtskhvaladze, M., Saarma, U., Anijalg, P., Skrbinšek, T., Bertorelle, G., Gasparian, B., Bar-Oz, G., Pinhasi, R., Slatkin, M., Dalén, L., Shapiro, B., & Hofreiter, M. (2018). Partial genomic survival of cave bears in living brown bears. Nature Ecology & Evolution,2, 1563-1570. DOI BibTeX Endnote | |
| Battlay, P., Leblanc, P. B., Green, L., Garud, N. R., Schmidt, J., Fournier-Level, A., & Robin, C. (2018). Structural variants and selective sweep Foci contribute to insecticide resistance in the Drosophila genetic reference panel. G3: Genes, Genomes, Genetics,8(11), 3489-3497. Open Access DOI BibTeX Endnote | |
| Bitarello, B. D., de Filippo, C., Teixeira, J. C., Schmidt, J. M., Kleinert, P., Meyer, D., & Andrés, A. M. (2018). Signatures of long-term balancing selection in human genomes. Genome Biology and Evolution,10(3), 939-955. Open Access DOI BibTeX Endnote | |
| Brucato, N., Fernandes, V., Mazières, S., Kusuma, P., Cox, M. P., Ng’ang’a, J. W., Omar, M., Simeone-Senelle, M.-C., Frassati, C., Alshamali, F., Fin, B., Boland, A., Deleuze, J.-F., Stoneking, M., Adelaar, A., Crowther, A., Boivin, N., Pereira, L., Bailly, P., Chiaroni, J., & Ricaut, F.-X. (2018). The Comoros show the earliest Austronesian gene flow into the Swahili corridor. The American Journal of Human Genetics,102(1), 58-68. DOI BibTeX Endnote | |
| Camp, J. G., Wollny, D., & Treutlein, B. (2018). Single-cell genomics to guide human stem cell and tissue engineering. Nature Methods,15(9), 661-667. DOI BibTeX Endnote | |
| Chintalapati, M. (2018). Indels and large scale variation in archaic hominins compared to present day humans. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Dannemann, M., & Racimo, F. (2018). Something old, something borrowed: Admixture and adaptation in human evolution. Current Opinion in Genetics & Development,53, 1-8. DOI BibTeX Endnote | |
| de Filippo, C., Meyer, M., & Prüfer, K. (2018). Quantifying and reducing spurious alignments for the analysis of ultra-short ancient DNA sequences. BMC Biology,16: 121. Open Access DOI BibTeX Endnote | |
| Duong, N. T., Macholdt, E., Ton, N. D., Arias, L., Schröder, R., Phong, N. V., Thuy, V. T. B., Ha, N. H., Hue, H. T. T., Xuan, N. T., Oanh, K. T. P., Hien, L. T. T., Hoang, N. H., Pakendorf, B., Stoneking, M., & Hai, N. V. (2018). Complete human mtDNA genome sequences from Vietnam and the phylogeography of Mainland Southeast Asia. Scientific Reports,8: 11651. Open Access DOI BibTeX Endnote | |
| Fast, L. (2018). Analysis of neuron structure in humans and apes. Master Thesis, Universität, Leipzig. BibTeX Endnote | |
| Fei, J.-F., Lou, W.-P.-K., Knapp, D., Murawala, P., Gerber, T., Taniguchi, Y., Nowoshilow, S., Khattak, S., & Tanaka, E. M. (2018). Application and optimization of CRISPR–Cas9-mediated genome engineering in axolotl ( Ambystoma mexicanum ). Nature Protocols,13, 2908-2943. DOI BibTeX Endnote | |
| Gayk, Z. G., Le Duc, D., Horn, J., & Lindsay, A. R. (2018). Genomic insights into natural selection in the common loon (Gavia immer): evidence for aquatic adaptation. BMC Evolutionary Biology,18: 64. Open Access DOI BibTeX Endnote | |
| Gerber, T., Murawala, P., Knapp, D., Masselink, W., Schuez, M., Hermann, S., Gac-Santel, M., Nowoshilow, S., Kageyama, J., Khattak, S., Currie, J. D., Camp, J. G., Tanaka, E. M., & Treutlein, B. (2018). Single-cell analysis uncovers convergence of cell identities during axolotl limb regeneration. Science,362(6413): eaaq0681. DOI BibTeX Endnote | |
| Hajdinjak, M. (2018). The Middle to Upper Paleolithic transition in Europe: Studies of ancient DNA from early modern humans and late Neandertals. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Hajdinjak, M., Fu, Q., Hübner, A., Petr, M., Mafessoni, F., Grote, S., Skoglund, P., Narasimham, V., Rougier, H., Crevecoeur, I., Semal, P., Soressi, M., Talamo, S., Hublin, J.-J., Gušic, I., Kucan, Ž., Rudan, P., Golovanova, L. V., Doronichev, V. B., Posth, C., Krause, J., Korlevic, P., Nagel, S., Nickel, B., Slatkin, M., Patterson, N., Reich, D., Prüfer, K., Meyer, M., Pääbo, S., & Kelso, J. (2018). Reconstructing the genetic history of late Neanderthals. Nature,555(7698), 652-656. DOI BibTeX Endnote | |
| He, Z., & Yu, Q. (2018). Identification and characterization of functional modules reflecting transcriptome transition during human neuron maturation. BMC Genomics,19: 262. Open Access DOI BibTeX Endnote | |
| Heide, M., Huttner, W. B., & Mora-Bermúdez, F. (2018). Brain organoids as models to study human neocortex development and evolution. Current Opinion in Cell Biology,55, 8-16. DOI BibTeX Endnote | |
| Helm, C., Beckers, P., Bartolomaeus, T., Drukewitz, S. H., Kourtesis, I., Weigert, A., Purschke, G., Worsaae, K., Struck, T. H., & Bleidorn, C. (2018). Convergent evolution of the ladder-like ventral nerve cord in Annelida. Frontiers in Zoology,15: 36. Open Access DOI BibTeX Endnote | |
| Henne, K., Schilling, H., Stoneking, M., Conrads, G., & Horz, H.-P. (2018). Sex-specific differences in the occurrence of Fusobacterium nucleatum subspecies and Fusobacterium periodonticum in the oral cavity. Oncotarget,9(29), 20631-20639. DOI BibTeX Endnote | |
| Hernandez-Rodriguez, J., Arandjelovic, M., Lester, J. D., de Filippo, C., Weihmann, A., Meyer, M., Angedakin, S., Casals, F., Navarro, A., Vigilant, L., Kühl, H. S., Langergraber, K., Boesch, C., Hughes, D., & Marques-Bonet, T. (2018). The impact of endogenous content, replicates and pooling on genome capture from faecal samples. Molecular Ecology Resources,18(2), 319-333. Open Access DOI BibTeX Endnote | |
| Hershkovitz, I., & Slon, V. (2018). Levantine fossil record. In W. Trevathan ( DOI BibTeX Endnote | |
| Hu, H., Liu, J.-M., Hu, Z., Jiang, X., Yang, X., Li, J., Zhang, Y., Yu, H., & Khaitovich, P. (2018). Recently evolved tumor suppressor transcript TP73-AS1 functions as sponge of human-specific miR-941. Molecular Biology and Evolution,35(5), 1063-1077. Open Access DOI BibTeX Endnote | |
| Kageyama, J., Wollny, D., Treutlein, B., & Camp, J. G. (2018). ShinyCortex: Exploring single-cell transcriptome data from the developing human cortex. Frontiers in Neuroscience,12: 315. Open Access DOI BibTeX Endnote | |
| Kanis, P. (2018). Screening for high cleavage Cas9 to improve CRISPR genome editing. Master Thesis, Universität, Leipzig. BibTeX Endnote | |
| Karow, M., Camp, J. G., Falk, S., Gerber, T., Pataskar, A., Gac-Santel, M., Kageyama, J., Brazovskaja, A., Garding, A., Fan, W., Riedemann, T., Casamassa, A., Smiyakin, A., Schichor, C., Goetz, M., Tiwari, V. K., Treutlein, B., & Berninger, B. (2018). Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program. Nature Reviews Neurology,21, 932-940. DOI BibTeX Endnote | |
| Key, F. M., Abdul-Aziz, M. A., Mundry, R., Peter, B. M., Sekar, A., D'Amato, M., Dennis, M. Y., Schmidt, J. M., & Andrés, A. M. (2018). Human local adaptation of the TRPM8 cold receptor along a latitudinal cline. PLoS Genetics,14(5): e1007298. Open Access DOI BibTeX Endnote | |
| Khrameeva, E., Kurochkin, I., Bozek, K., Giavalisco, P., & Khaitovich, P. (2018). Lipidome Evolution in Mammalian Tissues. Molecular Biology and Evolution,35(8), 1947-1957. DOI BibTeX Endnote | |
| Klotz, B., Kneitz, S., Regensburger, M., Hahn, L., Dannemann, M., Kelso, J., Nickel, B., Lu, Y., Boswell, W., Postlethwait, J., Warren, W., Kunz, M., Walter, R. B., & Schartl, M. (2018). Expression signatures of early-stage and advanced medaka melanomas. Comparative Biochemistry and Physiology Part C: Toxicology & Pharmacology,208, 20-28. DOI BibTeX Endnote | |
| Kolora, S. R. R., Weigert, A., Saffari, A., Kehr, S., Walter Costa, M. B., Spröer, C., Indrischek, H., Chintalapati, M., Lohse, K., Doose, G., Overmann, J., Bunk, B., Bleidorn, C., Grimm-Seyfarth, A., Henle, K., Nowick, K., Faria, R., Stadler, P. F., & Schlegel, M. (2018). Divergent evolution in the genomes of closely related lacertids, Lacerta viridis and L. bilineata, and implications for speciation. GigaScience,8(2): giy160. Open Access DOI BibTeX Endnote | |
| Korlević, P. (2018). Development of sample preparation techniques for the molecular analysis of ancient skeletal remains. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Korlevic, P., Talamo, S., & Meyer, M. (2018). A combined method for DNA analysis and radiocarbon dating from a single sample. Scientific Reports,8(1): 4127. Open Access DOI BibTeX Endnote | |
| Kunz, M., Löffler-Wirth, H., Dannemann, M., Willscher, E., Doose, G., Kelso, J., Kottek, T., Nickel, B., Hopp, L., Landsberg, J., Hoffmann, S., Tüting, T., Zigrino, P., Mauch, C., Utikal, J., Ziemer, M., Schulze, H.-J., Hölzel, M., Roesch, A., Kneitz, S., Meierjohann, S., Bosserhoff, A., Binder, H., & Schartl, M. (2018). RNA-seq analysis identifies different transcriptomic types and developmental trajectories of primary melanomas. Oncogene,37, 6136-6151. DOI BibTeX Endnote | |
| Kutanan, W., Kampuansai, J., Brunelli, A., Ghirotto, S., Pittayaporn, P., Ruangchai, S., Schröder, R., Macholdt, E., Srikummool, M., Kangwanpong, D., Hübner, A., Arias, L., & Stoneking, M. (2018). New insights from Thailand into the maternal genetic history of Mainland Southeast Asia. European Journal of Human Genetics,26, 898-911. Open Access DOI BibTeX Endnote | |
| Kutanan, W., Kampuansai, J., Changmai, P., Flegontov, P., Schröder, R., Macholdt, E., Hübner, A., Kangwanpong, D., & Stoneking, M. (2018). Contrasting maternal and paternal genetic variation of hunter-gatherer groups in Thailand. Scientific Reports,8: 1536. Open Access DOI BibTeX Endnote | |
| Lamnidis, T. C., Majander, K., Jeong, C., Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., Weihmann, A., Sajantila, A., Kelso, J., Pääbo, S., Onkamo, P., Haak, W., Krause, J., & Schiffels, S. (2018). Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature Communications,9: 5018. Open Access DOI BibTeX Endnote | |
| Loosdrecht, M. v. d., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Ayinuer-Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., Amzazi, S., Hublin, J.-J., Pääbo, S., Schiffels, S., Meyer, M., Haak, W., Jeong, C., & Krause, J. (2018). Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science,360(6388), 548-552. DOI BibTeX Endnote | |
| Mafessoni, F., Prasad, R. B., Groop, L., Hansson, O., & Prüfer, K. (2018). Turning Vice into Virtue: Using Batch-Effects to Detect Errors in Large Genomic Data Sets. Genome Biology and Evolution,10(10), 2697-2708. Open Access DOI BibTeX Endnote | |
| Mazin, P. V., Jiang, X., Fu, N., Han, D., Guo, M., Gelfand, M. S., & Khaitovich, P. (2018). Conservation, evolution, and regulation of splicing during prefrontal cortex development in humans, chimpanzees, and macaques. RNA,24(4), 585-596. DOI BibTeX Endnote | |
| Meyer, D., Aguiar, V. R. C., Bitarello, B. D., Brandt, D. Y. C., & Nunes, K. (2018). A genomic perspective on HLA evolution. Immunogenetics,70(1), 5-27. Open Access DOI BibTeX Endnote | |
| Oliveira, S., Fehn, A.-M., Aço, T., Lages, F., Gayà-Vidal, M., Pakendorf, B., Stoneking, M., & Rocha, J. (2018). Matriclans shape populations: Insights from the Angolan Namib Desert into the maternal genetic history of southern Africa. American Journal of Physical Anthropology,165(3), 518-535. DOI BibTeX Endnote | |
| Paijmans, J. L. A., Barlow, A., Förster, D. W., Henneberger, K., Meyer, M., Nickel, B., Nagel, D., Havmøller, R. W., Baryshnikov, G. F., Joger, U., Rosendahl, W., & Hofreiter, M. (2018). Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations. BMC Evolutionary Biology,18: 156. Open Access DOI BibTeX Endnote | |
| Pierron, D., Heiske, M., Razafindrazaka, H., Pereda-loth, V., Sanchez, J., Alva, O., Arachiche, A., Boland, A., Olaso, R., Deleuze, J.-F., Ricaut, F.-X., Rakotoarisoa, J.-A., Radimilahy, C., Stoneking, M., & Letellier, T. (2018). Strong selection during the last millennium for African ancestry in the admixed population of Madagascar. Nature Communications,9: 932. Open Access DOI BibTeX Endnote | |
| Prüfer, K. (2018). snpAD: An ancient DNA genotype caller. Bioinformatics,34(24), 4165-4171. Open Access DOI BibTeX Endnote | |
| Pugach, I., Duggan, A. T., Merriwether, D. A., Friedlaender, F. R., Friedlaender, J. S., & Stoneking, M. (2018). The gateway from near into remote Oceania: New insights from genome-wide data. Molecular Biology and Evolution,35(4), 871-886. Open Access DOI BibTeX Endnote | |
| Renaud, G. (2018). glactools: A command-line toolset for the management of genotype likelihoods and allele counts. Bioinformatics,34(8), 1398-1400. DOI BibTeX Endnote | |
| Riesenberg, S., & Maricic, T. (2018). Targeting repair pathways with small molecules increases precise genome editing in pluripotent stem cells. Nature Communications,9: 2164. Open Access DOI BibTeX Endnote | |
| Rohland, N., Glocke, I., Ayinuer-Petri, A., & Meyer, M. (2018). Extraction of highly degraded DNA from ancient bones, teeth and sediments for high-throughput sequencing. Nature Protocols,13, 2447-2461. DOI BibTeX Endnote | |
| Sarangi, G. K., Romagné, F., & Castellano, S. (2018). Distinct patterns of selection in selenium-dependent genes between land and aquatic vertebrates. Molecular Biology and Evolution,35(7), 1744-1756. DOI BibTeX Endnote | |
| Slon, V., Mafessoni, F., Vernot, B., de Filippo, C., Grote, S., Viola, T. B., Hajdinjak, M., Peyrégne, S., Nagel, S., Brown, S., Douka, K., Higham, T., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Kelso, J., Meyer, M., Prüfer, K., & Pääbo, S. (2018). The genome of the offspring of a Neanderthal mother and a Denisovan father. Nature,561(7721), 113-116. DOI BibTeX Endnote | |
| Stoneking, M. (2018). Mitochondrial DNA. In W. Trevathan ( DOI BibTeX Endnote | |
| Tavano, S., Taverna, E., Kalebic, N., Haffner, C., Namba, T., Dahl, A., Wilsch-Bräuninger, M., Paridaen, J. T. M. L., & Huttner, W. B. (2018). Insm1 Induces Neural Progenitor Delamination in Developing Neocortex via Downregulation of the Adherens Junction Belt-Specific Protein Plekha7. Neuron,97(6): e8, pp. 1299-1314. DOI BibTeX Endnote | |
| Tucci, S., Vohr, S. H., McCoy, R. C., Vernot, B., Robinson, M. R., Barbieri, C., Nelson, B. J., Fu, W., Purnomo, G. A., Sudoyo, H., Eichler, E. E., Barbujani, G., Visscher, P. M., Akey, J. M., & Green, R. E. (2018). Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia. Science,361(6401), 511-516. DOI BibTeX Endnote | |
| Vaid, S., Camp, J. G., Hersemann, L., Oegema, C. E., Heninger, A.-K., Winkler, S., Brandl, H., Sarov, M., Treutlein, B., Huttner, W. B., & Namba, T. (2018). A novel population of Hopx-dependent basal radial glial cells in the developing mouse neocortex. Development,145(20): dev169276. DOI BibTeX Endnote | |
| Van Laer, B., Kapp, U., Soler-Lopez, M., Moczulska, K., Pääbo, S., Leonard, G., & Mueller-Dieckmann, C. (2018). Molecular comparison of Neanderthal and Modern Human adenylosuccinate lyase. Scientific Reports,8: 18008. Open Access DOI BibTeX Endnote | |
| Vernot, B., & Pääbo, S. (2018). The predecessors within.. (Commentary). Cell,173(1), 6-7. DOI BibTeX Endnote | |
| Xiong, J., Jiang, X., Ditsiou, A., Gao, Y., Sun, J., Lowenstein, E. D., Huang, S., & Khaitovich, P. (2018). Predominant patterns of splicing evolution on human, chimpanzee and macaque evolutionary lineages. Human Molecular Genetics,27(8), 1474-1485. DOI BibTeX Endnote | |
| Yu, Q., He, Z., Zubkov, D., Huang, S., Kurochkin, I., Yang, X., Halene, T., Willmitzer, L., Giavalisco, P., Akbarian, S., & Khaitovich, P. (2018). Lipidome alterations in human prefrontal cortex during development, aging, and cognitive disorders (advance online). Molecular Psychiatry. Open Access DOI BibTeX Endnote |
2017
| Arai, Y., & Taverna, E. (2017). Neural progenitor cell polarity and cortical development. Frontiers in Cellular Neuroscience,11: 384. Open Access DOI BibTeX Endnote | |
| Barbieri, C., Sandoval, J. R., Valqui, J., Shimelman, A., Ziemendorff, S., Schröder, R., Geppert, M., Roewer, L., Gray, R., Stoneking, M., Fujita, R., & Heggarty, P. (2017). Enclaves of genetic diversity resisted Inca impacts on population history. Scientific Reports,7: 17411. Open Access DOI BibTeX Endnote | |
| Bozek, K., Khrameeva, E. E., Reznick, J., Omerbašic, D., Bennett, N. C., Lewin, G. R., Azpurua, J., Gorbunova, V., Seluanov, A., Regnard, P., Wanert, F., Marchal, J., Pifferi, F., Aujard, F., Liu, Z., Shi, P., Pääbo, S., Schröder, F., Willmitzer, L., Giavalisco, P., & Khaitovich, P. (2017). Lipidome determinants of maximal lifespan in mammals. Scientific Reports,7: 5. Open Access DOI BibTeX Endnote | |
| Cagan, A. (2017). Comparative genomic approaches to human evolutionary history. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Camp, J. G., & Treutlein, B. (2017). Advances in mini-brain technology. Nature,545(7652), 39-40. DOI BibTeX Endnote | |
| Camp, J. G., & Treutlein, B. (2017). Human organomics: A fresh approach to understanding human development using single-cell transcriptomics. Development,144(9), 1584-1587. DOI BibTeX Endnote | |
| Camp, J. G., Sekine, K., Gerber, T., Loeffler-Wirth, H., Binder, H., Gac, M., Kanton, S., Kageyama, J., Damm, G., Seehofer, D., Belicova, L., Bickle, M., Barsacchi, R., Okuda, R., Yoshizawa, E., Kimura, M., Ayabe, H., Taniguchi, H., Takebe, T., & Treutlein, B. (2017). Multilineage communication regulates human liver bud development from pluripotency. Nature,546(7659), 533-538. DOI BibTeX Endnote | |
| Chang, D., Knapp, M., Enk, J., Lippold, S., Kircher, M., Lister, A., MacPhee, R. D. E., Widga, C., Czechowski, P., Sommer, R., Hodges, E., Stümpel, N., Barnes, I., Dalén, L., Derevianko, A., Germonpré, M., Hillebrand-Voiculescu, A., Constantin, S., Kuznetsova, T., Mol, D., Rathgeber, T., Rosendahl, W., Tikhonov, A. N., Willerslev, E., Hannon, G., Lalueza-Fox, C., Joger, U., Poinar, H., Hofreiter, M., & Shapiro, B. (2017). The evolutionary and phylogeographic history of woolly mammoths: A comprehensive mitogenomic analysis. Scientific Reports,7: 44585. Open Access DOI BibTeX Endnote | |
| Chintalapati, M., Dannemann, M., & Prüfer, K. (2017). Using the Neandertal genome to study the evolution of small insertions and deletions in modern humans. BMC Evolutionary Biology,17: 179. Open Access DOI BibTeX Endnote | |
| Cohen, H., Kugel, C., May, H., Medlej, B., Stein, D., Slon, V., Brosh, T., & Hershkovitz, I. (2017). The effect of impact tool geometry and soft material covering on long bone fracture patterns in children. International Journal of Legal Medicine,131(4), 1011-1021. DOI BibTeX Endnote | |
| Cohen, H., Kugel, C., May, H., Medlej, B., Stein, D., Slon, V., Brosh, T., & Hershkovitz, I. (2017). The influence of impact direction and axial loading on the bone fracture pattern. Forensic Science International,277, 197-206. DOI BibTeX Endnote | |
| Dannemann, M., & Kelso, J. (2017). The contribution of Neanderthals to phenotypic variation in modern humans. The American Journal of Human Genetics,101(4), 578-589. Open Access DOI BibTeX Endnote | |
| Dannemann, M., Prüfer, K., & Kelso, J. (2017). Functional implications of Neandertal introgression in modern humans. Genome Biology,18: 61. Open Access DOI BibTeX Endnote | |
| Devièse, T., Karavanic, I., Comeskey, D., Kubiak, C., Korlevic, P., Hajdinjak, M., Radovic, S., Procopio, N., Buckley, M., Pääbo, S., & Higham, T. (2017). Direct dating of Neanderthal remains from the site of Vindija Cave and implications for the Middle to Upper Paleolithic transition. Proceedings of the National Academy of Sciences of the United States of America,114(40), 10606-10611. Open Access DOI BibTeX Endnote | |
| Dönertas, H. M., Izgi, H., Kamacioglu, A., He, Z., Khaitovich, P., & Somel, M. (2017). Gene expression reversal toward pre-adult levels in the aging human brain and age-related loss of cellular identity. Scientific Reports,7(1): 5894. Open Access DOI BibTeX Endnote | |
| Douka, K., Slon, V., Stringer, C., Potts, R., Hübner, A., Meyer, M., Spoor, F., Pääbo, S., & Higham, T. (2017). Direct radiocarbon dating and DNA analysis of the Darra-i-Kur (Afghanistan) human temporal bone. Journal of Human Evolution,107, 86-93. DOI BibTeX Endnote | |
| Francioli, L. C., Cretu-Stancu, M., Garimella, K. V., Fromer, M., Kloosterman, W. P., Genome of the Netherlands consortium, including, Li, M., Stoneking, M., Samocha, K. E., Neale, B. M., Daly, M. J., Banks, E., DePristo, M. A.., & de Bakker, P. I. (2017). A framework for the detection of de novo mutations in family-based sequencing data. European Journal of Human Genetics,25, 227-223. Open Access DOI BibTeX Endnote | |
| Froese, D., Stiller, M., Heintzman, P. D., Reyes, A. V., Zazula, G. D., Soares, A. E. R., Meyer, M., Hall, E., Jensen, B. J. L., Arnold, L. J., MacPhee, R. D. E., & Shapiro, B. (2017). Fossil and genomic evidence constrains the timing of bison arrival in North America. Proceedings of the National Academy of Sciences of the United States of America,114(13), 3457-3462. DOI BibTeX Endnote | |
| Gansauge, M.-T. (2017). Method improvement for the preparation of ancient DNA seqencing libraries. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Gansauge, M.-T., Gerber, T., Glocke, I., Korlevic, P., Lippik, L., Nagel, S., Riehl, L. M., Schmidt, A., & Meyer, M. (2017). Single-stranded DNA library preparation from highly degraded DNA using T4 DNA ligase. Nucleic Acids Research,45(10): e79. Open Access DOI BibTeX Endnote | |
| Gerber, T., Willscher, E., Loeffler-Wirth, H., Hopp, L., Schadendorf, D., Schartl, M., Anderegg, U., Camp, G., Treutlein, B., Binder, H., & Kunz, M. (2017). Mapping heterogeneity in patient-derived melanoma cultures by single-cell RNA-seq. Oncotarget,8(1), 846-862. Open Access DOI BibTeX Endnote | |
| Glocke, I., & Meyer, M. (2017). Extending the spectrum of DNA sequences retrieved from ancient bones and teeth. Genome Research,27, 1230-1237. DOI BibTeX Endnote | |
| He, Z., Han, D., Efimova, O., Guijarro, P., Yu, Q., Oleksiak, A., Jiang, S., Anokhin, K., Velichkovsky, B., Grünewald, S., & Khaitovich, P. (2017). Comprehensive transcriptome analysis of neocortical layers in humans, chimpanzees and macaques. Nature Neuroscience,20(6), 886-895. DOI BibTeX Endnote | |
| Jinam, T. A., Phipps, M. E., Aghakhanian, F., Majumder, P. P., Datar, F., Stoneking, M., Sawai, H., Nishida, N., Tokunaga, K., Kawamura, S., Omoto, K., & Saitou, N. (2017). Discerning the origins of the Negritos, first Sundaland people: Deep divergence and archaic admixture. Genome Biology and Evolution,9(8), 2013-2022. Open Access DOI BibTeX Endnote | |
| Kelso, J., Kovats, D. E., Leard, S., & Orengo, C. (2017). ISMB/ECCB 2017 proceedings paper comitee. Bioinformatics,33, I3-I4. Open Access DOI BibTeX Endnote | |
| Kolora, S. R., Faria, R., Weigert, A., Schaffer, S., Grimm, A., Henle, K., Sahyoun, A. H., Stadler, P. F., Nowick, K., Bleidorn, C., & Schlegel, M. (2017). The complete mitochondrial genome of Lacerta bilineata and comparison with its closely related congener L. Viridis. Mitochondrial DNA Part A,28(1), 116-118. DOI BibTeX Endnote | |
| Kozhemyakina, R. V., Shikhevich, S. G., Cagan, A., & Gulevich, R. G. (2017). Effect of single ethanol administration on the behavior, consumption, and preference of ethanol in tame and aggressive rats. Russian Journal of Genetics: Applied Research,7(1), 93-99. DOI BibTeX Endnote | |
| Kuo, T.-M., Huang, C.-M., Tu, H.-P., Ko, A.-M.-S., Wang, S.-J., Lee, C.-P., & Ko, Y.-C. (2017). URAT1 inhibition by ALPK1 is associated with uric acid homeostasis. Rheumatology,56(4), 654-659. DOI BibTeX Endnote | |
| Kupczik, K., Cagan, A., Brauer, S., & Fischer, M. S. (2017). The dental phenotype of hairless dogs with FOXI3 haploinsufficiency. Scientific Reports,7: 5459. Open Access DOI BibTeX Endnote | |
| Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics,136(1), 85-98. Open Access DOI BibTeX Endnote | |
| Kutanan, W., Kampuansai, J., Srikummool, M., Kangwanpong, D., Ghirotto, S., Brunelli, A., & Stoneking, M. (2017). Erratum to: Complete mitochondrial genomes of Thai and Lao populations indicate an ancient origin of Austroasiatic groups and demic diffusion in the spread of Tai–Kadai languages. Human Genetics,136(6), 803-803. DOI BibTeX Endnote | |
| Li, Q., Bozek, K., Xu, C., Guo, Y., Sun, J., Pääbo, S., Sherwood, C. C., Hof, P. R., Ely, J. J., Li, Y., Willmitzer, L., Giavalisco, P., & Khaitovich, P. (2017). Changes in lipidome composition during brain development in humans, chimpanzees, and macaque monkeys. Molecular Biology and Evolution,34(5), 1155-1166. Open Access DOI BibTeX Endnote | |
| Mafessoni, F., & Prüfer, K. (2017). Better support for a small effective population size of Neandertals and a long shared history of Neandertals and Denisovans. Proceedings of the National Academy of Sciences,114(48), E10256-E10257. DOI BibTeX Endnote | |
| Martin, M. D., Jay, F., Castellano, S., & Slatkin, M. (2017). Determination of genetic relatedness from low-coverage human genome sequences using pedigree simulations. Molecular Ecology,26(16), 4145-4157. DOI BibTeX Endnote | |
| Meyer, M., Palkopoulou, E., Baleka, S., Stiller, M., Penkman, K. E. H., Alt, K. W., Ishida, Y., Mania, D., Mallick, S., Meijer, T., Meller, H., Nagel, S., Nickel, B., Ostritz, S., Rohland, N., Schauer, K., Schüler, T., Roca, A. L., Reich, D., Shapiro, B., & Hofreiter, M. (2017). Palaeogenomes of Eurasian straight-tusked elephants challenge the current view of elephant evolution. eLife, e25413. DOI BibTeX Endnote | |
| Nissen, J. D., Lykke, K., Bryk, J., Stridh, M. H., Zaganas, I., Skytt, D. M., Schousboe, A., Bak, L. K., Enard, W., Pääbo, S., & Waagepetersen, H. S. (2017). Expression of the human isoform of glutamate dehydrogenase, hGDH2, augments TCA cycle capacity and oxidative metabolism of glutamate during glucose deprivation in astrocytes. Glia,65(3), 474-488. DOI BibTeX Endnote | |
| Noureen, A., Ronke, C., Khalifa, M., Halbwax, M., Fischer, A., Andre, C., Atencia, R., Garriga, R., Mugisha, L., Ceglarek, U., Thiery, J., Utermann, G., & Schmidt, K. (2017). Significant differentiation in the apolipoprotein(a)/lipoprotein(a) trait between chimpanzees from Western and Central Africa. American Journal of Primatology,79(9): e22683. DOI BibTeX Endnote | |
| Peyrégne, S., Dannemann, M., & Prüfer, K. (2017). Detecting ancient positive selection in humans using extended lineage sorting. Genome Research,27(9), 1563-1572. DOI BibTeX Endnote | |
| Pierron, D., Heiske, M., Razafindrazaka, H., Rakoto, I., Rabetokotany, N., Ravololomanga, B., Rakotozafy, L.-M.-A., Rakotomalala, M. M., Razafiarivony, M., Rasoarifetra, B., Raharijesy, M. A., Razafindralambo, L., Ramilisonina,.-., Fanony, F., Lejamble, S., Thomas, O., Abdallah, A. M., Rocher, C., Arachiche, A., Tonaso, L., Pereda-loth, V., Schiavinato, S., Brucato, N., Ricaut, F.-X., Kusuma, P., Sudoyo, H., Ni, S., Boland, A., Deleuze, J.-F., Beaujard, P., Grange, P., Adelaar, S., Stoneking, M., Rakotoarisoa, J.-A., Radimilahy, C., & Letellier, T. (2017). Genomic landscape of human diversity across Madagascar. Proceedings of the National Academy of Sciences of the United States of America,114(32), E6498-E6506. DOI BibTeX Endnote | |
| Prüfer, K., Filippo, C. d., Grote, S., Mafessoni, F., Korlevic, P., Hajdinjak, M., Vernot, B., Skov, L., Hsieh, P., Peyrégne, S., Reher, D., Hopfe, C., Nagel, S., Maricic, T., Fu, Q., Theunert, C., Rogers, R., Skoglund, P., Chintalapati, M., Dannemann, M., Nelson, B. J., Key, F. M., Rudan, P., Kucan, Ž., Gušic, I., Golovanova, L. V., Doronichev, V. B., Patterson, N., Reich, D., Eichler, E. E., Slatkin, M., Schierup, M. H., Andrés, A. M., Kelso, J., Meyer, M., & Pääbo, S. (2017). A high-coverage Neandertal genome from Vindija Cave in Croatia. Science,358(6363), 655-658. DOI BibTeX Endnote | |
| Reher, D., Klink, B., Deutsch, A., & Voss-Böhme, A. (2017). Cell adhesion heterogeneity reinforces tumour cell dissemination: Novel insights from a mathematical model. Biology Direct,12: 18. Open Access DOI BibTeX Endnote | |
| Santika, T., Ancrenaz, M., Wilson, K. A., Spehar, S., Abram, N., Banes, G. L., Campbell-Smith, G., Curran, L., d’Arcy, L., Delgado, R. A., Erman, A., Goossens, B., Hartanto, H., Houghton, M., Husson, S. J., Kühl, H. S., Lackman, I., Leiman, A., Sanchez, K. L., Makinuddin, N., Marshall, A. J., Meididit, A., Mengersen, K., Musnanda, Nardiyono, Nurcahyo, A., Odom, K., Panda, A., Prasetyo, D., Purnomo, Rafiastanto, A., Raharjo, S., Ratnasari, D., Russon, A. E., Santana, A. H., Santoso, E., Sapari, I., Sihite, J., Suyoko, A., Tjiu, A., Utami-Atmoko, S. S., Schaik, C. P. v., Voigt, M., Wells, J., Wich, S. A., Willems, E. P., & Meijaard, E. (2017). First integrative trend analysis for a great ape species in Borneo. Scientific Reports,7(1): 4839. Open Access DOI BibTeX Endnote | |
| Sarangi, G. K., White, L., & Castellano, S. (2017). Genetic adaptation and Selenium uptake in vertebrates. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley. DOI BibTeX Endnote | |
| Sarkar, A., Stoneking, M., & Nandineni, M. R. (2017). Unraveling the human salivary microbiome diversity in Indian populations. PLoS One,12(9): e0184515. Open Access DOI BibTeX Endnote | |
| Schmidt, J. M., Battlay, P., Gledhill-Smith, R. S., Good, R. T., Lumb, C., Fournier-Level, A., & Robin, C. (2017). Insights into DDT resistance from the drosophila melanogaster genetic reference panel. Genetics,207(3), 1181-1193. Open Access DOI BibTeX Endnote | |
| Singh, N., Albert, F. W., Plyusnina, I., Trut, L., Pääbo, S., & Harvati, K. (2017). Facial shape differences between rats selected for tame and aggressive behaviors. PLoS One,12(4): e0175043. Open Access DOI BibTeX Endnote | |
| Skoglund, P., Thompson, J. C., Prendergast, M. E., Mittnik, A., Sirak, K., Hajdinjak, M., Salie, T., Rohland, N., Mallick, S., Peltzer, A., Heinze, A., Olalde, I., Ferry, M., Harney, E., Michel, M., Stewardson, K., Cerezo-Román, J. I., Chiumia, C., Crowther, A., Gomani-Chindebvu, E., Gidna, A. O., Grillo, K. M., Helenius, I. T., Hellenthal, G., Helm, R., Horton, M., López, S., Mabulla, A. Z. P., Parkington, J., Shipton, C., Thomas, M. G., Tibesasa, R., Welling, M., Hayes, V. M., Kennett, D. J., Ramesar, R., Meyer, M., Pääbo, S., Patterson, N., Morris, A. G., Boivin, N., Pinhasi, R., Krause, J., & Reich, D. (2017). Reconstructing Prehistoric African Population Structure. Cell,171(1), 59-71.e21. DOI BibTeX Endnote | |
| Slon, V. (2017). Studies of archaic hominin DNA recovered from skeletal remains and archaeological sediments. PhD Thesis, Universität Leipzig, Leipzig. BibTeX Endnote | |
| Slon, V., Hopfe, C., Weiß, C. L., Mafessoni, F., de la Rasilla, M., Lalueza-Fox, C., Rosas, A., Soressi, M., Knul, M. V., Miller, R., Stewart, J. R., Derevianko, A. P., Jacobs, Z., Li, B., Roberts, R. G., Shunkov, M. V., de Lumley, H., Perrenoud, C., Gušic, I., Kucan, Ž., Rudan, P., Ayinuer-Petri, A., Essel, E., Nagel, S., Nickel, B., Schmidt, A., Prüfer, K., Kelso, J., Burbano, H. A., Pääbo, S., & Meyer, M. (2017). Neandertal and Denisovan DNA from Pleistocene sediments. Science,356(6338), 605-608. DOI BibTeX Endnote | |
| Slon, V., Viola, B., Renaud, G., Gansauge, M.-T., Benazzi, S., Sawyer, S., Hublin, J.-J., Shunkov, M. V., Derevianko, A. P., Kelso, J., Prüfer, K., Meyer, M., & Pääbo, S. (2017). A fourth Denisovan individual. Science Advances,3(7): e1700186. Open Access DOI BibTeX Endnote | |
| Sohail, M., Vakhrusheva, O. A., Sul, J. H., Pulit, S. L., Francioli, L. C., Genome of the Netherlands Consortium, including, Li, M., Stoneking, M., Alzheimer’s Disease Neuroimaging Initiative, van den Berg, L. H., Veldink, J. H., de Bakker, P. I. W., Bazykin, G. A., Kondrashov, A. S., & Sunyaev, S. R. (2017). Negative selection in humans and fruit flies involves synergistic epistasis. Science,356(6337), 539-542. DOI BibTeX Endnote | |
| Stoneking, M. (2017).An introduction to molecular anthropology. New York [u.a.]: Wiley. BibTeX Endnote | |
| Stoneking, M. (2017). Genes, culture, and human evolution. OBM Genetics,1(2). Open Access DOI BibTeX Endnote | |
| Sundaramoorthy, R., Hughes, A. L., Singh, V., Wiechens, N., Ryan, D. P., El-Mkami, H., Petoukhov, M., Svergun, D. I., Treutlein, B., Quack, S., Fischer, M., Michaelis, J., Böttcher, B., Norman, D. G., & Owen-Hughes, T. (2017). Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes. eLife,6: e22510. Open Access DOI BibTeX Endnote | |
| Theunert, C., & Slatkin, M. (2017). Distinguishing recent admixture from ancestral population structure. Genome Biology and Evolution,9(3), 427-437. DOI BibTeX Endnote | |
| Theunert, C., Racimo, F., & Slatkin, M. (2017). Joint estimation of relatedness coefficients and allele frequencies from ancient samples. Genetics,206(2), 1025-1035. DOI BibTeX Endnote | |
| Wapinski, O. L., Lee, Q. Y., Chen, A. C., Li, R., Corces, M. R., Ang, C. E., Treutlein, B., Xiang, C., Baubet, V., Suchy, F. P., Sankar, V., Sim, S., Quake, S. R., Dahmane, N., Wernig, M., & Chang, H. Y. (2017). Rapid chromatin switch in the direct reprogramming of fibroblasts to neurons. Cell Reports,20(13), 3236-3247. DOI BibTeX Endnote | |
| Yang, M. A., Gao, X., Theunert, C., Tong, H., Ayinuer-Petri, A., Nickel, B., Slatkin, M., Meyer, M., Pääbo, S., Kelso, J., & Fu, Q. (2017). 40,000-year-old individual from Asia provides insight into early population structure in Eurasia. Current Biology,27(20), 3202-3208. DOI BibTeX Endnote |
2016
| Barbieri, C., Hübner, A., Macholdt, E., Ni, S., Lippold, S., Schröder, R., Mpoloka, S. W., Purps, J., Roewer, L., Stoneking, M., & Pakendorf, B. (2016). Refining the Y chromosome phylogeny with southern African sequences. Human Genetics,135(5), 541-553. Open Access DOI BibTeX Endnote | |
| Beirer, E. (2016). Optimierung von Methoden für die Sequenzierung alter DNA. Master Thesis, Universität, Leipzig. BibTeX Endnote | |
| Brown, S., Higham, T., Slon, V., Pääbo, S., Meyer, M., Douka, K., Brock, F., Comeskey, D., Procopio, N., Shunkov, M., Derevianko, A., & Buckley, M. (2016). Identification of a new hominin bone from Denisova Cave, Siberia using collagen fingerprinting and mitochondrial DNA analysis. Scientific Reports,6: 23559. Open Access DOI BibTeX Endnote | |
| Cagan, A., & Blass, T. (2016). Identification of genomic variants putatively targeted by selection during dog domestication. BMC Evolutionary Biology,16: 10. Open Access DOI BibTeX Endnote | |
| Cagan, A., Theunert, C., Laayouni, H., Santpere, G., Pybus, M., Casals, F., Prüfer, K., Navarro, A., Marques-Bonet, T., Bertranpetit, J., & Andrés, A. M. (2016). Natural selection in the great apes. Molecular Biology and Evolution,33(12), 3268-3283. Open Access DOI BibTeX Endnote | |
| Carmody, R. N., Dannemann, M., Briggs, A. W., Nickel, B., Groopman, E. E., Wrangham, R. W., & Kelso, J. (2016). Genetic evidence of human adaptation to a cooked diet. Genome biology and evolution,8(4), 1091-1103. Open Access DOI BibTeX Endnote | |
| Chen, Y.-C., Kuo, H.-Y., Bornschein, U., Takahashi, H., Chen, S.-Y., Lu, K.-M., Yang, H.-Y., Chen, G.-M., Lin, J.-R., Lee, Y.-H., Chou, Y.-C., Cheng, S.-J., Chien, C.-T., Enard, W., Hevers, W., Pääbo, S., Graybiel, A. M., & Liu, F.-C. (2016). Foxp2 controls synaptic wiring of corticostriatal circuits and vocal communication by opposing Mef2c. Nature Neuroscience,19(11), 1513-1522. DOI BibTeX Endnote | |
| Cohen, H., Kugel, C., May, H., Medlej, B., Stein, D., Slon, V., Hershkovitz, I., & Brosh, T. (2016). The impact velocity and bone fracture pattern: Forensic perspective. Forensic Science International,266, 54-62. DOI BibTeX Endnote | |
| Dannemann, M., Andrés, A. M., & Kelso, J. (2016). Introgression of Neandertal- and Denisovan-like haplotypes contributes to adaptive variation in human toll-like receptors. The American Journal of Human Genetics,98(1), 22-33. Open Access DOI BibTeX Endnote | |
| de Filippo, C., Key, F. M., Ghirotto, S., Benazzo, A., Meneu, J. R., Weihmann, A., NISC Comparative Sequence Program, Parra, G., Green, E. D., & Andrés, A. M. (2016). Recent selection changes in human genes under long-term balancing selection. Molecular Biology and Evolution,33(6), 1435-1447. DOI BibTeX Endnote | |
| de Manuel, M., Kuhlwilm, M., Frandsen, P., Sousa, V. C., Desai, T., Prado-Martinez, J., Hernandez-Rodriguez, J., Dupanloup, I., Lao, O., Hallast, P., Schmidt, J. M., Heredia-Genestar, J. M., Benazzo, A., Barbujani, G., Peter, B. M., Kuderna, L. F. K., Casals, F., Angedakin, S., Arandjelovic, M., Boesch, C., Kühl, H. S., Vigilant, L., Langergraber, K., Novembre, J., Gut, M., Gut, I., Navarro, A., Carlsen, F., Andrés, A. M., Siegismund, H. R., Scally, A., Excoffier, L., Tyler-Smith, C., Castellano, S., Xue, Y., Hvilsom, C., & Marques-Bonet, T. (2016). Chimpanzee genomic diversity reveals ancient admixture with bonobos. Science,354(6311), 477-481. DOI BibTeX Endnote | |
| Engelken, J., Espadas, G., Mancuso, F. M., Bonet, N., Scherr, A.-L., Jímenez-Álvarez, V., Codina-Solà, M., Medina-Stacey, D., Spataro, N., Stoneking, M., Calafell, F., Sabidó, E., & Bosch, E. (2016). Signatures of evolutionary adaptation in quantitative trait loci influencing trace element homeostasis in liver. Molecular Biology and Evolution,33(3), 738-754. Open Access DOI BibTeX Endnote | |
| Fournier-Level, A., Neumann-Mondlak, A., Good, R., Green, L., Schmidt, J. M., & Robin, C. (2016). Behavioural response to combined insecticide and temperature stress in natural populations of Drosophila melanogaster. Journal of Evolutionary Biology,29(5), 1030-1044. DOI BibTeX Endnote | |
| Fu, Q., Posth, C., Hajdinjak, M., Petr, M., Mallick, S., Fernandes, D., Furtwängler, A., Haak, W., Meyer, M., Mittnik, A., Nickel, B., Peltzer, A., Rohland, N., Slon, V., Talamo, S., Lazaridis, I., Lipson, M., Mathieson, I., Schiffels, S., Skoglund, P., Derevianko, A. P., Drozdov, N., Slavinsky, V., Tsybankov, A., Cremonesi, R. G., Mallegni, F., Gély, B., Vacca, E., Morales, M. R. G., Straus, L. G., Neugebauer-Maresch, C., Teschler-Nicola, M., Constantin, S., Moldovan, O. T., Benazzi, S., Peresani, M., Coppola, D., Lari, M., Ricci, S., Ronchitelli, A., Valentin, F., Thevenet, C., Wehrberger, K., Grigorescu, D., Rougier, H., Crevecoeur, I., Flas, D., Semal, P., Mannino, M. A., Cupillard, C., Bocherens, H., Conard, N. J., Harvati, K., Moiseyev, V., Drucker, D. G., Svoboda, J., Richards, M. P., Caramelli, D., Pinhasi, R., Kelso, J., Patterson, N., Krause, J., Pääbo, S., & Reich, D. (2016). The genetic history of Ice Age Europe. Nature,534(7606), 200-205. DOI BibTeX Endnote | |
| Gladyshev, V. N., Arnér, E. S., Berry, M. J., Brigelius-Flohé, R., Bruford, E. A., Burk, R. F., Carlson, B. A., Castellano, S., Chavatte, L., Conrad, M., Copeland, P. R., Diamond, A. M., Driscoll, D. M., Ferreiro, A., Flohé, L., Green, F. R., Guigó, R., Handy, D. E., Hatfield, D. L., Hesketh, J., Holmgren, A., Hoffmann, P. R., Hondal, R. J., Howard, M. T., Huang, K., Kim, H.-Y., Köhrle, J., Kim, I. Y., Krol, A., Kryukov, G. V., Lee, B. J., Lee, B. C., Lei, X. G., Liu, Q., Lescure, A., Lobanov, A. V., Loscalzo, J., Maiorino, M., Mariotti, M., Prabhu, K. S., Rayman, M. P., Rozovsky, S., Salinas, G., Schmidt, E. E., Schomburg, L., Schweizer, U., Simonovic, M., Sunde, R. A., Tsuji, P. A., Tweedie, S., Ursini, F., Whanger, P. D., & Zhang, Y. (2016). Selenoprotein Gene Nomenclature. The Journal of Biological Chemistry,291(46), 24036-24040. DOI BibTeX Endnote | |
| Gokce, O., Stanley, G. M., Treutlein, B., Neff, N. F., Camp, J. G., Malenka, R. C., Rothwell, P. E., Fuccillo, M. V., Südhof, T. C., & Quake, S. R. (2016). Cellular taxonomy of the mouse striatum as revealed by single-cell RNA-seq. Cell Reports,16(4), 1126-1137. Open Access DOI BibTeX Endnote | |
| Grote, S., Prüfer, K., Kelso, J., & Dannemann, M. (2016). ABAEnrichment: An R package to test for gene set expression enrichment in the adult and developing human brain. Bioinformatics,32(20), 3201-3203. Open Access DOI BibTeX Endnote | |
| Key, F. M. (2016). Human adaptation in the light of ancient and modern genomes. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Key, F. M., Fu, Q., Romagné, F., Lachmann, M., & Andrés, A. M. (2016). Human adaptation and population differentiation in the light of ancient genomes. Nature Communications,7: 10775. Open Access DOI BibTeX Endnote | |
| Kozhemyakina, R. V., Shikhevich, S. G., Cagan, A., & Gulevich, R. G. (2016). Vlijanie odnokratnogo vvedenija etanola na poredenie, ego potredlenie i predpochtenie u krys, selekcioniruemych ne ruchnoe i agressivnoe povedenie po otnoshenija k cheloveku = Effect of single ethanol administration on behavior and the consumption and preference of ethanol in tame and aggressive rats. Vavilovskij Žurnal Genetiki i Selekcii = Vavilov Journal of Genetics and Breeding,20(2), 165-171. Open Access DOI BibTeX Endnote | |
| Krause, J., & Pääbo, S. (2016). Genetic time travel. Genetics,203(1), 9-12. DOI BibTeX Endnote | |
| Kuhlwilm, M., Gronau, I., Hubisz, M. J., de Filippo, C., Prado-Martinez, J., Kircher, M., Fu, Q., Burbano, H. A., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Marques-Bonet, T., Andrés, A. M., Viola, B., Pääbo, S., Meyer, M., Siepel, A., & Castellano, S. (2016). Ancient gene flow from early modern humans into Eastern Neanderthals. Nature,530(7591), 429-433. DOI BibTeX Endnote | |
| Lazaridis, I., Nadel, D., Rollefson, G., Merrett, D. C., Rohland, N., Mallick, S., Fernandes, D., Novak, M., Gamarra, B., Sirak, K., Connell, S., Stewardson, K., Harney, E., Fu, Q., Gonzalez-Fortes, G., Jones, E. R., Roodenberg, S. A., Lengyel, G., Bocquentin, F., Gasparian, B., Monge, J. M., Gregg, M., Eshed, V., Mizrahi, A.-S., Meiklejohn, C., Gerritsen, F., Bejenaru, L., Blüher, M., Campbell, A., Cavalleri, G., Comas, D., Froguel, P., Gilbert, E., Kerr, S. M., Kovacs, P., Krause, J., McGettigan, D., Merrigan, M., Merriwether, D. A., O'Reilly, S., Richards, M. B., Semino, O., Shamoon-Pour, M., Stefanescu, G., Stumvoll, M., Tönjes, A., Torroni, A., Wilson, J. F., Yengo, L., Hovhannisyan, N. A., Patterson, N., Pinhasi, R., & Reich, D. (2016). Genomic insights into the origin of farming in the ancient Near East. Nature,536(7617), 419-424. DOI BibTeX Endnote | |
| Le Duc, D., & Schöneberg, T. (2016). Adaptation to nocturnality – learning from avian genomes. BioEssays,38(7), 694-703. DOI BibTeX Endnote | |
| Lee, C.-P., Chiang, S.-L., Ko, A.-M.-S., Liu, Y.-F., Ma, C., Lu, C.-Y., Huang, C.-M., Chang, J.-G., Kuo, T.-M., Chen, C.-L., Tsai, E.-M., & Ko, Y.-C. (2016). ALPK1 phosphorylates myosin IIA modulating TNF-alpha trafficking in gout flares. Scientific Reports,6: 25740. Open Access DOI BibTeX Endnote | |
| Li, M., Rothwell, R., Vermaat, M., Wachsmuth, M., Schröder, R., Laros, J. F., Oven, M. v., Bakker, P. I. d., Bovenberg, J. A., Duijn, C. M. v., Ommen, G.-J.-B.-v., Slagboom, P. E., Swertz, M. A., Wijmenga, C., Genome of the Netherlands Consortium, Kayser, M., Boomsma, D. I., Zöllner, S., Knijff, P. d., & Stoneking, M. (2016). Transmission of human mtDNA heteroplasmy in the Genome of the Netherlands families: Support for a variable-size bottleneck. Genome Research,26(4), 417-426. DOI BibTeX Endnote | |
| Li, Q., Guo, S., Jiang, X., Bryk, J., Naumann, R., Enard, W., Tomita, M., Sugimoto, M., Khaitovich, P., & Pääbo, S. (2016). Mice carrying a human GLUD2 gene recapitulate aspects of human transcriptome and metabolome development. Proceedings of the National Academy of Sciences of the United States of America,113(19), 5358-5363. DOI BibTeX Endnote | |
| Liu, X., Han, D., Somel, M., Jiang, X., Hu, H., Guijarro, P., Zhang, N., Mitchell, A., Halene, T., Ely, J. J., Sherwood, C. C., Hof, P. R., Qiu, Z., Pääbo, S., Akbarian, S., & Khaitovich, P. (2016). Disruption of an evolutionarily novel synaptic expression pattern in autism. PLoS Biology,14(9): e1002558. Open Access DOI BibTeX Endnote | |
| Liu, Y.-F., Chiang, S.-L., Lin, C.-Y., Chang, J.-G., Chung, C.-M., Ko, A.-M.-S., Lin, Y.-Z., Lee, C.-H., Lee, K.-W., Chen, M.-K., Hua, C.-H., Tsai, M.-H., Chen, Y.-C., & Ko, Y.-C. (2016). Somatic mutations and genetic variants of NOTCH1 in head and neck squamous cell carcinoma occurrence and development. Scientific Reports,6: 24014. Open Access DOI BibTeX Endnote | |
| Lobon, I., Tucci, S., de Manuel, M., Ghirotto, S., Benazzo, A., Prado-Martinez, J., Lorente-Galdos, B., Nam, K., Dabad, M., Hernandez-Rodriguez, J., Comas, D., Navarro, A., Schierup, M. H., Andrés, A. M., Barbujani, G., Hvilsom, C., & Marques-Bonet, T. (2016). Demographic history of the genus Pan inferred from whole mitochondrial genome reconstructions. Genome Biology and Evolution,8(10), 2020-2030. Open Access DOI BibTeX Endnote | |
| Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F.-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature,538(7624), 207-214. DOI BibTeX Endnote | |
| Mallick, S., Li, H., Lipson, M., Mathieson, I., Gymrek, M., Racimo, F., Zhao, M., Chennagiri, N., Nordenfelt, S., Tandon, A., Skoglund, P., Lazaridis, I., Sankararaman, S., Fu, Q., Rohland, N., Renaud, G., Erlich, Y., Willems, T., Gallo, C., Spence, J. P., Song, Y. S., Poletti, G., Balloux, F., van Driem, G., de Knijff, P., Romero, I. G., Jha, A. R., Behar, D. M., Bravi, C. M., Capelli, C., Hervig, T., Moreno-Estrada, A., Posukh, O. L., Balanovska, E., Balanovsky, O., Karachanak-Yankova, S., Sahakyan, H., Toncheva, D., Yepiskoposyan, L., Tyler-Smith, C., Xue, Y., Abdullah, M. S., Ruiz-Linares, A., Beall, C. M., Rienzo, A. D., Jeong, C., Starikovskaya, E. B., Metspalu, E., Parik, J., Villems, R., Henn, B. M., Hodoglugil, U., Mahley, R., Sajantila, A., Stamatoyannopoulos, G., Wee, J. T. S., Khusainova, R., Khusnutdinova, E., Litvinov, S., Ayodo, G., Comas, D., Hammer, M. F., Kivisild, T., Klitz, W., Winkler, C. A., Labuda, D., Bamshad, M., Jorde, L. B., Tishkoff, S. A., Watkins, W. S., Metspalu, M., Dryomov, S., Sukernik, R., Singh, L., Thangaraj, K., Pääbo, S., Kelso, J., Patterson, N., & Reich, D. (2016). The Simons Genome Diversity Project: 300 genomes from 142 diverse populations. Nature,538(7624), 201-206. DOI BibTeX Endnote | |
| Mendez, F. L., Poznik, G. D., Castellano, S., & Bustamante, C. D. (2016). The divergence of Neandertal and modern human Y chromosomes. The American Journal of Human Genetics,98(4), 728-734. Open Access DOI BibTeX Endnote | |
| Meyer, M., Arsuaga, J.-L., de Filippo, C., Nagel, S., Aximu-Petri, A., Nickel, B., Martínez, I., Gracia, A., Bermúdez de Castro, J. M., Carbonell, E., Viola, B., Kelso, J., Prüfer, K., & Pääbo, S. (2016). Nuclear DNA sequences from the Middle Pleistocene Sima de los Huesos hominins. Nature,531(7595), 504-507. DOI BibTeX Endnote | |
| Mora-Bermúdez, F., Badsha, F., Kanton, S., Camp, J. G., Vernot, B., Köhler, K., Voigt, B., Okita, K., Maricic, T., He, Z., Lachmann, R., Pääbo, S., Treutlein, B., & Huttner, W. B. (2016). Differences and similarities between human and chimpanzee neural progenitors during cerebral cortex development. eLife, e18683. Open Access DOI BibTeX Endnote | |
| Ni, S., & Stoneking, M. (2016). Improvement in detection of minor alleles in next generation sequencing by base quality recalibration. BMC Genomics,17: 139. Open Access DOI BibTeX Endnote | |
| Posth, C., Renaud, G., Mittnik, A., Drucker, D. G., Rougier, H., Cupillard, C., Valentin, F., Thevenet, C., Furtwängler, A., Wißing, C., Francken, M., Malina, M., Bolus, M., Lari, M., Gigli, E., Capecchi, G., Crevecoeur, I., Beauval, C., Flas, D., Germonpré, M., van der Plicht, J., Cottiaux, R., Gély, B., Ronchitelli, A., Wehrberger, K., Grigorescu, D., Svoboda, J., Semal, P., Caramelli, D., Bocherens, H., Harvati, K., Conard, N. J., Haak, W., Powell, A., & Krause, J. (2016). Pleistocene mitochondrial genomes suggest a single major dispersal of non-Africans and a late glacial population turnover in Europe. Current Biology,26(6), 827-833. DOI BibTeX Endnote | |
| Prasad, R. B., Lessmark, A., Almgren, P., Kovacs, G., Hansson, O., Oskolkov, N., Vitai, M., Ladenvall, C., Kovacs, P., Fadista, J., Lachmann, M., Zhou, Y., Sonestedt, E., Poon, W., Wollheim, C. B., Orho-Melander, M., Stumvoll, M., Tuomi, T., Pääbo, S., Koranyi, L., & Groop, L. (2016). Excess maternal transmission of variants in the THADA gene to offspring with type 2 diabetes. Diabetologia,59(8), 1702-1713. DOI BibTeX Endnote | |
| Pugach, I., Matveev, R., Spitsyn, V., Makarov, S., Novgorodov, I., Osakovsky, V., Stoneking, M., & Pakendorf, B. (2016). The complex admixture history and recent southern origins of Siberian populations. Molecular Biology and Evolution,33(7), 1777-1795. Open Access DOI BibTeX Endnote | |
| Quach, H., Rotival, M., Pothlichet, J., Loh, Y.-H.-E., Dannemann, M., Zidane, N., Laval, G., Patin, E., Harmant, C., Lopez, M., Deschamps, M., Naffakh, N., Duffy, D., Coen, A., Leroux-Roels, G., Clément, F., Boland, A., Deleuze, J.-F., Kelso, J., Albert, M. L., & Quintana-Murci, L. (2016). Genetic adaptation and neandertal admixture shaped the immune system of human populations. Cell,167(3), 643-656. Open Access DOI BibTeX Endnote | |
| Racimo, F., Renaud, G., & Slatkin, M. (2016). Joint Estimation of Contamination, Error and Demography for Nuclear DNA from Ancient Humans. PLoS Genetics,12(4): e1005972. Open Access DOI BibTeX Endnote | |
| Renaud, G. (2016). Bayesian maximum a posteriori algorithms for modern and ancient DNA. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., Fu, Q., Harney, E., Lipson, M., Mallick, S., Novak, M., Rohland, N., Stewardson, K., Abdullah, S., Cox, M. P., Friedlaender, F. R., Friedlaender, J. S., Kivisild, T., Koki, G., Kusuma, P., Merriwether, D. A., Ricaut, F.-X., Wee, J. T. S., Patterson, N., Krause, J., Pinhasi, R., & Reich, D. (2016). Genomic insights into the peopling of the Southwest Pacific. Nature,538(7626), 510-513. DOI BibTeX Endnote | |
| Slon, V., Glocke, I., Barkai, R., Gopher, A., Hershkovitz, I., & Meyer, M. (2016). Mammalian mitochondrial capture, a tool for rapid screening of DNA preservation in faunal and undiagnostic remains, and its application to Middle Pleistocene specimens from Qesem Cave (Israel). Quaternary International,398, 210-218. DOI BibTeX Endnote | |
| Stiller, M., Sucker, A., Griewank, K., Aust, D., Baretton, G. B., Schadendorf, D., & Horn, S. (2016). Single-strand DNA library preparation improves sequencing of formalin-fixed and paraffin-embedded (FFPE) cancer DNA. Oncotarget,7(37), 59115-59128. Open Access DOI BibTeX Endnote | |
| Stoneking, M. (2016). Archaic genomes and the peopling of South Asia. In G. R. Schug, & S. R. Walimbe ( DOI BibTeX Endnote | |
| Stoneking, M. (2016). The contribution of genetic ancestry from archaic humans to modern humans. In M. Tibayrenc, & F. J. Ayala ( BibTeX Endnote | |
| Suh, A., Witt, C. C., Menger, J., Sadanandan, K. R., Podsiadlowski, L., Gerth, M., Weigert, A., McGuire, J. A., Mudge, J., Edwards, S. V., & Rheindt, F. E. (2016). Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes. Nature Communications,7: 11396. Open Access DOI BibTeX Endnote | |
| Talamo, S., Hajdinjak, M., Mannino, M. A., Fasani, L., Welker, F., Martini, F., Romagnoli, F., Zorzin, R., Meyer, M., & Hublin, J.-J. (2016). Direct radiocarbon dating and genetic analyses on the purported Neanderthal mandible from the Monti Lessini (Italy). Scientific Reports,6: 29144. Open Access DOI BibTeX Endnote | |
| Teixeira, J. C. (2016). Long-term balancing selection in the genomes of humans and other great apes. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Treutlein, B., Lee, Q. Y., Camp, J. G., Mall, M., Koh, W., Shariati, S. A. M., Sim, S., Neff, N. F., Skotheim, J. M., Wernig, M., & Quake, S. R. (2016). Dissecting direct reprogramming from fibroblast to neuron using single-cell RNA-seq. Nature,534(7607), 391-395. DOI BibTeX Endnote | |
| Tu, H.-P., Chung, C.-M., Ko, A.-M.-S., Lee, S.-S., Lai, H.-M., Lee, C.-H., Huang, C.-M., Liu, C.-S., & Ko, Y.-C. (2016). Additive composite ABCG2, SLC2A9 and SLC22A12 scores of high-risk alleles with alcohol use modulate gout risk. Journal of Human Genetics,61(9), 803-810. DOI BibTeX Endnote | |
| Vernot, B., Tucci, S., Kelso, J., Schraiber, J., Wolf, A., Gittelman, R., Dannemann, M., Grote, S., McCoy, R., Norton, H., Scheinfeldt, L., Merriwether, D., Koki, G., Friedlaender, J., Wakefield, J., Pääbo, S., & Akey, J. (2016). Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals. Science,352(6282), 235-239. DOI BibTeX Endnote | |
| Voiculescu, S. E., Le Duc, D., Rosca, A. E., Zeca, V., Chitimus, D. M., Arsene, A. L., Dragoi, C. M., Crenguta Nicolae, A., Zagrean, L., Schöneberg, T., & Zagrean, A.-M. (2016). Behavioral and molecular effects of prenatal continuous light exposure in the adult rat. Brain Research,1650, 51-59. DOI BibTeX Endnote | |
| Wachsmuth, M., Hübner, A., Li, M., Madea, B., & Stoneking, M. (2016). Age-Related and Heteroplasmy-Related Variation in Human mtDNA Copy Number. PLoS Genetics,12(3): e1005939. Open Access DOI BibTeX Endnote | |
| Weigert, A., Golombek, A., Gerth, M., Schwarz, F., Struck, T. H., & Bleidorn, C. (2016). Evolution of mitochondrial gene order in Annelida. Molecular Phylogenetics and Evolution,94(Part A), 196-206. DOI BibTeX Endnote | |
| Welker, F., Hajdinjak, M., Talamo, S., Jaouen, K., Dannemann, M., David, F., Julien, M., Meyer, M., Kelso, J., Barnes, I., Braces, S., Kamminga, P., Fischer, R., Kessler, B., Stewart, J. R., Pääbo, S., Collins, M. J., & Hublin, J.-J. (2016). Palaeoproteomic evidence identifies archaic hominins associated with the Châtelperronian at the Grotte du Renne. Proceedings of the National Academy of Sciences of the United States of America,113(44), 11162-11167. DOI BibTeX Endnote | |
| Weyer, S., & Pääbo, S. (2016). Functional analyses of transcription factor binding sites that differ between present-day and archaic humans. Molecular Biology and Evolution,33(2), 316-322. Open Access DOI BibTeX Endnote | |
| White, L., & Castellano, S. (2016). The role of selenium in human evolution. In D. Hatfield, & V. Gladyshev ( DOI BibTeX Endnote | |
| Whitten, C. M. (2016). A novel approach for elucidating the complex maternal prehistories of Siberian ethnolinguistic groups using complete mitochondrial genomes. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Zhang, B., Han, D., Korostelev, Y., Yan, Z., Shao, N., Khrameeva, E., Velichkovsky, B. M., Chen, Y.-P.-P., Gelfand, M. S., & Khaitovich, P. (2016). Changes in snoRNA and snRNA abundance in the human, chimpanzee, macaque, and mouse brain. Genome Biology and Evolution,8(3), 840-850. Open Access DOI BibTeX Endnote |
2015
| Aguado, M. T., Glasby, C. J., Schroeder, P. C., Weigert, A., & Bleidorn, C. (2015). The making of a branching annelid: An analysis of complete mitochondrial genome and ribosomal data of Ramisyllis multicaudata. Scientific Reports,5: 12072. Open Access DOI BibTeX Endnote | |
| Alter, S. E., Meyer, M., Post, K., Czechowski, P., Gravlund, P., Gaines, C., Rosenbaum, H. C., Kaschner, K., Turvey, S. T., van der Plicht, J., Shapiro, B., & Hofreiter, M. (2015). Climate impacts on transocean dispersal and habitat in gray whales from the Pleistocene to 2100. Molecular Ecology,24(7), 1510-1522. DOI BibTeX Endnote | |
| Benazzi, S., Slon, V., Talamo, S., Negrino, F., Peresani, M., Bailey, S. E., Sawyer, S., Panetta, D., Vicino, G., Starnini, E., Mannino, M. A., Salvadori, P. A., Meyer, M., Pääbo, S., & Hublin, J.-J. (2015). The makers of the Protoaurignacian and implications for Neandertal extinction. Science,348(6236), 793-796. DOI BibTeX Endnote | |
| Bozek, K., Wei, Y., Yan, Z., Liu, X., Xiong, J., Sugimoto, M., Tomita, M., Pääbo, S., Sherwood, C. C., Hof, P. R., Ely, J. J., Li, Y., Steinhauser, D., Willmitzer, L., Giavalisco, P., & Khaitovich, P. (2015). Organization and evolution of brain lipidome revealed by large-scale analysis of human, chimpanzee, macaque, and mouse tissues. Neuron,85(4), 695-702. DOI BibTeX Endnote | |
| Cahill, J. A., Stirling, I., Kistler, L., Salamzade, R., Ersmark, E., Fulton, T. L., Stiller, M., Green, R. E., & Shapiro, B. (2015). Genomic evidence of geographically widespread effect of gene flow from polar bears into brown bears. Molecular Ecology,24(6), 1205-1217. Open Access DOI BibTeX Endnote | |
| Camp, J. G., Badsha, F., Florio, M., Kanton, S., Gerber, T., Wilsch-Bräuninger, M., Lewitus, E., Sykes, A., Hevers, W., Lancaster, M., Knoblich, J. A., Lachmann, R., Pääbo, S., Huttner, W. B., & Treutlein, B. (2015). Human cerebral organoids recapitulate gene expression programs of fetal neocortex development. Proceedings of the National Academy of Sciences of the United States of America,112(51), 15672-15677. DOI BibTeX Endnote | |
| Cao, Q., Didelot, X., Wu, Z., Li, Z., He, L., Li, Y., Ni, M., You, Y., Lin, X., Li, Z., Gong, Y., Zheng, M., Zhang, M., Liu, J., Wang, W., Bo, X., Falush, D., Wang, S., & Zhang, J. (2015). Progressive genomic convergence of two Helicobacter pylori strains during mixed infection of a patient with chronic gastritis. Gut,64(4), 554-561. Open Access DOI BibTeX Endnote | |
| de Boer, M., Tzur, S., van Leeuwen, K., Dencher, P. C., Skorecki, K., Wolach, B., Gavrieli, R., Nasidze, I., Stoneking, M., Tanck, M. W., & Roos, D. (2015). A founder effect for p47phoxTrp193Ter chronic granulomatous disease in Kavkazi Jews. Blood Cells, Molecules, and Diseases,55(4), 320-327. DOI BibTeX Endnote | |
| Fanti, S. D., Barbieri, C., Sarno, S., Sevini, F., Vianello, D., Tamm, E., Metspalu, E., van Oven, M., Hübner, A., Sazzini, M., Franceschi, C., Pettener, D., & Luiselli, D. (2015). Fine dissection of human mitochondrial DNA haplogroup HV lineages reveals paleolithic signatures from European glacial refugia. PLoS One,10(12): e0144391. Open Access DOI BibTeX Endnote | |
| Florio, M., Albert, M., Taverna, E., Namba, T., Brandl, H., Lewitus, E., Haffner, C., Sykes, A., Wong, F. K., Peters, J., Guhr, E., Klemroth, S., Prüfer, K., Kelso, J., Naumann, R., Nüsslein, I., Dahl, A., Lachmann, R., Pääbo, S., & Huttner, W. B. (2015). Human-specific gene ARHGAP11B promotes basal progenitor amplification and neocortex expansion. Science,347(6229), 1465-1470. DOI BibTeX Endnote | |
| Frantz, L. A., Schraiber, J. G., Madsen, O., Megens, H.-J., Cagan, A., Bosse, M., Paudel, Y., Crooijmans, R. P., Groenen, G. L., & Groenen, M. A. (2015). Evidence of long-term gene flow and selection during domestication from analyses of Eurasian wild and domestic pig genomes. Nature Genetics,47(10), 1141-1148. DOI BibTeX Endnote | |
| Fu, Q., Hajdinjak, M., Moldovan, O., Constantin, S., Mallick, S., Skoglund, P., Patterson, N., Rohland, N., Lazaridis, I., Nickel, B., Viola, B., Prüfer, K., Meyer, M., Kelso, J., Reich, D., & Pääbo, S. (2015). An early modern human from Romania with a recent Neanderthal ancestor. Nature,524(7564), 216-219. DOI BibTeX Endnote | |
| Germonpré, M., Sablin, M. V., Láznicková-Galetová, M., Després, V., Stevens, R. E., Stiller, M., & Hofreiter, M. (2015). Palaeolithic dogs and Pleistocene wolves revisited: A reply to Morey (2014). Journal of Archaeological Science,54, 210-216. DOI BibTeX Endnote | |
| Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., Fu, Q., Mittnik, A., Bánffy, E., Economou, C., Francken, M., Friederich, S., Pena, R. G., Hallgren, F., Khartanovich, V., Khokhlov, A., Kunst, M., Kuznetsov, P., Meller, H., Mochalov, O., Moiseyev, V., Nicklisch, N., Pichler, S. L., Risch, R., Guerra, M. A. R., Roth, C., Szécsényi-Nagy, A., Wahl, J., Meyer, M., Krause, J., Brown, D., Anthony, D., Cooper, A., Alt, K. W., & Reich, D. (2015). Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, (522), 207-211. DOI BibTeX Endnote | |
| Hammerschmidt, K., Schreiweis, C., Minge, C., Pääbo, S., Fischer, J., & Enard, W. (2015). A humanized version of Foxp2 does not affect ultrasonic vocalization in adult mice. Genes, Brain and Behavior,14(8), 583-590. Open Access DOI BibTeX Endnote | |
| Heyne, H. (2015). Genetic influences on brain gene expression in rats selected for tameness and aggression. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Hopfe, C. (2015). Untersuchung der Eignung verschiedener archäologischer Materialien für die Gewinnung von alter DNA. Master Thesis, Universität, Leipzig. BibTeX Endnote | |
| Hughes, D. A., Kircher, M., He, Z., Guo, S., Fairbrother, G. L., Moreno, C. S., Khaitovich, P., & Stoneking, M. (2015). Evaluating intra- and inter-individual variation in the human placental transcriptome. Genome Biology,16: 54. Open Access DOI BibTeX Endnote | |
| Korlevic, P., Gerber, T., Gansauge, M.-T., Hajdinjak, M., Nagel, S., Ayinuer-Petri, A., & Meyer, M. (2015). Reducing microbial and human contamination in DNA extractions from ancient bones and teeth. Biotechniques,59(2), 87-93. Open Access DOI BibTeX Endnote | |
| Kuhlwilm, M. (2015). Population history of Neandertals and functional analysis of human-specific changes. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Le Duc, D. (2015). De novo genome assembly of the kiwi (apteryx mantelli) provides insight into nocturnal adaptation. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Le Duc, D., Renaud, G., Krishnan, A., Almén, M. S., Huynen, L., Prohaska, S. J., Ongyerth, M., Bitarello, B. D., Schiöth, H. B., Hofreiter, M., Stadler, P. F., Prüfer, K., Lambert, D., Kelso, J., & Schöneberg, T. (2015). Kiwi genome provides insights into evolution of a nocturnal lifestyle. Genome Biology,16: 147. Open Access DOI BibTeX Endnote | |
| Li, M., Schröder, R., Ni, S., Madea, B., & Stoneking, M. (2015). Extensive tissue-related and allele-related mtDNA heteroplasmy suggests positive selection for somatic mutations. Proceedings of the National Academy of Sciences of the United States of America,112(8), 2491-2496. DOI BibTeX Endnote | |
| Macholdt, E., Slatkin, M., Pakendorf, B., & Stoneking, M. (2015). New insights into the history of the C-14010 lactase persistence variant in Eastern and Southern Africa. American Journal of Physical Anthropology,156(4), 661-664. DOI BibTeX Endnote | |
| Mafessoni, F. (2015). Limits in selection, from populations to cognition. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Mafessoni, F., & Lachmann, M. (2015). Selective strolls: Fixation and extinction in diploids are slower for weakly selected mutations than for neutral ones. Genetics,201(4), 1581-1589. DOI BibTeX Endnote | |
| Nogueiro, I., Teixeira, J. C., Amorim, A., Gusmão, L., & Alvarez, L. (2015). Portuguese crypto-Jews: The genetic heritage of a complex history. Frontiers in Genetics,6: 12. Open Access DOI BibTeX Endnote | |
| Nogueiro, I., Teixeira, J. C., Amorim, A., Gusmão, L., & Alvarez, L. (2015). Reply to letter from Felice L. Bedford and Doron Yacobi. European journal of human genetics,23(8), 994-995. DOI BibTeX Endnote | |
| Nogueiro, I., Teixeira, J., Amorim, A., Gusmão, L., & Alvarez, L. (2015). Echoes from Sepharad: Signatures on the maternal gene pool of crypto-Jewish descendants. European Journal of Human Genetics,23, 693-699. DOI BibTeX Endnote | |
| Pääbo, S. (2015). Dorcas Cummings Lecture: The Genetic Legacy of Neanderthals. In T. Grodzicker, D. Stewart, & B. Stillman ( DOI BibTeX Endnote | |
| Pääbo, S. (2015). Genomy drevnich gominin iz Sibiri = Genomes of ancient hominins from Siberia. In Vestnik Rossijskoj Akademii Nauk 85 (10): Doklady Laureatov Bol'shoj Zolotoj Medali imeni M. V. Lomonosova Rossijskoj Akademii Nauk 2014 goda (pp. 879-884). Moscow: Nauka. DOI BibTeX Endnote | |
| Pääbo, S. (2015). The contribution of ancient hominin genomes from Siberia to our understanding of human evolution. In Herald of the Russian Academy of Sciences 85 (5): Papers by Laureates of the 2014 Lomonosov Grand Gold Medal of the Russian Academy of Sciences (pp. 392-396). Moscow: IAPC «Nauka/Interperiodica». DOI BibTeX Endnote | |
| Pääbo, S. (2015). The diverse origins of the human gene pool (Commentary). Nature Reviews Genetics,16, 313-314. DOI BibTeX Endnote | |
| Palamara, P. F., Francioli, L. C., Wilton, P. R., Genovese, G., Gusev, A., Finucane, H. K., Sankararaman, S., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Sunyaev, S. R., de Bakker, P. I., Wakeley, J., Pe’er, I., & Price, A. L. (2015). Leveraging distant relatedness to quantify human mutation and gene-conversion rates. The American Journal of Human Genetics,97(6), 775-789. DOI BibTeX Endnote | |
| Prüfer, K., & Meyer, M. (2015). Comment on “Late Pleistocene human skeleton and mtDNA link Paleoamericans and modern Native Americans”. Science,347(6224), 835-835. DOI BibTeX Endnote | |
| Pugach, I., & Stoneking, M. (2015). Genome-wide insights into the genetic history of human populations. Investigative Genetics,6: 6. Open Access DOI BibTeX Endnote | |
| Qin, P., & Stoneking, M. (2015). Denisovan Ancestry in East Eurasian and Native American Populations. Molecular Biology and Evolution,32(10), 2665-2674. DOI BibTeX Endnote | |
| Renaud, G., Slon, V., Duggan, A. T., & Kelso, J. (2015). Schmutzi: Estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA. Genome Biology,16: 224. Open Access DOI BibTeX Endnote | |
| Renaud, G., Stenzel, U., Maricic, T., Wiebe, V., & Kelso, J. (2015). deML: Robust demultiplexing of Illumina sequences using a likelihood-based approach. Bioinformatics,31(5), 770-772. Open Access DOI BibTeX Endnote | |
| Ronke, C., Dannemann, M., Halbwax, M., Fischer, A., Helmschrodt, C., Brügel, M., André, C., Atencia, R., Mugisha, L., Scholz, M., Ceglarek, U., Thiery, J., Pääbo, S., Prüfer, K., & Kelso, J. (2015). Lineage-specific changes in biomarkers in great apes and humans. PLoS One,10(8): e0134548. Open Access DOI BibTeX Endnote | |
| Savage, P. E., Matsumae, H., Oota, H., Stoneking, M., Currie, T. E., Tajima, A., Gillan, M., & Brown, S. (2015). How 'circumpolar' is Ainu music? Musical and genetic perspectives on the history of the Japanese archipelago. Ethnomusicology Forum,24(3), 443-467. DOI BibTeX Endnote | |
| Sawyer, S. (2015). Insights into Neandertals and Denisovans from Denisova cave. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Sawyer, S., Renaud, G., Viola, B., Hublin, J.-J., Gansauge, M.-T., Shunkov, M. V., Derevianko, A. P., Prüfer, K., Kelso, J., & Pääbo, S. (2015). Nuclear and mitochondrial DNA sequences from two Denisovan individuals. Proceedings of the National Academy of Sciences of the United States of America,112(51), 15696-15700. Open Access DOI BibTeX Endnote | |
| Strehlow, V., Heyne, H. O., & Lemke, J. R. (2015). The spectrum of GRIN2A-associated disorders. Epileptologie,32(3), 147-151. BibTeX Endnote | |
| Struck, T. H., Golombek, A., Weigert, A., Franke, F. A., Westheide, W., Purschke, G., Bleidorn, C., & Halanych, K. M. (2015). The evolution of annelids reveals two adaptive routes to the interstitial realm. Current Biology,25(15), 1993-1999. DOI BibTeX Endnote | |
| Teixeira, J. C., de Filippo, C., Weihmann, A., Meneu, J. R., Racimo, F., Dannemann, M., Nickel, B., Fischer, A., Halbwax, M., Andre, C., Atencia, R., Meyer, M., Parra, G., Pääbo, S., & Andrés, A. M. (2015). Long-term balancing selection in LAD1 maintains a missense trans-species polymorphism in humans, chimpanzees and bonobos. Molecular Biology and Evolution,32(5), 1186-1196. DOI BibTeX Endnote | |
| Valverde, G., Zhou, H., Lippold, S., de Filippo, C., Tang, K., Herráez, D. L., Li, J., & Stoneking, M. (2015). A novel candidate region for genetic adaptation to high altitude in Andean populations. PLoS One,10(5): e0125444. Open Access DOI BibTeX Endnote | |
| van Leeuwen, E. M., Kanterakis, A., Deelen, P., Kattenberg, M. V., The Genome the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Slagboom, P. E., de Bakker, P. I., Wijmenga, C., Swertz, M. A., Boomsma, D. I., van Duijn, C. M., Karrsen, L. C., & Hottenga, J. J. (2015). Population-specific genotype imputations using minimac or IMPUTE2. Nature Protocols,10(9), 1285-1296. DOI BibTeX Endnote | |
| van Leeuwen, E. M., Karssen, L. C., Deelen, J., Isaacs, A., Medina-Gomez, C., Mbarek, H., Kanterakis, A., Trompet, S., Postmus, I., Verweij, N., van Enckevort, D. J., Huffman, J. E., White, C. C., Feitosa, M. F., Bartz, T. M., Manichaikul, A., Joshi, P. K., Peloso, G. M., Deelen, P., van Dijk, F., Willemsen, G., de Geus, E. J., Milaneschi, Y., Penninx, B. W., Francioli, L. C., Menelaou, A., Pulit, S. L., Rivadeneira, F., Hofman, A., Oostra, B. A., Franco, O. H., Leach, I. M., Beekman, M., de Craen, A. J., Uh, H.-W., Trochet, H., Hocking, L. J., Porteous, D. J., Sattar, N., Packard, C. J., Buckley, B. M., Brody, J. A., Bis, J. C., Rotter, J. I., Mychaleckyj, J. C., Campbell, H., Duan, Q., Lange, L. A., Wilson, J. F., Hayward, C., Polasek, O., Vitart, V., Rudan, I., Wright, A. F., Rich, S. S., Psaty, B. M., Borecki, I. B., Kearney, P. M., Stott, D. J., Cupples, L. A., The Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, Jukema, J. W., van der Harst, P., Sijbrands, E. J., Hottenga, J.-J., Uitterlinden, A. G., Swertz, M. A., van Ommen, G.-J.-B., de Bakker, P. I., Slagboom, P. E., Boomsma, D. I., Wijmenga, C., & van Duijn, C. M. (2015). Genome of the Netherlands population - specific imputations identify an ABCA6 variant associated with cholesterol levels. Nature Communications,6: 6065. Open Access DOI BibTeX Endnote | |
| Vaughan, A. E., Brumwell, A. N., Xi, Y., Gotts, J. E., Brownfield, D. G., Treutlein, B., Tan, K., Tan, V., Liu, F. C., Looney, M. R., Matthay, M. A., Rock, J. R., & Chapman, H. A. (2015). Lineage-negative progenitors mobilize to regenerate lung epithelium after major injury. Nature,517(7536), 621-625. DOI BibTeX Endnote | |
| Wei, Y.-N., Hu, H.-Y., Xie, G.-C., Fu, N., Ning, Z.-B., Zeng, R., & Khaitovich, P. (2015). Transcript and protein expression decoupling reveals RNA binding proteins and miRNAs as potential modulators of human aging. Genome Biology,16: 41. Open Access DOI BibTeX Endnote | |
| Weiß, C. L., Dannemann, M., Prüfer, K., & Burbano, H. A. (2015). Contesting the presence of wheat in the British Isles 8,000 years ago by assessing ancient DNA authenticity from low-coverage data. eLife,4: e10005. Open Access DOI BibTeX Endnote | |
| White, L. (2015). Population genetics of selenium-related genes in humans. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| White, L., Romagné, F., Müller, E., Erlebach, E., Weihmann, A., Parra, G., Andrés, A. M., & Castellano, S. (2015). Genetic adaptation to levels of dietary selenium in recent human history. Molecular Biology and Evolution,32(6), 1507-1518. DOI PubMed BibTeX Endnote |
2014
| Andrés, A. M., & Nowick, K. ( BibTeX Endnote | |
| Andrés, A. M., & Nowick, K. (2014). Editorial overview: Genetics of human evolution: The genetics of human origins. Current Opinion in Genetics & Development,29, v-vii. DOI BibTeX Endnote | |
| Barbieri, C., Güldemann, T., Naumann, C., Gerlach, L., Berthold, F., Nakagawa, H., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2014). Unraveling the complex maternal history of Southern African Khoisan populations. American Journal of Physical Anthropology,153(3), 435-448. DOI BibTeX Endnote | |
| Barbieri, C., Vicente, M., Oliveira, S., Bostoen, K., Rocha, J., Stoneking, M., & Pakendorf, B. (2014). Migration and interaction in a contact zone: mtDNA variation among Bantu-speakers in southern Africa. PLoS One,9(6): e9911. Open Access DOI BibTeX Endnote | |
| Benazzi, S., Peresani, M., Talamo, S., Fu, Q., Mannino, M. A., Richards, M. P., & Hublin, J.-J. (2014). A reassessment of the presumed Neandertal remains from San Bernardino Cave, Italy. Journal of Human Evolution,66(1), 89-94. DOI BibTeX Endnote | |
| Bornschein, U. (2014). Altered synaptic plasticity in mice expressing humanspecific variants of FOXP2. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Bozek, K., Wei, Y., Yan, Z., Liu, X., Xiong, J., Sugimoto, M., Tomita, M., Pääbo, S., Pieszek, R., Sherwood, C. C., Hof, P. R., Ely, J. J., Steinhauser, D., Bangsbo, J., Willmitzer, L., Hansson, O., Call, J., Giavalisco, P., & Khaitovich, P. (2014). Exceptional evolutionary divergence of human muscle and brain metabolomes parallels human cognitive and physical uniqueness. PLoS Biology,12(5): e1001871. Open Access DOI BibTeX Endnote | |
| Brown, S., Savage, P. E., Ko, A.-M.-S., Stoneking, M., Ko, Y.-C., Loo, J.-H., & Trejaut, J. A. (2014). Correlations in the population structure of music, genes and language. Proceedings of the Royal Society of London. Series B: Biological Sciences,281(1774): 20132072. DOI BibTeX Endnote | |
| Carneiro, M., Albert, F. W., Afonso, S., Pereira, R. J., Burbano, H. A., Campos, R., Melo-Ferreira, J., Blanco-Aguiar, J. A., Villafuerte, R., Nachman, M. W., Good, J. M., & Ferrand, N. (2014). The genomic architecture of population divergence between subspecies of the European rabbit. PLoS Genetics,10(8): e1003519. Open Access DOI BibTeX Endnote | |
| Carneiro, M., Rubin, C.-J., Palma, F. D., Albert, F. W., Alföldi, J., Barrio, A. M., Pielberg, G., Rafati, N., Sayyab, S., Turner-Maier, J., Younis, S., Afonso, S., Aken, B., Alves, J. M., Barrell, D., Bolet, G., Boucher, S., Burbano, H. A., Campos, R., Chang, J. L., Duranthon, V., Fontanesi, L., Garreau, H., Heiman, D., Johnson, J., Mage, R. G., Peng, Z., Queney, G., Rogel-Gaillard, C., Ruffier, M., Searle, S., Villafuerte, R., Xiong, A., Young, S., Forsberg-Nilsson, K., Good, J. M., Lander, E. S., Ferrand, N., Lindblad-Toh, K., & Andersson, L. (2014). Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication. Science,345(6200), 1074-1079. DOI BibTeX Endnote | |
| Castellano, S., Parra, G., Sánchez-Quinto, F. A., Racimo, F., Kuhlwilm, M., Kircher, M., Sawyer, S., Fu, Q., Heinze, A., Nickel, B., Dabney, J., Siebauer, M. F., White, L., Burbano, H. A., Renaud, G., Stenzel, U., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Rudan, P., Brajkovic, D., Kucan, Ž., Gušic, I., Shunkov, M. V., Derevianko, A. P., Viola, B., Meyer, M., Kelso, J., Andrés, A. M., & Pääbo, S. (2014). Patterns of coding variation in the complete exomes of three Neandertals. Proceedings of the National Academy of Sciences of the United States of America,111(18), 6666-6671. DOI PubMed BibTeX Endnote | |
| Dabney, J. (2014). Increasing access to highly damaged DNA from ancient samples. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Dabney, J., Meyer, M., & Pääbo, S. (2014). Ancient DNA damage. In E. C. Friedberg, S. J. Elledge, A. R. Lehmann, T. Lindahl, & M. Muzi-Falconi ( BibTeX Endnote | |
| Deelen, P., Menelaou, A., van Leeuwen, E. M., Kanterakis, A., van Dijk, F., Medina-Gomez, C., Francioli, L. C., Hottenga, J. J., Karssen, L. C., Estrada, K., Kreiner-Møller, E., Rivadeneira, F., van Setten, J., Gutierrez-Achury, J., Westra, H.-J., Franke, L., van Enckevort, D., Dijkstra, M., Byelas, H., van Duijn, C. M., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others, de Bakker, P. I. W., Wijmenga, C., & Swertz, M. A. (2014). Improved imputation quality of low-frequency and rare variants in European samples using the 'Genome of The Netherlands'. European Journal of Human Genetics,22(11), 1321-1326. Open Access DOI BibTeX Endnote | |
| Delfin, F. S., Ko, A.-M.-S., Li, M., Gunnarsdóttir, E. D., Tabbada, K. A., Salvador, J. M., Calacal, G. C., Sagum, M. S., Datar, F. A., Padilla, S. G., Ungria, M. C. A. D., & Stoneking, M. (2014). Complete mtDNA genomes of Filipino ethnolinguistic groups: A melting pot of recent and ancient lineages in the Asia-Pacific region. European journal of human genetics,22(2), 228-237. DOI BibTeX Endnote | |
| Duggan, A. T. (2014). Investigations of the settlement and demographic history of Oceania through whole mitochondrial genome sequence analysis. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Duggan, A. T., & Stoneking, M. (2014). Recent developments in the genetic history of East Asia and Oceania. Current Opinion in Genetics & Development,29, 9-14. DOI BibTeX Endnote | |
| Duggan, A. T., Evans, B., Friedlaender, F. R., Friedlaender, J. S., Koki, G., Merriwether, D. A., Kayser, M., & Stoneking, M. (2014). Maternal history of Oceania from complete mtDNA genomes: Contrasting ancient diversity with recent homogenization due to the Austronesian expansion. The American Journal of Human Genetics,94(5), 721-733. DOI BibTeX Endnote | |
| Engelken, J., Carnero-Montoro, E., Pybus, M., Andrews, G. K., Lalueza-Fox, C., Comas, D., Sekler, I., de la Rasilla, M., Rosas, A., Stoneking, M., Valverde, M. A., Vicente, R., & Bosch, E. (2014). Extreme population differences in the human zinc transporter ZIP4 (SLC39A4) are explained by positive selection in Sub-Saharan Africa. PLoS Genetics,10(2): e1004128. Open Access DOI BibTeX Endnote | |
| Francioli, L. C., Menelaou, A., Pulit, S. L., van Dijk, F., Palamara, P. F., Elbers, C. C., Neerincx, P. B. T., Ye, K., Guryev, V., Kloosterman, W. P., Deelen, P., Abdellaoui, A., van Leeuwen, E. M., van Oven, M., Vermaat, M., Li, M., Laros, J. F. J., Karssen, L. C., Kanterakis, A., Amin, N., Hottenga, J. J., Lameijer, E.-W., Kattenberg, M., Dijkstra, M., Byelas, H., van Setten, J., van Schaik, B. D. C., Bot, J., Nijman, I. J., Renkens, I., Marschall, T., Schönhuth, A., Hehir-Kwa, J. Y., Handsaker, R. E., Polak, P., Sohail, M., Vuzman, D., Hormozdiari, F., van Enckevort, D., Mei, H., Koval, V., Moed, M. H., van der Velde, K. J., Rivadeneira, F., Estrada, K., Medina-Gomez, C., Isaacs, A., McCarroll, S. A., Beekman, M., de Craen, A. J. M., Suchiman, H. E. D., Hofman, A., Oostra, B., Uitterlinden, A. G., Willemsen, G., Study, L. C., Platteel, M., Veldink, J. H., van den Berg, L. H., Pitts, S. J., Potluri, S., Sundar, P., Cox, D. R., Sunyaev, S. R., den Dunnen, J. T., Stoneking, M., de Knijff, P., Kayser, M., Li, Q., Li, Y., Du, Y., Chen, R., Cao, H., Li, N., Cao, S., Wang, J., Bovenberg, J. A., Pe'er, I., Slagboom, P. E., van Duijn, C. M., Boomsma, D. I., van Ommen, G.-J.-B., de Bakker, P. I. W., Swertz, M. A., Wijmenga, C., & Genome of the Netherlands Consortium, The (2014). Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nature Genetics,46(8), 818-825. DOI BibTeX Endnote | |
| Fu, Q., Li, H., Moorjani, P., Jay, F., Slepchenko, S. M., Bondarev, A. A., Johnson, P. L. F., Ayinuer-Petri, A., Prüfer, K., de Filippo, C., Meyer, M., Zwyns, N., Salazar García, D. C., Kuzmin, Y. V., Keates, S. G., Kosintsev, P. A., Razhev, D. I., Richards, M. P., Peristov, N. V., Lachmann, M., Douka, K., Higham, T. F. G., Slatkin, M., Hublin, J.-J., Reich, D., Kelso, J., Viola, B., & Pääbo, S. (2014). Genome sequence of a 45,000-year-old modern human from western Siberia. Nature,514(7523), 445-449. DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2014). Selective enrichment of damaged DNA molecules for ancient genome sequencing. Genome Research,24(9), 1543-1549. Open Access DOI BibTeX Endnote | |
| Gerth, M., Gansauge, M.-T., Weigert, A., & Bleidorn, C. (2014). Phylogenomic analyses uncover origin and spread of the Wolbachia pandemic. Nature Communications,5: 5117. DOI BibTeX Endnote | |
| Giuliani, C., Barbieri, C., Li, M., Bucci, L., Monti, D., Passarino, G., Luiselli, D., Franceschi, C., Stoneking, M., & Garagnani, P. (2014). Transmission from centenarians to their offspring of mtDNA heteroplasmy revealed by ultra-deep sequencing. Aging,6(6), 454-467. Open Access DOI BibTeX Endnote | |
| Gokhman, D., Lavi, E., Prüfer, K., Fraga, M. F., Riancho, J. A., Kelso, J., Pääbo, S., Meshorer, E., & Carmel, L. (2014). Reconstructing the DNA methylation maps of the Neandertal and the Denisovan. Science,344(6183), 523-527. DOI BibTeX Endnote | |
| Guo, J., Tan, J., Yang, Y., Zhou, H., Hu, S., Hashan, A., Bahaxar, N., Xu, S., Weaver, T. D., Jin, L., Stoneking, M., & Tang, K. (2014). Variation and signatures of selection on the human face. Journal of Human Evolution,75, 143-152. Open Access DOI BibTeX Endnote | |
| He, Z., Bammann, H., Han, D., Xie, G., & Khaitovich, P. (2014). Conserved expression of lincRNA during human and macaque prefrontal cortex development and maturation. RNA,20(7), 1103-1111. Open Access DOI BibTeX Endnote | |
| Hellenthal, G., Busby, G. B. J., Band, G., Wilson, J. F., Capelli, C., Falush, D., & Myers, S. (2014). A genetic atlas of human admixture history. Science,373(6172), 747-751. DOI BibTeX Endnote | |
| Henne, K., Li, J., Stoneking, M., Kessler, O., Schilling, H., Sonanini, A., Conrads, G., & Horz, H.-P. (2014). Global analysis of saliva as a source of bacterial genes for insights into human population structure and migration studies. BMC Evolutionary Biology,14: 190. Open Access DOI BibTeX Endnote | |
| Heyn, P., Kircher, M., Dahl, A., Kelso, J., Tomancak, P., Kalinka, A. T., & Neugebauer, K. M. (2014). The earliest transcribed zygotic genes are short, newly evolved and different across species. Cell Reports,6(2), 285-292. Open Access DOI BibTeX Endnote | |
| Heyne, H. O., Lautenschläger, S., Nelson, R., Besnier, F., Rotival, M., Cagan, A., Kozhemyakina, R., Plyusnina, I. Z., Trut, L., Carlborg, Ö., Petretto, E., Kruglyak, L., Pääbo, S., Schöneberg, T., & Albert, F. W. (2014). Genetic influences on brain gene expression in rats selected for tameness and aggression. Genetics,198(3), 1277-1290. DOI BibTeX Endnote | |
| Horn, S. (2014). TERT-Promoter-Mutationen im familiären und sporadischen Melanom. In Lebendige Wissenschaft: Spitzenforschung in der Dermatologie - Innovationen und Auszeichnungen 2014 (pp. 52-57). Lampertheim: Alpha-Informations-GmbH. BibTeX Endnote | |
| Horn, S., Prost, S., Stiller, M., Makowiecki, D., Kuznetsova, T., Benecke, N., Pucher, E., Hufthammer, A. K., Schouwenburg, C., Shapiro, B., & Hofreiter, M. (2014). Ancient mitochondrial DNA and the genetic history of Eurasian beaver (Castor fiber) in Europe. Molecular Ecology,23(7), 1717-1729. DOI BibTeX Endnote | |
| Hu, H. Y., He, L., & Khaitovich, P. (2014). Deep sequencing reveals a novel class of bidirectional promoters associated with neuronal genes. BMC Genomics,15: 457. Open Access DOI BibTeX Endnote | |
| Kelso, J., & Prüfer, K. (2014). Ancient humans and the origin of modern humans. Current Opinion in Genetics & Development,29, 133-138. DOI BibTeX Endnote | |
| Key, F. M., Peter, B., Dennis, M. Y., Huerta-Sanchez, E., Tang, W., Prokunina-Olsson, L., Nielsen, R., & Andrés, A. M. (2014). Selection on a variant associated with improved viral clearance drives local, adaptive pseudogenization of Interferon Lambda 4 (IFNL 4). PLoS Genetics,10(10): e1004681. Open Access DOI PubMed BibTeX Endnote | |
| Key, F. M., Teixeira, J. C., de Filippo, C., & Andrés, A. M. (2014). Advantageous diversity maintained by balancing selection in humans. Current Opinion in Genetics & Development,29, 45-51. DOI PubMed BibTeX Endnote | |
| Khrameeva, E. E., Bozek, K., He, L., Yan, Z., Jiang, X., Wei, Y., Tang, K., Gelfand, M. S., Prüfer, K., Kelso, J., Pääbo, S., Giavalisco, P., Lachmann, M., & Khaitovich, P. (2014). Neanderthal ancestry drives evolution of lipid catabolism in contemporary Europeans. Nature Communications,5: 3584. Open Access DOI BibTeX Endnote | |
| Ko, A.-M.-S., Chen, C.-Y., Fu, Q., Delfin, F. S., Li, M., Chiu, H.-L., Stoneking, M., & Ko, Y.-C. (2014). Early Austronesians: Into and out of Taiwan. The American Journal of Human Genetics,94(3), 426-436. DOI BibTeX Endnote | |
| Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., Berger, B., Economou, C., Bollongino, R., Fu, Q., Bos, K. I., Nordenfelt, S., Li, H., de Filippo, C., Prüfer, K., Sawyer, S., Posth, C., Haak, W., Hallgren, F., Fornander, E., Rohland, N., Delsate, D., Francken, M., Guinet, J.-M., Wahl, J., Ayodo, G., Babiker, H. A., Bailliet, G., Balanovska, E., Balanovsky, O., Barrantes, R., Bedoya, G., Ben-Ami, H., Bene, J., Berrada, F., Bravi, C. M., Brisighelli, F., Busby, G. B. J., Cali, F., Churnosov, M., Cole, D. E. C., Corach, D., Damba, L., van Driem, G., Dryomov, S., Dugoujon, J.-M., Fedorova, S. A., Romero, I. G., Gubina, M., Hammer, M., Henn, B. M., Hervig, T., Hodoglugil, U., Jha, A. R., Karachanak-Yankova, S., Khusainova, R., Khusnutdinova, E., Kittles, R., Kivisild, T., Klitz, W., Kucinskas, V., Kushniarevich, A., Laredj, L., Litvinov, S., Loukidis, T., Mahley, R. W., Melegh, B., Metspalu, E., Molina, J., Mountain, J., Näkkäläjärvi, K., Nesheva, D., Nyambo, T., Osipova, L., Parik, J., Platonov, F., Posukh, O., Romano, V., Rothhammer, F., Rudan, I., Ruizbakiev, R., Sahakyan, H., Sajantila, A., Salas, A., Starikovskaya, E. B., Tarekegn, A., Toncheva, D., Turdikulova, S., Uktveryte, I., Utevska, O., Vasquez, R., Villena, M., Voevoda, M., Winkler, C. A., Yepiskoposyan, L., Zalloua, P., Zemunik, T., Cooper, A., Capelli, C., Thomas, M. G., Ruiz-Linares, A., Tishkoff, S. A., Singh, L., Thangaraj, K., Villems, R., Comas, D., Sukernik, R., Metspalu, M., Meyer, M., Eichler, E. E., Burger, J., Slatkin, M., Pääbo, S., Kelso, J., Reich, D., & Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature,513(7518), 409-413. DOI BibTeX Endnote | |
| Lee, C.-H., Chiang, S.-L., Ko, A.-M.-S., Hua, C.-H., Tsai, M.-H., Warnakulasuriya, S., Ibrahim, S. O., Sunarjo,.-., Zain, R. B., Ling, T.-Y., Huang, C.-L., Lane, H.-Y., Lin, C.-C., & Ko, Y.-C. (2014). Betel-quid dependence domains and syndrome associated with betel-quid ingredients among chewers: An Asian multi-country evidence. Addiction,109(7), 1194-1204. DOI BibTeX Endnote | |
| Li, J., Quinque, D., Horz, H.-P., Li, M., Rzhetskaya, M., Raff, J. A., Hayes, M. G., & Stoneking, M. (2014). Comparative analysis of the human saliva microbiome from different climate zones: Alaska, Germany, and Africa. BMC Microbiology,14: 316. Open Access DOI BibTeX Endnote | |
| Lindskog, C., Kuhlwilm, M., Davierwala, A., Fu, N., Hegde, G., Uhlén, M., Navani, S., Pääbo, S., & Pontén, a. F. (2014). Analysis of candidate genes for lineage-specific expression changes in humans and primates. Journal of Proteome Research,13(8), 3596-3606. DOI BibTeX Endnote | |
| Lippold, S., Xu, H., Ko, A., Li, M., Renaud, G., Butthoff, A., Schröder, R., & Stoneking, M. (2014). Human paternal and maternal demographic histories: Insights from high-resolution Y chromosome and mtDNA sequences. Investigative Genetics,5: 13. Open Access DOI BibTeX Endnote | |
| Lipson, M., Loh, P.-R., Patterson, N., Moorjani, P., Ko, Y.-C., Stoneking, M., Berger, B., & Reich, D. (2014). Reconstructing Austronesian population history in Island Southeast Asia. Nature Communications,5: 4689. Open Access DOI BibTeX Endnote | |
| Macholdt, E., Lede, V., Barbieri, C., Mpoloka, S. W., Chen, H., Slatkin, M., Pakendorf, B., & Stoneking, M. (2014). Tracing pastoralist migrations to Southern Africa with lactase persistence alleles. Current Biology,24(8), 875-879. DOI BibTeX Endnote | |
| Malaspinas, A.-S., Lao, O., Schroeder, H., Rasmussen, M., Raghavan, M., Moltke, I., Campos, P. F., Sagredo, F. S., Rasmussen, S., Gonçalves, V. F., Albrechtsen, A., Allentoft, M. E., Johnson, P. L., Li, M., Reis, S., Bernardo, D. V., DeGiorgio, M., Duggan, A. T., Bastos, M., Wang, Y., Stenderup, J., Moreno-Mayar, J. V., Brunak, S., Sicheritz-Ponten, T., Hodges, E., Hannon, G. J., Orlando, L., Price, T. D., Jensen, J. D., Nielsen, R., Heinemeier, J., Olsen, J., Rodrigues-Carvalho, C., Lahr, M. M., Neves, W. A., Kayser, M., Higham, T., Stoneking, M., Pena, S. D., & Willerslev, E. (2014). Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. Current Biology,24(21), R1035-R1037. DOI BibTeX Endnote | |
| Meyer, M., Fu, Q., Ayinuer-Petri, A., Glocke, I., Nickel, B., Arsuaga, J.-L., Martínez, I., Gracia, A., de Castro, J. M. B., Carbonell, E., & Pääbo, S. (2014). A mitochondrial genome sequence of a hominin from Sima de los Huesos. Nature,505(7483), 403-406. DOI BibTeX Endnote | |
| Mitchell, K. J., Pratt, R. C., Watson, L. N., Gibb, G. C., Llamas, B., Kasper, M., Edson, J., Hopwood, B., Male, D., Armstrong, K. N., Meyer, M., Hofreiter, M., Austin, J., Donnellan, S. C., Lee, M. S. Y., Phillips, M. J., & Cooper, A. (2014). Molecular phylogeny, biogeography, and habitat preference evolution of marsupials. Molecular Biology and Evolution,31(9), 2322-2330. DOI BibTeX Endnote | |
| Morris, A. G., Heinze, A., Chan, E. K., Smith, A. B., & Hayes, V. M. (2014). First ancient mitochondrial human genome from a prepastoralist southern African. Genome biology and evolution,6(10), 2647-2653. Open Access DOI BibTeX Endnote | |
| Nigst, P. R., Haesaerts, P., Damblon, F., Frank-Fellner, C., Mallol, C., Viola, B., Götzinger, M., Niven, L., Trnka, G., & Hublin, J.-J. (2014). Early modern human settlement of Europe north of the Alps occurred 43,500 years ago in a cold steppe-type environment. Proceedings of the National Academy of Sciences of the United States of America,111(40), 14394-14399. DOI BibTeX Endnote | |
| O'Brien, J., Didelot, X., Iqbal, Z., Amenga-Etego, L., Ahiska, B., & Falush, D. (2014). A Bayesian approach to inferring the phylogenetic structure of communities from metagenomic data. Genetics,197(3), 925-937. DOI BibTeX Endnote | |
| Oña Bubach, L. (2014). The evolution of cooperation at different levels of organisation and ist applications to evolutionary medicine. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Oven, M. v., Brauer, S., Choi, Y., Ensing, J., Schiefenhövel, W., Stoneking, M., & Kayser, M. (2014). Human genetics of the Kula Ring: Y-chromosome and mitochondrial DNA variation in the Massim of Papua New Guinea. European journal of human genetics,22, 1393-1403. DOI BibTeX Endnote | |
| Pääbo, S. (2014).Die Neandertaler und wir: Meine Suche nach den Urzeit-Genen. Frankfurt a.M.: S. Fischer. BibTeX Endnote | |
| Pääbo, S. (2014).Neanderthal man: In search of lost genomes (Translated into 14 languages). New York: Basic Books. BibTeX Endnote | |
| Pääbo, S. (2014). The human condition: A molecular approach (Review). Cell,157(1), 216-226. DOI BibTeX Endnote | |
| Pfefferle, D., Kazem, A. J. N., Brockhausen, R. R., Ruiz-Lambides, A., & Widdig, A. (2014). Monkeys spontaneously discriminate their unfamiliar paternal relatives under natural conditions using facial cues. Current Biology,24(15), 1806-1810. DOI BibTeX Endnote | |
| Pickrell, J. K., Patterson, N., Loh, P.-R., Lipson, M., Berger, B., Stoneking, M., Pakendorf, B., & Reich, D. (2014). Ancient west Eurasian ancestry in southern and eastern Africa. Proceedings of the National Academy of Sciences of the United States of America,111(7), 2632 -2637. DOI BibTeX Endnote | |
| Prüfer, K., Racimo, F., Patterson, N., Jay, F., Sankararaman, S., Sawyer, S., Heinze, A., Renaud, G., Sudmant, P. H., de Filippo, C., Li, H., Mallick, S., Dannemann, M., Fu, Q., Kircher, M., Kuhlwilm, M., Lachmann, M., Meyer, M., Ongyerth, M., Siebauer, M. F., Theunert, C., Tandon, A., Moorjani, P., Pickrell, J., Mullikin, J. C., Vohr, S. H., Green, R. E., Hellmann, I., Johnson, P. L. F., Blanche, H., Cann, H., Kitzman, J. O., Shendure, J., Eichler, E. E., Lein, E. S., Bakken, T. E., Golovanova, L. V., Doronichev, V. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2014). The complete genome sequence of a Neanderthal from the Altai Mountains. Nature,505(7481), 43-49. DOI BibTeX Endnote | |
| Pybus, M., Dall'Olio, G. M., Luisi, P., Uzkudun, M., Carreño-Torres, A., Pavlidis, P., Laayouni, H., Bertranpetit, J., & Engelken, J. (2014). 1000 genomes selection browser 1.0: A genome browser dedicated to signatures of natural selection in modern humans. Nucleic Acids Research,42(D1), D903-D909. Open Access DOI BibTeX Endnote | |
| Racimo, F., Kuhlwilm, M., & Slatkin, M. (2014). A test for ancient selective sweeps and an application to candidate sites in modern humans. Molecular Biology and Evolution,31(12), 3344-3358. Open Access DOI BibTeX Endnote | |
| Renaud, G., LaFave, M. C., Liang, J., Wolfsberg, T. G., & Burgess, S. M. (2014). trieFinder: an efficient program for annotating Digital Gene Expression (DGE) tags. BMC Bioinformatics,15: 329. Open Access DOI BibTeX Endnote | |
| Renaud, G., Stenzel, U., & Kelso, J. (2014). leeHom: adaptor trimming and merging for Illumina sequencing reads. Nucleic Acids Research (London),42(18): e141. Open Access DOI BibTeX Endnote | |
| Rieux, A., Eriksson, A., Li, M., Sobkowiak, B., Weinert, L. A., Warmuth, V., Ruiz-Linares, A., Manica, A., & Balloux, F. (2014). Improved calibration of the human mitochondrial clock using ancient genomes. Molecular Biology and Evolution,31(10), 2780-2792. Open Access DOI BibTeX Endnote | |
| Romagné, F., Santesmasses, D., White, L., Sarangi, G. K., Mariotti, M., Hübler, R., Weihmann, A., Parra, G., Gladyshev, V. N., Guigó, R., & Castellano, S. (2014). SelenoDB 2.0: Annotation of selenoprotein genes in animals and their genetic diversity in humans. Nucleic Acids Research,42(D1), D437-D443. Open Access DOI BibTeX Endnote | |
| Sankararaman, S., Mallick, S., Dannemann, M., Prüfer, K., Kelso, J., Pääbo, S., Patterson, N., & Reich, D. (2014). The genomic landscape of Neanderthal ancestry in present-day humans. Nature,507(7492), 354-357. DOI BibTeX Endnote | |
| Schreiweis, C., Bornschein, U., Burguière, E., Kerimoglu, C., Schreiter, S., Dannemann, M., Goyal, S., Rea, E., French, C. A., Puliyadi, R., Groszer, M., Fisher, S. E., Mundry, R., Winter, C., Hevers, W., Pääbo, S., Enard, W., & Graybiel, A. M. (2014). Humanized Foxp2 accelerates learning by enhancing transitions from declarative to procedural performance. Proceedings of the National Academy of Sciences of the United States of America,111(39), 14253-14258. DOI BibTeX Endnote | |
| Skoglund, P., Northoff, B. H., Shunkov, M. V., Derevianko, A. P., Pääbo, S., Krause, J., & Jakobsson, M. (2014). Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. Proceedings of the National Academy of Sciences of the United States of America,111(6), 2229-2234. DOI BibTeX Endnote | |
| Stiller, M., Molak, M., Prost, S., Rabeder, G., Baryshnikov, G., Rosendahl, W., Münzel, S., Bocherens, H., Grandal-d'Anglade, A., Hilpert, B., Germonpré, M., Stasyk, O., Pinhasi, R., Tintori, A., Rohland, N., Mohandesan, E., Ho, S. Y., Hofreiter, M., & Knapp, M. (2014). Mitochondrial DNA diversity and evolution of the Pleistocene cave bear complex. Quaternary International,339-340, 224-231. DOI BibTeX Endnote | |
| The SIGMA Type 2 Diabetes Consortium, including authors, Prüfer, K., Sawyer, S., Stenzel, U., Kelso, J., Pääbo, S., & and others (2014). Sequence variants in SLC16A11 are a common risk factor for type 2 diabetes in Mexico. Nature,506, 97-101. DOI BibTeX Endnote | |
| Theunert, C. (2014). Approaches for inferring past population size changes from genome-wide genetic data. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Tu, H.-P., Ko, A.-M.-S., Chiang, S.-L., Lee, S.-S., Lai, H.-M., Chung, C.-M., Huang, C.-M., Lee, C.-H., Kuo, T.-M., Hsieh, M.-J., & Ko, Y.-C. (2014). Joint effects of alcohol consumption and ABCG2 Q141K on chronic tophaceous gout risk. Journal of Rheumatology,41(4), 749-758. DOI BibTeX Endnote | |
| Vilardell, M., Parra, G., & Civit, S. (2014). WISCOD: A statistical web-enabled tool for the identification of significant protein coding regions. BioMed Research International,2014: 282343. Open Access DOI BibTeX Endnote | |
| Weigert, A., Helm, C., Meyer, M., Nickel, B., Arendt, D., Hausdorf, B., Santos, S. R., Halanych, K. M., Purschke, G., Bleidorn, C., & Struck, T. H. (2014). Illuminating the base of the annelid tree using transcriptomics. Molecular Biology and Evolution,31(6), 1391-1401. DOI BibTeX Endnote | |
| Wunderlich, S., Kircher, M., Vieth, B., Haase, A., Merkert, S., Beier, J., Göhring, G., Glage, S., Schambach, A., Curnow, E. C., Pääbo, S., Martin, U., & Enard, W. (2014). Primate iPS cells as tools for evolutionary analyses. Stem Cell Research,12(3), 622-629. Open Access DOI BibTeX Endnote | |
| Yahara, K., Didelot, X., Ansari, M. A., Sheppard, S. K., & Falush, D. (2014). Efficient inference of recombination hot regions in bacterial genomes. Molecular Biology and Evolution,31(6), 1593-1605. Open Access DOI BibTeX Endnote | |
| Zhao, G., Guo, S., Somel, M., & Khaitovich, P. (2014). Evolution of human longevity uncoupled from caloric restriction mechanisms. PLoS One,9(1): e84117. Open Access DOI BibTeX Endnote | |
| Zwyns, N., & Viola, B. (2014). L'Asie centrale et la Sibérie durant le pléistocène supérieur. In M. Otte ( BibTeX Endnote |
2013
| Barbieri, C., Butthoff, A., Bostoen, K., & Pakendorf, B. (2013). Genetic perspectives on the origin of clicks in Bantu languages from southwestern Zambia. European journal of human genetics: EJHG; the official journal of the European Society of Human Genetics,21, 430-436. DOI BibTeX Endnote | |
| Barbieri, C., Vicente, M., Rocha, J., Mpoloka, S. W., Stoneking, M., & Pakendorf, B. (2013). Ancient substructure in early mtDNA lineages of southern Africa. American Journal of Human Genetics,92, 285-292. DOI BibTeX Endnote | |
| Bonazzi, M., Le Cabec, A., Schünemann, V., Viola, B., Harvati, K., Pääbo, S., Hublin, J.-J., Tafforeau, P., & Krause, J. (2012).Evaluation of the influence of computed tomography imaging on ancient DNA recovery. Talk presented at German Society of Anthropology (GfA) 10th International Meeting. Bolzano. 2012-09-02 - 2013-09-06. BibTeX Endnote | |
| Brandariz-Fontes, C., Leonard, J. A., Vega-Pla, J. L., Backström, N., Lindgren, G., Lippold, S., & Rico, C. (2013). Y-Chromosome Analysis in Retuertas Horses. PLoS One,8(5): e64985. Open Access DOI BibTeX Endnote | |
| Bruche, S., Gusset, M., Lippold, S., Barnett, R., Eulenberger, K., Junhold, J., Driscoll, C. A., & Hofreiter, M. (2013). A genetically distinct lion (Panthera leo) population from Ethiopia. European Journal of Wildlife Research,59(2), 215-225. DOI BibTeX Endnote | |
| Bryk, J., Somel, M., Lorenc, A., & Teschke, M. (2013). Early gene expression divergence between allopatric populations of the house mouse (Mus musculus domesticus). Ecology and Evolution,3(3), 558-568. Open Access DOI BibTeX Endnote | |
| Dabney, J., Knapp, M., Glocke, I., Gansauge, M.-T., Weihmann, A., Nickel, B., Valdiosera, C., García, N., Pääbo, S., Arsuaga, J.-L., & Meyer, M. (2013). Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments. Proceedings of the National Academy of Sciences of the United States of America,110(39), 15758-15763. DOI BibTeX Endnote | |
| Dabney, J., Meyer, M., & Pääbo, S. (2013). Ancient DNA damage. Cold Spring Harbor Perspectives in Biology,5(7): a012567. DOI BibTeX Endnote | |
| Dannemann, M. (2013). Application of next generation sequencing to the analysis of evolutionary changes in gene expression in primates. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Donaldson-Matasci, M. C., Bergstrom, C. T., & Lachmann, M. (2013). When unreliable cues are good enough. American Naturalist,182(3), 313-327. DOI BibTeX Endnote | |
| Duggan, A. T., & Stoneking, M. (2013). A highly unstable recent mutation in human mtDNA. American Journal of Human Genetics,92(2), 279-284. DOI BibTeX Endnote | |
| Duggan, A. T., Whitten, C. M., Wiebe, V., Crawford, M., Butthoff, A., Spitsyn, V., Makarov, S., Novgorodov, I., Osakovsky, V., & Pakendorf, B. (2013). Investigating the prehistory of Tungusic peoples of Siberia and the Amur-Ussuri region with complete mtDNA genome sequences and Y-chromosomal markers. PLoS One,8(12): e83570. Open Access DOI BibTeX Endnote | |
| Ferreira, Z., Hurle, B., Andrés, A. M., Kretzschmar, W. W., Mullikin, J. C., Cherukuri, P. F., Cruz, P., Gonder, M. K., Stone, A. C., Tishkoff, S., Swanson, W. J., NISC Comparative Sequencing Program, Green, E. D., Clark, A. G., & Seixas, S. (2013). Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity. Genome Biology and Evolution,5(12), 2512-2523. Open Access DOI PubMed BibTeX Endnote | |
| Ferreira, Z., Seixas, S., Andrés, A. M., Kretzschmar, W. W., Mullikin, J. C., Cherukuri, P. F., Cruz, P., Swanson, W. J., Clark, A. G., Green, E. D., & Hurle, B. (2013). Reproduction and immunity-driven natural selection in the human WFDC locus. Molecular Biology and Evolution,30(4), 938-950. DOI PubMed BibTeX Endnote | |
| Finstermeier, K., Zinner, D., Brameier, M., Meyer, M., Kreuz, E., Hofreiter, M., & Roos, C. (2013). A mitogenomic phylogeny of living primates. PLoS One,8(7): e69504. Open Access DOI BibTeX Endnote | |
| Fu, Q. (2013). Tracing human prehistory with genetic data of ancient and modern humans. PhD Thesis, Univ., Leipzig. BibTeX Endnote | |
| Fu, Q., Meyer, M., Gao, X., Stenzel, U., Burbano, H. A., Kelso, J., & Pääbo, S. (2013). DNA analysis of an early modern human from Tianyuan Cave, China. Proceedings of the National Academy of Sciences of the United States of America,110(6), 2223-2227. DOI BibTeX Endnote | |
| Fu, Q., Mittnik, A., Johnson, P. L., Bos, K., Lari, M., Bollongino, R., Sun, C., Giemsch, L., Schmitz, R., Burger, J., Ronchitelli, A. M., Martini, F., Cremonesi, R. G., Svoboda, J., Bauer, P., Caramelli, D., Castellano, S., Reich, D., Pääbo, S., & Krause, J. (2013). A revised timescale for human evolution based on ancient mitochondrial genomes. Current Biology,23(7), 553-559. Open Access DOI BibTeX Endnote | |
| Gansauge, M.-T., & Meyer, M. (2013). Single-stranded DNA library preparation for the sequencing of ancient or damaged DNA. Nature Protocols,8(4), 737-748. DOI BibTeX Endnote | |
| Good, J. M., Wiebe, V., Albert, F., Burbano, H. A., Kircher, M., Green, R. E., Halbwax, M., André, C., Atencia, R., Fischer, A., & Pääbo, S. (2013). Comparative population genomics of the ejaculate in humans and the great apes. Molecular Biology and Evolution,30(4), 964-976. DOI BibTeX Endnote | |
| Grossmann, T., Vaish, A., Franz, J., Schroeder, R., Stoneking, M., & Friederici, A. D. (2013). Emotional voice processing: Investigating the role of genetic variation in the serotonin transporter across development. PLoS One,8(7): e68377. Open Access DOI BibTeX Endnote | |
| Guschanski, K., Krause, J., Sawyer, S., Valente, L. M., Bailey, S., Finstermeier, K., Sabin, R., Gilissen, E., Sonet, G., Nagy, Z. T., Lenglet, G., Mayer, F., & Savolainen, V. (2013). Next-generation museomics disentangles one of the largest primate radiations. Systematic Biology,62(4), 539-554. Open Access DOI BibTeX Endnote | |
| Ka, S., Markljung, E., Ring, H., Albert, F. W., Harun-Or-Rashid, M., Wahlberg, P., Garcia-Roves, P. M., Zierath, J. R., Denbow, D. M., Pääbo, S., Siegel, P. B., Andersson, L., & Hallbook, F. (2013). Expression of carnitine palmitoyl-CoA transferase-1B is influenced by a cis-acting eQTL in two chicken lines selected for high and low body weight. Physiological Genomics,45(9), 367-376. DOI BibTeX Endnote | |
| Ko, A.-M.-S., Tu, H.-P., Liu, T.-T., Chang, J.-G., Yuo, C.-Y., Chiang, S.-L., Chang, S.-J., Liu, Y.-F., Ko, A.-M.-J., Lee, C.-H., Lee, C.-P., Chang, C.-M., Tsai, S.-F., & Ko, Y.-C. (2013). ALPK1 genetic regulation and risk in relation to gout. International Journal of Epidemiology,42(2), 466-474. DOI BibTeX Endnote | |
| Kuhlwilm, M., Davierwala, A., & Pääbo, S. (2013). Identification of putative target genes of the transcription factor RUNX2. PLoS One,8(12): e83218. Open Access DOI BibTeX Endnote | |
| Kunz, M., Dannemann, M., & Kelso, J. (2013). High-throughput sequencing of the melanoma genome. Experimental Dermatology,22(1), 10-17. DOI BibTeX Endnote | |
| Lachmann, M. (2013). The value of information in signals and cues. In U. E. Stegmann ( DOI BibTeX Endnote | |
| Li, J., Nasidze, I., Quinque, D., Li, M., Horz, H.-P., Andre, C., Garriga, R. M., Halbwax, M., Fischer, A., & Stoneking, M. (2013). The saliva microbiome of Pan and Homo. BMC Microbiology,13: 204. Open Access DOI BibTeX Endnote | |
| Li, Z., Bammann, H., Li, M., Liang, H., Yan, Z., Chen, Y.-P.-P., Zhao, M., & Khaitovich, P. (2013). Evolutionary and ontogenetic changes in RNA editing in human, chimpanzee, and macaque brains. RNA,19(12), 1693-1702. Open Access DOI BibTeX Endnote | |
| Maricic, T., Günther, V., Georgiev, O., Gehre, S., Curlin, M., Schreiweis, C., Naumann, R., Burbano, H. A., Meyer, M., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Gajovic, S., Kelso, J., Enard, W., Schaffner, W., & Pääbo, S. (2013). A recent evolutionary change affects a regulatory element in the human FOXP2 gene. Molecular Biology and Evolution,30(4), 844-852. DOI BibTeX Endnote | |
| Mazin, P., Xiong, J., Liu, X., Yan, Z., Zhang, X., Li, M., He, L., Somel, M., Yuan, Y., Chen, Y.-P.-P., Li, N., Hu, Y., Fu, N., Ning, Z., Zeng, R., Yang, H., Chen, W., Gelfand, M., & Khaitovich, P. (2013). Widespread splicing changes in human brain development and aging. Molecular Systems Biology,9: 663. DOI BibTeX Endnote | |
| Oña Bubach, L. (2013). On the role of resonance in drug failure under HIV treatment interruption. Theoretical Biology & Medical Modelling,10: 44. Open Access DOI BibTeX Endnote | |
| Prado-Martinez, J., Hernando-Herraez, I., Lorente-Galdos, B., Dabad, M., Ramirez, O., Baeza-Delgado, C., Morcillo-Suarez, C., Alkan, C., Hormozdiari, F., Raineri, E., Estellé, J., Fernandez-Callejo, M., Valles, M., Ritscher, L., Schöneberg, T., de la Calle-Mustienes, E., Casillas, S., Rubio-Acero, R., Melé, M., Engelken, J., Caceres, M., Gomez-Skarmeta, J. L., Gut, M., Bertranpetit, J., Gut, I. G., Abello, T., Eichler, E. E., Mingarro, I., Lalueza-Fox, C., Navarro, A., & Marques-Bonet, T. (2013). The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. BMC Genomics,14: 363. Open Access DOI BibTeX Endnote | |
| Prado-Martinez, J., Sudmant, P. H., Kidd, J. M., Li, H., Kelley, J. L., Lorente-Galdos, B., Veeramah, K. R., Woerner, A. E., O’Connor, T. D., Santpere, G., Cagan, A., Theunert, C., Casals, F., Laayouni, H., Munch, K., Hobolth, A., Halager, A. E., Malig, M., Hernandez-Rodriguez, J., Hernando-Herraez, I., Prüfer, K., Pybus, M., Johnstone, L., Lachmann, M., Alkan, C., Twigg, D., Petit, N., Baker, C., Hormozdiari, F., Fernandez-Callejo, M., Dabad, M., Wilson, M. L., Stevison, L., Camprubí, C., Carvalho, T., Ruiz-Herrera, A., Vives, L., Mele, M., Abello, T., Kondova, I., Bontrop, R. E., Pusey, A., Lankester, F., Kiyang, J. A., Bergl, R. A., Lonsdorf, E., Myers, S., Ventura, M., Gagneux, P., Comas, D., Siegismund, H., Blanc, J., Agueda-Calpena, L., Gut, M., Fulton, L., Tishkoff, S. A., Mullikin, J. C., Wilson, R. K., Gut, I. G., Gonder, M. K., Ryder, O. A., Hahn, B. H., Navarro, A., Akey, J. M., Bertranpetit, J., Reich, D., Mailund, T., Schierup, M. H., Hvilsom, C., Andrés, A. M., Wall, J. D., Bustamante, C. D., Hammer, M. F., Eichler, E. E., & Marques-Bonet, T. (2013). Great ape genetic diversity and population history. Nature,499, 471-475. Open Access DOI PubMed BibTeX Endnote | |
| Prüfer, K., Langergraber, K. E., Pääbo, S., & Vigilant, L. (2013). Reply to Gibb and Hills: Divergence times, generation lengths and mutation rates in great apes and humans. Proceedings of the National Academy of Sciences of the United States of America,110(8): E612. DOI BibTeX Endnote | |
| Pugach, I., & Stoneking, M. (2013). Reply to Price and Bird: No inconsistency between the date of gene flow from India and the Australian archaeological record. Proceedings of the National Academy of Sciences of the United States of America,110(32): E2949. DOI BibTeX Endnote | |
| Pugach, I., Delfin, F., Gunnarsdóttir, E., Kayser, M., & Stoneking, M. (2013). Genome-wide data substantiate Holocene gene flow from India to Australia. Proceedings of the National Academy of Sciences of the United States of America,110(5), 1803-1808. DOI BibTeX Endnote | |
| Renaud, G., Kircher, M., Stenzel, U., & Kelso, J. (2013). freeIbis: An efficient basecaller with calibrated quality scores for Illumina sequencers. Bioinformatics,29(9), 1208-1209. Open Access DOI BibTeX Endnote | |
| Sheppard, S. K., Didelot, X., Meric, G., Torralbo, A., Jolley, K. A., Kelly, D. J., Bentley, S. D., Maiden, M. C. J., Parkhill, J., & Falush, D. (2013). Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter. Proceedings of the National Academy of Sciences of the United States of America,110(29), 11923-11927. DOI BibTeX Endnote | |
| Somel, M., Liu, X., & Khaitovich, P. (2013). Human brain evolution: transcripts, metabolites and their regulators. Nature Reviews Neuroscience,14(2), 112-127. DOI BibTeX Endnote | |
| Stiller, M., & Hofreiter, M. (2013). An ancient DNA perspective on the cave bears from Pestera cu Oase, Romani. In E. Trinkaus, S. Constantin, & J. Zilhão ( BibTeX Endnote | |
| Stoneking, M. (2013). Mitochondrial genome: Evolution. In Encyclopedia of the Life Sciences. Chichester [u.a.]: Wiley. DOI BibTeX Endnote | |
| Stoneking, M., & Harvati, K. (2013). Early Old World migrations of Homo sapiens: human biology. In The Encyclopedia of Global Human Migration, P. I. Hoboken, NJ: Wiley-Backwell. DOI BibTeX Endnote | |
| Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D. L., Germonpré, M. B., Sablin, M. V., López-Giráldez, F., Domingo-Roura, X., Napierala, H., Uerpmann, H.-P., Loponte, D. M., Acosta, A. A., Giemsch, L., Schmitz, R. W., Worthington, B., Buikstra, J. E., Druzhkova, A., Graphodatsky, A. S., Ovodov, N. D., Wahlberg, N., Freedman, A. H., Schweizer, R. M., Koepfli, K.-P., Leonard, J. A., Meyer, M., Krause, J., Pääbo, S., Green, R. E., & Wayne, R. K. (2013). Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science,342(6160), 871-874. DOI BibTeX Endnote | |
| Viola, B., & Pääbo, S. (2013). What's new in Central Asia? In M. V. Shunkov, & V. Molodin ( BibTeX Endnote | |
| Yahara, K., Furuta, Y., Oshima, K., Yoshida, M., Azuma, T., Hattori, M., Uchiyama, I., & Kobayashi, I. (2013). Chromosome Painting In Silico in a Bacterial Species Reveals Fine Population Structure. Molecular Biology and Evolution,30(6), 1454-1464. DOI BibTeX Endnote |
2012
| Albert, F. W., Somel, M., Carneiro, M., Aximu-Petri, A., Halbwax, M., Thalmann, O., Blanco-Aguiar, J. A., Plyusnina, I. Z., Trut, L., Villafuerte, R., Ferrand, N., Kaiser, S., Jensen, P., & Pääbo, S. (2012). A comparison of brain gene expression levels in domesticated and wild animals. PLoS Genetics,8(9): e1002962. Open Access DOI BibTeX Endnote | |
| Ballantyne, K. N., van Oven, M., Ralf, A., Stoneking, M., Mitchell, R. J., van Oorschot, R. A., & Kayser, M. (2012). MtDNA SNP multiplexes for efficient inference of matrilineal genetic ancestry within Oceania. Forensic Science International: Genetics,6(4), 425-436. DOI BibTeX Endnote | |
| Barbieri, C., Whitten, M., Beyer, K., Schreiber, H., Li, M., & Pakendorf, B. (2012). Contrasting maternal and paternal histories in the linguistic context of Burkina Faso. Molecular Biology and Evolution,29(4), 1213 -1223. DOI BibTeX Endnote | |
| Burbano, H. A. (2012). Targeted sequencing of Neandertal DNA: Insights into recent coding and non-coding evolution on the human lineage. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Burbano, H. A., Green, R. E., Maricic, T., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Kelso, J., Pollard, K. S., Lachmann, M., & Pääbo, S. (2012). Analysis of human accelerated DNA regions using archaic hominin genomes. PLoS One,7(3): e32877. Open Access DOI BibTeX Endnote | |
| Carneiro, M., Albert, F. W., Melo-Ferreira, J., Galtier, N., Gayral, P., Blanco-Aguiar, J. A., Villafuerte, R., Nachman, M. W., & Ferrand, N. (2012). Evidence for Widespread Positive and Purifying Selection Across the European Rabbit (Oryctolagus cuniculus) Genome. Molecular Biology and Evolution,29(7), 1837-1849. DOI BibTeX Endnote | |
| Carnero-Montoro, E., Bonet, L., Engelken, J., Bielig, T., Martínez-Florensa, M., Lozano, F., & Bosch, E. (2012). Evolutionary and functional evidence for positive selection at the human CD5 immune receptor gene. Molecular Biology and Evolution,29(2), 811-823. DOI BibTeX Endnote | |
| Clovis, Y. M., Enard, W., Marinaro, F., Huttner, W. B., & Tonelli, D. D. P. (2012). Convergent repression of Foxp2 3'UTR by miR-9 and miR-132 in embryonic mouse neocortex: implications for radial migration of neurons. Development,139(18), 3332-3342. DOI BibTeX Endnote | |
| Dabney, J., & Meyer, M. (2012). Length and GC-biases during sequencing library amplification: A comparison of various polymerase-buffer systems with ancient and modern DNA sequencing libraries. BioTechniques,52(2), 87-94. DOI BibTeX Endnote | |
| Dannemann, M., Lachmann, M., & Lorenc, A. (2012). 'maskBAD' – a package to detect and remove Affymetrix probes with binding affinity differences. BMC Bioinformatics,13: 56. Open Access DOI BibTeX Endnote | |
| Dannemann, M., Nickel, B., Lizano, E., Burbano, H., & Kelso, J. (2012). Annotation of primate miRNAs by high throughput sequencing of small RNA libraries. BMC Genomics,13(Suppl. 3): 116. Open Access DOI BibTeX Endnote | |
| Dannemann, M., Prüfer, K., Lizano, E., Nickel, B., Burbano, H. A., & Kelso, J. (2012). Transcription factors are targeted by differentially expressed miRNAs in primates. Genome biology and evolution,4(4), 552-564. DOI BibTeX Endnote | |
| de Filippo, C., Bostoen, K., Stoneking, M., & Pakendorf, B. (2012). Bringing together linguistic and genetic evidence to test the Bantu expansion. Proceedings of the Royal Society B: Biological Sciences,279(1741), 3256-3263. DOI BibTeX Endnote | |
| Delfin, F., Myles, S., Choi, Y., Hughes, D., Illek, R., van Oven, M., Pakendorf, B., Kayser, M., & Stoneking, M. (2012). Bridging Near and Remote Oceania: mtDNA and NRY Variation in the Solomon Islands. Molecular Biology and Evolution,29(2), 545-564. DOI BibTeX Endnote | |
| Didelot, X., Méric, G., Falush, D., & Darling, A. E. (2012). Impact of homologous and non-homologous recombination in the genomic evolution of Escherichia coli. BMC Genomics,13: 256. Open Access DOI BibTeX Endnote | |
| Enard, W. (2012). Functional primate genomics - leveraging the medical potential. Journal of Molecular Medicine,90(5), 471-480. DOI BibTeX Endnote | |
| Fietz, S. A., Lachmann, R., Brandl, H., Kircher, M., Samusik, N., Schröder, R., Lakshmanaperumal, N., Henry, I., Vogt, J., Riehn, A., Distler, W., Nitsch, R., Enard, W., Pääbo, S., & Huttner, W. B. (2012). Transcriptomes of germinal zones of human and mouse fetal neocortex suggest a role of extracellular matrix in progenitor self-renewal. Proceedings of the National Academy of Sciences of the United States of America,109(29), 11836-11841. DOI BibTeX Endnote | |
| Fu, Q., Rudan, P., Pääbo, S., & Krause, J. (2012). Complete mitochondrial genomes reveal neolithic expansion into Europe. PLoS One,7(3): e32473. Open Access DOI BibTeX Endnote | |
| Glocke, I. (2012). Sequenzierung von DNA aus sehr altem und stark degradiertem Probenmaterial. Master Thesis, Universität, Leipzig. BibTeX Endnote | |
| Gravlund, P., Aaris-Sørensen, K., Hofreiter, M., Meyer, M., Bollback, J. P., & Noe-Nygaar, N. (2012). Ancient DNA extracted from Danish aurochs (Bos primigenius): Genetic diversity and preservation. Annals of Anatomy - Anatomischer Anzeiger,194(1), 103-111. DOI BibTeX Endnote | |
| Groß, A., Hartung, M., Prüfer, K., Kelso, J., & Rahm, E. (2012). Impact of ontology evolution on functional analyses. Bioinformatics,28(20), 2671-2677. DOI BibTeX Endnote | |
| Han, Y., Han, D., Yan, Z., Boyd-Kirkup, J. D., Green, C. D., Khaitovich, P., & Han, J.-D.-J. (2012). Stress-associated H3K4 methylation accumulates during postnatal development and aging of rhesus macaque brain. Aging Cell,11(6), 1055-1064. DOI BibTeX Endnote | |
| Hartmann, S., Helm, C., Nickel, B., Meyer, M., Struck, T. H., Tiedemann, R., Selbig, J., & Bleidorn, C. (2012). Exploiting gene families for phylogenomic analysis of myzostomid transcriptome data. PLoS One,7(1): e29843. Open Access DOI BibTeX Endnote | |
| Helm, C., Bernhart, S. H., Siederdissen, C. H. z., Nickel, B., & Bleidorn, C. (2012). Deep sequencing of small RNAs confirms an annelid affinity of Myzostomida. Molecular Phylogenetics and Evolution,64(1), 198-203. DOI BibTeX Endnote | |
| Hering, L., Henze, M. J., Kohler, M., Kelber, A., Bleidorn, C., Leschke, M., Nickel, B., Meyer, M., Kircher, M., Sunnucks, P., & Mayer, G. (2012). Opsins in onychophora (velvet worms) suggest a single origin and subsequent diversification of visual pigments in arthropods. Molecular Biology and Evolution,29(11), 3451-3458. DOI BibTeX Endnote | |
| Hevers, W., & Lüddens, H. (2012). Pharmakologische und präklinische Grundlagen: Aminosäuren. In Handbuch der Psychopharmakotherapie (2. Aufl., pp. 169-184). Berlin [u.a.]: Springer. DOI BibTeX Endnote | |
| Horn, S. (2012). Case study: enrichment of ancient mitochondrial DNA by hybridization capture. In B. Shapiro, & M. Hofreiter ( DOI BibTeX Endnote | |
| Horn, S. (2012). Target Enrichment via DNA Hybridization Capture. In B. Shapiro, & M. Hofreiter ( DOI BibTeX Endnote | |
| Hu, H. Y., He, L., Fominykh, K., Yan, Z., Guo, S., Zhang, X., Taylor, M. S., Tang, L., Li, J., Liu, J., Wang, W., Yu, H., & Khaitovich, P. (2012). Evolution of the human-specific microRNA miR-941. Nature Communications,3: 1145. Open Access DOI BibTeX Endnote | |
| Jinam, T. A., Hong, L.-C., Phipps, M. E., Stoneking, M., Ameen, M., Edo, J., HUGO Pan-Asian SNP Consortium, & Saitou, N. (2012). Evolutionary history of continental South East Asians: "Early Train" hypothesis based on genetic analysis of mitochondrial and autosomal DNA data. Molecular Biology and Evolution,29(11), 3513-3527. DOI BibTeX Endnote | |
| Kenny, E. E., Timpson, N. J., Sikora, M., Yee, M.-C., Moreno-Estrada, A., Eng, C., Huntsman, S., Burchard, E. G., Stoneking, M., Bustamante, C. D., & Myles, S. (2012). Melanesian blond hair is caused by an amino acid change in TYRP1. Science,336(6081), 554-554. DOI BibTeX Endnote | |
| Khrameeva, E. E., Mironov, A. A., Fedonin, G. G., Khaitovich, P., & Gelfand, M. S. (2012). Spatial proximity and similarity of the epigenetic state of genome domains. PLoS One,7(4): e33947. Open Access DOI BibTeX Endnote | |
| Kircher, M. (2012). Analysis of high-throughput ancient DNA sequencing data. In B. Shapiro, & M. Hofreiter ( DOI BibTeX Endnote | |
| Kircher, M., Sawyer, S., & Meyer, M. (2012). Double indexing overcomes inaccuracies in multiplex sequencing on the Illumina platform. Nucleic Acids Research,40(1): e3. Open Access DOI BibTeX Endnote | |
| Knapp, M., Stiller, M., & Meyer, M. (2012). Generating barcoded libraries for multiplex high-throughput sequencing. In B. Shapiro, & M. Hofreiter ( DOI BibTeX Endnote | |
| Langergraber, K., Pruefer, K., Rowney, C., Boesch, C., Crockford, C., Fawcett, K., Inoue, E., Inoue-Muruyama, M., Mitani, J. C., Muller, M. N., Robbins, M. M., Schubert, G., Stoinski, T. S., Viola, B., Watts, D., Wittig, R., Wrangham, R. W., Zuberbühler, K., Pääbo, S., & Vigilant, L. (2012). Generation times in wild chimpanzees and gorillas suggest earlier divergence times in great ape and human evolution. Proceedings of the National Academy of Sciences of the United States of America,109(39), 15716-15721. DOI BibTeX Endnote | |
| Lawson, D. J., & Falush, D. (2012). Population identification using genetic data. Annual Review of Genomics and Human Genetics,13, 337-361. DOI BibTeX Endnote | |
| Lawson, D. J., Hellenthal, G., Myers, S., & Falush, D. (2012). Inference of Population Structure using Dense Haplotype Data. PLoS Genetics,8(1): e1002453. Open Access DOI BibTeX Endnote | |
| Lee, C.-H., Ko, A.-M.-S., Yen, C.-F., Chu, K.-S., Gao, Y.-J., Warnakulasuriya, S., Sunarjo,.-., Ibrahim, S. O., Zain, R. B., Patrick, W. K., & Ko, Y.-C. (2012). Betel-quid dependence and oral potentially malignant disorders in six Asian countries. British Journal of Psychiatry,201(5), 383-391. DOI BibTeX Endnote | |
| Li, J., Menard, V., Benish, R. L., Jurevic, R. J., Guillemette, C., Stoneking, M., Zimmerman, P. A., & Mehlotra, R. K. (2012). Worldwide variation in human drug-metabolism enzyme genes CYP2B6 and UGT2B7: implications for HIV/AIDS treatment. Pharmacogenomics,13(5), 555-570. DOI BibTeX Endnote | |
| Li, M., & Stoneking, M. (2012). A new approach for detecting low-level mutations in next-generation sequence data. Genome Biology,13(5): R34. Open Access DOI BibTeX Endnote | |
| Li, M., Schröder, R., Ko, A.-M.-S., & Stoneking, M. (2012). Fidelity of capture-enrichment for mtDNA genome sequencing: influence of NUMTs. Nucleic Acids Research,40(18): e137. Open Access DOI BibTeX Endnote | |
| Liu, X., Somel, M., Tang, L., Yan, Z., Jiang, X., Guo, S., Yuan, Y., He, L., Oleksiak, A., Zhang, Y., Li, N., Hu, Y., Chen, W., Qiu, Z., Pääbo, S., & Khaitovich, P. (2012). Extension of cortical synaptic development distinguishes humans from chimpanzees and macaques. Genome Research,22(4), 611-622. Open Access DOI BibTeX Endnote | |
| Mailund, T., Halager, A. E., Westergaard, M., Dutheil, J. Y., Munch, K., Andersen, L. N., Lunter, G., Pruefer, K., Scally, A., Hobolth, A., & Schierup, M. H. (2012). A new isolation with migration model along complete genomes infers very different divergence processes among closely related great ape species. PLoS Genetics,8(12): e1003125. Open Access DOI BibTeX Endnote | |
| Maricic, T. (2012). Development of methods for high-throughput DNA sequencing of the Neandertal genome. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Meyer, M., Kircher, M., Gansauge, M.-T., Li, H., Racimo, F., Mallick, S., Schraiber, J. G., Jay, F., Prüfer, K., Filippo, C. d., Sudmant, P. H., Alkan, C., Fu, Q., Do, R., Rohland, N., Tandon, A., Siebauer, M., Green, R. E., Bryc, K., Briggs, A. W., Stenzel, U., Dabney, J., Shendure, J., Kitzman, J., Hammer, M. F., Shunkov, M. V., Derevianko, A. P., Patterson, N., Andrés, A. M., Eichler, E. E., Slatkin, M., Reich, D., Kelso, J., & Pääbo, S. (2012). A high-coverage genome sequence from an archaic Denisovan individual. Science,338(6104), 222-226. DOI PubMed BibTeX Endnote | |
| Pickrell, J. K., Patterson, N., Berthold, F., Barbieri, C., Gerlach, L., Gueldemann, T., Kure, B., Mpoloka, S. W., Nakagawa, H., Naumann, C., Lipson, M., Loh, P.-R., Lachance, J., Mountain, J., Bustamante, C. D., Berger, B., Tishkoff, S. A., Henn, B. M., Stoneking, M., Reich, D., & Pakendorf, B. (2012). The genetic prehistory of southern Africa. Nature Communications,3: 1143. Open Access DOI BibTeX Endnote | |
| Prüfer, K., Munch, K., Hellmann, I., Akagi, K., Miller, J. R., Walenz, B., Koren, S., Sutton, G., Kodira, C., Winer, R., Knight, J. R., Mullikin, J. C., Meader, S. J., Ponting, C. P., Lunter, G., Higashino, S., Hobolth, A., Dutheil, J., Karakoç, E., Alkan, C., Sajjadian, S., Catacchio, C. R., Ventura, M., Marques-Bonet, T., Eichler, E. E., André, C., Atencia, R., Mugisha, L., Junhold, J., Patterson, N., Siebauer, M., Good, J. M., Fischer, A., Ptak, S. E., Lachmann, M., Symer, D. E., Mailund, T., Schierup, M. H., Andrés, A. M., Kelso, J., & Pääbo, S. (2012). The bonobo genome compared with the chimpanzee and human genomes. Nature,486(7404), 527-531. Open Access DOI PubMed BibTeX Endnote | |
| Pugach, I. (2012). Demographic inference from patterns of recombination across the genome: Population history of the Australian aboriginals based on genome-wide SNP data. PhD Thesis, Universität, Leipzig. BibTeX Endnote | |
| Quillen, E. E., Bauchet, M., Bigham, A. W., Delgado-Burbano, M. E., Faust, F. X., Klimentidis, Y. C., Mao, X., Stoneking, M., & Shriver, M. D. (2012). OPRM1 and EGFR contribute to skin pigmentation differences between Indigenous Americans and Europeans. Human Genetics,131(7), 1073-1080. DOI BibTeX Endnote | |
| Ratikainen, I. I., Sødal, L. R. H., Kazem, A., & Wright, J. (2012). Private and public information use strategies by foraging groups of wild Siberian jays. Animal Behaviour,83(5), 1243-1251. DOI BibTeX Endnote | |
| Rost, B., Gaasterland, T., Lengauer, T., Linial, M., Markel, S., McKay, B. M., Schneider, R., Horton, P., & Kelso, J. (2012). Paving the future: finding suitable ISMB venues. Bioinformatics,28(19), 2556-2559. Open Access DOI BibTeX Endnote | |
| Sankararaman, S., Patterson, N., Li, H., Pääbo, S., & Reich, D. (2012). The date of interbreeding between Neandertals and modern humans. PLoS Genetics,8(10): e1002947. Open Access DOI BibTeX Endnote | |
| Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012). Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One,7(3): e34131. Open Access DOI BibTeX Endnote | |
| Schmidt, M., Horn, S., Flieger, K., Ehlers, K., Wilhelm, C., & Schnetter, R. (2012). Synchroma pusillum sp. nov. and other New Algal Isolates with Chloroplast Complexes Confirm the Synchromophyceae (Ochrophyta) as a Widely Distributed Group of Amoeboid Algae. Protist,163(4), 544-559. DOI BibTeX Endnote | |
| Stoneking, M. (2012). Genetic evidence concerning the origins and dispersals of modern humans. In M. H. Crawford, & B. C. Campbell ( BibTeX Endnote | |
| Theunert, C., Tang, K., Lachmann, M., Hu, S., & Stoneking, M. (2012). Inferring the history of population size change from genome-wide SNP data. Molecular Biology and Evolution,29(2), 3653-3667. DOI BibTeX Endnote | |
| Weng, K., Hu, H., Xu, G. A., Khaitovich, P., & Somel, M. (2012). Mechanisms of Dietary Response in Mice and Primates: A Role for EGR1 in Regulating the Reaction to Human-Specific Nutritional Content. PLoS One,7(8): e43915. Open Access DOI BibTeX Endnote | |
| White, L., & Castellano, S. (2012). Evolutionary basis for the use of selenocysteine. In D. L. Hatfield, M. J. Berry, & V. N. Gladyshev ( DOI BibTeX Endnote | |
| Xu, S., & Stoneking, M. (2012). Reply to Denham and Donohue: Asian-Papuan genetic admixture is in excellent agreement with Austronesian dispersal in eastern Indonesia. Proceedings of the National Academy of Sciences of the United States of America,109(39): E2578. DOI BibTeX Endnote | |
| Xu, S., Pugach, I., Stoneking, M., Kayser, M., Jina, L., & The HUGO Pan-Asian SNP Consortium (2012). Genetic dating indicates that the Asian–Papuan admixture through Eastern Indonesia corresponds to the Austronesian expansion. Proceedings of the National Academy of Sciences of the United States of America,109(12), 4574-4579. DOI BibTeX Endnote | |
| Yuan, Y., Chen, Y.-P.-P., Boyd-Kirkup, J., Khaitovich, P., & Somel, M. (2012). Accelerated aging-related transcriptome changes in the female prefrontal cortex. Aging Cell,11(5), 894-901. Open Access DOI BibTeX Endnote |
