Stephan Schiffels

Wang, K., Prüfer, K., Krause-Kyora, B., Childebayeva, A., Schuenemann, V. J., Coia, V., Maixner, F., Zink, A., Schiffels, S., & Krause, J. (2023). High-coverage genome of the Tyrolean Iceman reveals unusually high Anatolian farmer ancestry (advance online). Cell Genomics, 100377.
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Gibbon, V. E., Feris, L., Gretzinger, J., Smith, K., Hall, S., Penn, N., Mutsvangwa, T. E. M., Heale, M., Finaughty, D. A., Karanja, Y. W., Esterhuyse, J., Kotze, D., Barnes, N., Gunston, G., May, J., Krause, J., Wilkinson, C. M., Schiffels, S., Februarie, D., Alves, S., & Sealy, J. C. (2023). Confronting historical legacies of biological anthropology in South Africa—Restitution, redress and community-centered science: The Sutherland Nine. PLoS One, 18: e0284785.
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Gibbon, V. E., Feris, L., Gretzinger, J., Smith, K., Hall, S., Penn, N., Mutsvangwa, T. E., Wilkinson, C. M., Schiffels, S., Alves, S., & Sealy, J. C. (2023). Restitution with community-centered science in South Africa: Sutherland Nine. American Journal of Biological Anthropology, 180(S75), 62.
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Schmid, C., & Schiffels, S. (2023). Estimating human mobility in Holocene Western Eurasia with large-scale ancient genomic data. Proceedings of the National Academy of Sciences, 120(9): e2218375120.
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Wang, K., Bleasdale, M., Le Moyne, C., Freund, C., Krause, J., Boivin, N., & Schiffels, S. (2022). 4000-year-old hair from the Middle Nile highlights unusual ancient DNA degradation pattern and a potential source of early eastern Africa pastoralists. Scientific Reports, 12: 20939.
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Genome-wide data from medieval German Jews show that the Ashkenazi founder event pre-dated the 14th century.
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Gower, G., Ragsdale, A. P., Bisschop, G., Gutenkunst, R. N., Hartfield, M., Noskova, E., Schiffels, S., Struck, T. J., Kelleher, J., & Thornton, K. R. (2022). Demes: a standard format for demographic models. Genetics, 222(3): iyac131.
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Gretzinger, J., & Schiffels, S. (2022). Transformations in early medieval England: the perspective from population genetics. Current Anthropology: the UK's best-selling archaeology magazine, (392).
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Gretzinger, J., & Schiffels, S. (2022). A glimpse into darkness: Population genetics of the European Middle Ages. In New Narratives for the First Millennium AD? Alte und neue Perspektiven der archäologischen Forschung zum 1. Jahrtausend n. Chr. (pp. 283-297). Wendeburg: Uwe Krebs.
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Gretzinger, J., Sayer, D., Justeau, P., Altena, E., Pala, M., Dulias, K., Edwards, C. J., Jodoin, S., Lacher, L., Sabin, S., Vågene, Å. J., Haak, W., Ebenesersdóttir, S. S., Moore, K. H. S., Radzeviciute, R., Schmidt, K., Brace, S., Bager, M. A., Patterson, N., Papac, L., Broomandkhoshbacht, N., Callan, K., Harney, É., Iliev, L., Lawson, A. M., Michel, M., Stewardson, K., Zalzala, F., Rohland, N., Kappelhoff-Beckmann, S., Both, F., Winger, D., Neumann, D., Saalow, L., Krabath, S., Beckett, S., Van Twest, M., Faulkner, N., Read, C., Barton, T., Caruth, J., Hines, J., Krause-Kyora, B., Warnke, U., Schuenemann, V. J., Barnes, I., Dahlström, H., Clausen, J. J., Richardson, A., Popescu, E., Dodwell, N., Ladd, S., Phillips, T., Mortimer, R., Sayer, F., Swales, D., Stewart, A., Powlesland, D., Kenyon, R., Ladle, L., Peek, C., Grefen-Peters, S., Ponce, P., Daniels, R., Spall, C., Woolcock, J., Jones, A. M., Roberts, A. V., Symmons, R., Rawden, A. C., Cooper, A., Bos, K. I., Booth, T., Schroeder, H., Thomas, M. G., Helgason, A., Richards, M. B., Reich, D., Krause, J., & Schiffels, S. (2022). The Anglo-Saxon migration and the formation of the early English gene pool. Nature, 610, 112-119.
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Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46.
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Kocher, A., Papac, L., Barquera, R., Key, F. M., Spyrou, M. A., Hübler, R., Rohrlach, A. B., Aron, F., Stahl, R., Wissgott, A., van Bömmel, F., Pfefferkorn, M., Mittnik, A., Villalba-Mouco, V., Neumann, G. U., Rivollat, M., Loosdrecht, M. S. v. d., Majander, K., Tukhbatova, R. I., Musralina, L., Ghalichi, A., Penske, S., Sabin, S., Michel, M., Gretzinger, J., Nelson, E. A., Ferraz, T., Nägele, K., Parker, C. E., Keller, M., Guevara, E., Feldman, M., Eisenmann, S., Skourtanioti, E., Giffin, K., Gnecchi-Ruscone, G. A., Friederich, S., Schimmenti, V., Khartanovich, V., Karapetian, M. K., Chaplygin, M. S., Kufterin, V. V., Khokhlov, A. A., Chizhevsky, A. A., Stashenkov, D. A., Kochkina, A. F., Tejedor-Rodríguez, C., de Lagrán, Í.-G.-M., Arcusa-Magallón, H., Garrido-Pena, R., Royo-Guillén, J. I., Novácek, J., Rottier, S., Kacki, S., Saintot, S., Kaverzneva, E., Belinskiy, A. B., Velemínský, P., Limburský, P., Kostka, M., Loe, L., Popescu, E., Clarke, R., Lyons, A., Mortimer, R., Sajantila, A., de Armas, Y. C., Godoy, S. T. H., Hernández-Zaragoza, D. I., Pearson, J., Binder, D., Lefranc, P., Kantorovich, A. R., Maslov, V. E., Lai, L., Zoledziewska, M., Beckett, J. F., Langová, M., Danielisová, A., Ingman, T., Atiénzar, G. G., de Ibáñez, M. P. M., Romero, A., Sperduti, A., Beckett, S., Salter, S. J., Zilivinskaya, E. D., Vasilev, D. V., von Heyking, K., Burger, R. L., Salazar, L. C., Amkreutz, L., Navruzbekov, M., Rosenstock, E., Alonso-Fernández, C., Slavchev, V., Kalmykov, A. A., Atabiev, B. C., Batieva, E., Calmet, M. A., Llamas, B., Schultz, M., Krauß, R., Jiménez-Echevarría, J., Francken, M., Shnaider, S., de Knijff, P., Altena, E., de Vijver, K. V., Fehren-Schmitz, L., Tung, T. A., Lösch, S., Dobrovolskaya, M., Makarov, N., Read, C., Twest, M. V., Sagona, C., Ramsl, P. C., Akar, M., Yener, K. A., Ballestero, E. C., Cucca, F., Mazzarello, V., Utrilla, P., Rademaker, K., Fernández-Domínguez, E., Baird, D., Semal, P., Márquez-Morfín, L., Roksandic, M., Steiner, H., Salazar-García, D. C., Shishlina, N., Erdal, Y. S., Hallgren, F., Boyadzhiev, Y., Boyadzhiev, K., Küßner, M., Sayer, D., Onkamo, P., Skeates, R., Rojo-Guerra, M., Buzhilova, A., Khussainova, E., Djansugurova, L. B., Beisenov, A. Z., Samashev, Z., Massy, K., Mannino, M., Moiseyev, V., Mannermaa, K., Balanovsky, O., Deguilloux, M.-F., Reinhold, S., Hansen, S., Kitov, E. P., Dobeš, M., Ernée, M., Meller, H., Alt, K. W., Prüfer, K., Warinner, C., Schiffels, S., Stockhammer, P. W., Bos, K., Posth, C., Herbig, A., Haak, W., Krause, J., & Kühnert, D. (2021). Ten millennia of hepatitis B virus evolution. Science, 374(6564), 182-188.
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Papac, L., Ernée, M., Dobeš, M., Langová, M., Rohrlach, A. B., Aron, F., Neumann, G. U., Spyrou, M. A., Rohland, N., Velemínský, P., Kuna, M., Brzobohatá, H., Culleton, B., Daněček, D., Danielisová, A., Dobisíková, M., Hložek, J., Kennett, D. J., Klementová, J., Kostka, M., Krištuf, P., Kuchařík, M., Hlavová, J. K., Limburský, P., Malyková, D., Mattiello, L., Pecinovská, M., Petriščáková, K., Průchová, E., Stránská, P., Smejtek, L., Špaček, J., Šumberová, R., Švejcar, O., Trefný, M., Vávra, M., Kolář, J., Heyd, V., Krause, J., Pinhasi, R., Reich, D., Schiffels, S., & Haak, W. (2021). Dynamic changes in genomic and social structures in third millennium BCE central Europe. Science Advances, 7(35): eabi6941.
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Freilich, S., Ringbauer, H., Los, D., Novak, M., Tresić Pavičić, D., Schiffels, S., & Pinhasi, R. (2021). Reconstructing genetic histories and social organisation in Neolithic and Bronze Age Croatia. Scientific Reports, 11: 16729.
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Schmid, C., & Schiffels, S. (2021). bleiglas: An R package for interpolation and visualisation of spatiotemporal data with 3D tessellation. The Journal of Open Source Software, 6(60): 3092.
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Bleasdale, M., Richter, K. K., Janzen, A., Brown, S., Scott, A., Zech, J., Wilkin, S., Wang, K., Schiffels, S., Desideri, J., Besse, M., Reinold, J., Saad, M., Babiker, H., Power, R. C., Ndiema, E., Ogola, C., Manthi, F. K., Zahir, M., Petraglia, M. D., Trachsel, C., Nanni, P., Grossmann, J., Hendy, J., Crowther, A., Roberts, P., Goldstein, S. T., & Boivin, N. L. (2021). Ancient proteins provide evidence of dairy consumption in eastern Africa. Nature Communications, 12: 632.
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Fründt, S., Schiffels, S., & Winkelmann, A. (2021). Ways of analysing human remains and the benefits for scientific research. In German Museum Association (Ed.), Guidelines: care of human remains in museum and collections (pp. 75-87). Berlin: Deutscher Museumsbund e. V.
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Wang, C.-C., Yeh, H.-Y., Popov, A. N., Zhang, H.-Q., Matsumura, H., Sirak, K., Cheronet, O., Kovalev, A., Rohland, N., Kim, A. M., Mallick, S., Bernardos, R., Tumen, D., Zhao, J., Liu, Y.-C., Liu, J.-Y., Mah, M., Wang, K., Zhang, Z., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Carlson, K. S. D., Culleton, B. J., Eccles, L., Freilich, S., Keating, D., Lawson, A. M., Mandl, K., Michel, M., Oppenheimer, J., Özdoğan, K. T., Stewardson, K., Wen, S., Yan, S., Zalzala, F., Chuang, R., Huang, C.-J., Looh, H., Shiung, C.-C., Nikitin, Y. G., Tabarev, A. V., Tishkin, A. A., Lin, S., Sun, Z.-Y., Wu, X.-M., Yang, T.-L., Hu, X., Chen, L., Du, H., Bayarsaikhan, J., Mijiddorj, E., Erdenebaatar, D., Iderkhangai, T.-O., Myagmar, E., Kanzawa-Kiriyama, H., Nishino, M., Shinoda, K.-i., Shubina, O. A., Guo, J., Cai, W., Deng, Q., Kang, L., Li, D., Li, D., Lin, R., Nini, Shrestha, R., Wang, L.-X., Wei, L., Xie, G., Yao, H., Zhang, M., He, G., Yang, X., Hu, R., Robbeets, M., Schiffels, S., Kennett, D. J., Jin, L., Li, H., Krause, J., Pinhasi, R., & Reich, D. (2021). Genomic insights into the formation of human populations in East Asia. Nature, 591, 413-419.
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Jeong, C., Wang, K., Wilkin, S., Taylor, W. T. T., Miller, B. K., Bemmann, J. H., Stahl, R., Chiovelli, C., Knolle, F., Ulziibayar, S., Khatanbaatar, D., Erdenebaatar, D., Erdenebat, U., Ochir, A., Ankhsanaa, G., Vanchigdash, C., Ochir, B., Munkhbayar, C., Tumen, D., Kovalev, A., Kradin, N., Bazarov, B. A., Miyagashev, D. A., Konovalov, P. B., Zhambaltarova, E., Ventresca Miller, A. R., Haak, W., Schiffels, S., Krause, J., Boivin, N. L., Erdene, M., Hendy, J., & Warinner, C. G. (2020). A dynamic 6,000-year genetic history of Eurasia’s eastern steppe. Cell, 183(4), 890-904.e29.
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Schiffels, S. (2020). Review and assessment of performance of genomic inference methods based on the sequentially markovian coalescent. Peer Community in Evolutionary Biology, 100115.
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Wang, K., Goldstein, S. T., Bleasdale, M., Clist, B., Bostoen, K., Bakwa-Lufu, P., Buck, L. T., Crowther, A., Dème, A., McIntosh, R. J., Mercader, J., Ogola, C., Power, R. C., Sawchuk, E. A., Robertshaw, P., Wilmsen, E. N., Petraglia, M. D., Ndiema, E., Manthi, F. K., Krause, J., Roberts, P., Boivin, N. L., & Schiffels, S. (2020). Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa. Science Advances, 6(24): eaaz0183.
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Rivollat, M., Jeong, C., Schiffels, S., Kücükkalıpcı, İ., Pemonge, M.-H., Rohrlach, A. B., Alt, K. W., Binder, D., Friederich, S., Ghesquière, E., Gronenborn, D., Laporte, L., Lefranc, P., Meller, H., Réveillas, H., Rosenstock, E., Rottier, S., Scarre, C., Soler, L., Wahl, J., Krause, J., Deguilloux, M.-F., & Haak, W. (2020). Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers. Science Advances, 6(22): eaaz5344.
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Furtwängler, A., Rohrlach, A. B., Lamnidis, T. C., Papac, L., Neumann, G., Siebke, I., Reiter, E., Steuri, N., Hald, J., Denaire, A., Schnitzler, B., Wahl, J., Ramstein, M., Schuenemann, V. J., Stockhammer, P. W., Hafner, A., Lösch, S., Haak, W., Schiffels, S., & Krause, J. (2020). Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature Communications, 11: 1915.
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Loosdrecht, M. S. v. d., Mannino, M. A., Talamo, S., Villalba-Mouco, V., Posth, C., Aron, F., Brandt, G., Burri, M., Freund, C., Radzeviciute, R., Stahl, R., Wissgott, A., Klausnitzer, L., Nagel, S., Meyer, M., Tagliacozzo, A., Piperno, M., Tusa, S., Collina, C., Schimmenti, V., Salvo, R. D., Prüfer, K., Hublin, J.-J., Schiffels, S., Jeong, C., Haak, W., & Krause, J. (2020). Genomic and dietary transitions during the Mesolithic and Early Neolithic in Sicily. bioRxiv, 986158.
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Wang, K., Mathieson, I., O'Connell, J., & Schiffels, S. (2020). Tracking human population structure through time from whole genome sequences. PLoS Genetics, 16(3): e1008552, pp. 1-24.
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Gretzinger, J., & Schiffels, S. (2020). Report on genetic analyses of iron age samples from Slovakia. In Diversity of male identities in early and middle La Tène period cemetries in central Europe (pp. 215-219). Nitra: Archeologický ústav SAV.
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Schiffels, S., & Wang, K. (2020). MSMC and MSMC2: the multiple sequentially markovian coalescent. In J. Y. Dutheil (Ed.), Statistical population genomics (pp. 147-165). New York, NY: Humana.
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Mittnik, A., Massy, K., Knipper, C., Wittenborn, F., Pfrengle, S., Carlichi-Witjes, N., Deeg, H., Furtwängler, A., Harbeck, M., von Heyking, K., Kociumaka, C., Kucukkalipci, I., Lindauer, S., Metz, S., Staskiewicz, A., Thiel, A., Wahl, J., Haak, W., Pernicka, E., Schiffels, S., Stockhammer, P. W., & Krause, J. (2019). Kinship-based social inequality in Bronze Age Europe. Science, 366(6466): aax6219, pp. 731-734.
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Flegontov, P., Altınışık, N. E., Changmai, P., Rohland, N., Mallick, S., Adamski, N., Bolnick, D. A., Broomandkhoshbacht, N., Candilio, F., Culleton, B. J., Flegontova, O., Friesen, T. M., Jeong, C., Harper, T. K., Keating, D., Kennett, D. J., Kim, A. M., Lamnidis, T. C., Lawson, A. M., Olalde, I., Oppenheimer, J., Potter, B. A., Raff, J., Sattler, R. A., Skoglund, P., Stewardson, K., Vajda, E. J., Vasilyev, S., Veselovskaya, E., O’Rourke, M. G. H. D. H., Krause, J., Pinhasi, R., & Schiffels, S. (2019). Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America. Nature, 570, 236-240.
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Jeong, C., Balanovsky, O., Lukianova, E., Kahbatkyzy, N., Flegontov, P., Zaporozhchenko, V., Immel, A., Wang, C.-C., Ixan, O., Khussainova, E., Bekmanov, B., Zaibert, V., Lavryashina, M., Pocheshkhova, E., Yusupov, Y., Agdzhoyan, A., Koshel, S., Bukin, A., Nymadawa, P., Turdikulova, S., Dalimova, D., Churnosov, M., Skhalyakho, R., Daragan, D., Bogunov, Y., Bogunova, A., Shtrunov, A., Dubova, N., Zhabagin, M., Yepiskoposyan, L., Churakov, V., Pislegin, N., Damba, L., Saroyants, L., Dibirova, K., Atramentova, L., Utevska, O., Idrisov, E., Kamenshchikova, E., Evseeva, I., Metspalu, M., Outram, A. K., Robbeets, M., Djansugurova, L., Balanovska, E., Schiffels, S., Haak, W., Reich, D., & Krause, J. (2019). The genetic history of admixture across inner Eurasia. Nature Ecology & Evolution, 3, 966-976.
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Villalba-Mouco, V., Loosdrecht, M. S. v. d., Posth, C., Mora, R., Martínez-Moreno, J., Rojo-Guerra, M., Salazar-García, D. C., Royo-Guillén, J. I., Kunst, M., Rougier, H., Crevecoeur, I., Arcusa-Magallón, H., Tejedor-Rodríguez, C., de Lagrán, I.-G.-M., Garrido-Pena, R., Alt, K. W., Jeong, C., Schiffels, S., Utrilla, P., Krause, J., & Haak, W. (2019). Survival of late pleistocene hunter-gatherer ancestry in the Iberian Peninsula. Current Biology, 29(7), 1169-1177.
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Wang, C.-C., Reinhold, S., Kalmykov, A., Wissgott, A., Brandt, G., Jeong, C., Cheronet, O., Ferry, M., Harney, E., Keating, D., Mallick, S., Rohland, N., Stewardson, K., Kantorovich, A. R., Maslov, V. E., Petrenko, V. G., Erlikh, V. R., Atabiev, B. C., Magomedov, R. G., Kohl, P. L., Alt, K. W., Pichler, S. L., Gerling, C., Meller, H., Vardanyan, B., Yeganyan, L., Rezepkin, A. D., Mariaschk, D., Berezina, N., Gresky, J., Fuchs, K., Knipper, C., Schiffels, S., Balanovska, E., Balanovsky, O., Mathieson, I., Higham, T., Berezin, Y. B., Buzhilova, A., Trifonov, V., Pinhasi, R., Belinskij, A. B., Reich, D., Hansen, S., Krause, J., & Haak, W. (2019). Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions. Nature Communications, 10(1): 590.
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Flegontov, P., Altinisik, N. E., Changmai, P., Rohland, N., Mallick, S., Bolnick, D. A., Candilio, F., Flegontova, O., Jeong, C., Harper, T. K., Keating, D., Kennett, D. J., Kim, A. M., Lamnidis, T. C., Olalde, I., Raff, J., Sattler, R. A., Skoglund, P., Vajda, E. J., Vasilyev, S., Veselovskaya, E., Hayes, M. G., O’Rourke, D. H., Pinhasi, R., Krause, J., Reich, D., & Schiffels, S. (2019). Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America. Nature, 570, 236-240.
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Gurdasani, D., Carstensen, T., Fatumo, S., Chen, G., Franklin, C. S., Prado-Martinez, J., Bouman, H., Abascal, F., Haber, M., Tachmazidou, I., Mathieson, I., Ekoru, K., DeGorter, M. K., Nsubuga, R. N., Finan, C., Wheeler, E., Chen, L., Cooper, D. N., Schiffels, S., Chen, Y., Ritchie, G. R., Pollard, M. O., Fortune, M. D., Mentzer, A. J., Garrison, E., Bergstrom, A., Hatzikotoulas, K., Adeyemo, A., Doumatey, A., Elding, H., Wain, L. V., Ehret, G., Auer, P. L., Kooperberg, C. L., Reiner, A. P., Franceschini, N., Maher, D. P., Montgomery, S. B., Kadie, C., Widmer, C., Xue, Y., Seeley, J., Asiki, G., Kamali, A., Young, E. H., Pomilla, C., Soranzo, N., Zeggini, E., Pirie, F., Morris, A. P., Heckerman, D., Tyler-Smith, C., Motala, A., Rotimi, C., Kaleebu, P., Barroso, I., & Sandhu, M. S. (2019). Uganda genome resource enables insights into population history and genomic discovery in Africa. Cell, 179(4), 984-1002.e36.
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Lamnidis, T. C., Majander, K., Jeong, C., Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., Weihmann, A., Sajantila, A., Kelso, J., Pääbo, S., Onkamo, P., Haak, W., Krause, J., & Schiffels, S. (2018). Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature Communications, 9: 5018.
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