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Recent Department Publications

Letzte Aktualisierung: February 22nd, 2024

2024

Mylopotamitaki, D., Weiss, M., Fewlass, H., Zavala, E. I., Rougier, H., Sümer, A., Hajdinjak, M., Smith, G. M., Ruebens, K., Sinet-Mathiot, V., Pederzani, S., Essel, E., Harking, F. S., Xia, H., Hansen, J., Kirchner, A., Lauer, T., Stahlschmidt, M., Hein, M., Talamo, S., Wacker, L., Meller, H., Dietl, H., Orschiedt, J., Olsen, J. V., Zeberg, H., Prüfer, K., Krause, J., Meyer, M., Welker, F., McPherron, S. P., Schüler, T., & Hublin, J.-J. (2024). Homo sapiens reached the higher latitudes of Europe by 45,000 years ago (advance online). Nature.
Open Access    DOI    BibTeX   Endnote   

Pederzani, S., Britton, K., Trost, M., Fewlass, H., Bourgon, N., McCormack, J., Jaouen, K., Dietl, H., Döhle, H.-J., Kirchner, A., Lauer, T., Le Corre, M., McPherron, S. P., Meller, H., Mylopotamitaki, D., Orschiedt, J., Rougier, H., Ruebens, K., Schüler, T., Sinet-Mathiot, V., Smith, G. M., Talamo, S., Tütken, T., Welker, F., Zavala, E. I., Weiss, M., & Hublin, J.-J. (2024). Stable isotopes show Homo sapiens dispersed into cold steppes ~45,000 years ago at Ilsenhöhle in Ranis, Germany. Nature Ecology & Evolution.
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Smith, G. M., Ruebens, K., Zavala, E. I., Sinet-Mathiot, V., Fewlass, H., Pederzani, S., Jaouen, K., Mylopotamitaki, D., Britton, K., Rougier, H., Stahlschmidt, M., Meyer, M., Meller, H., Dietl, H., Orschiedt, J., Krause, J., Schüler, T., McPherron, S. P., Weiss, M., Hublin, J.-J., & Welker, F. (2024). The ecology, subsistence and diet of ~45,000-year-old Homo sapiens at Ilsenhöhle in Ranis, Germany. Nature Ecology & Evolution.
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2023

Ågren, R., Patil, S., Zhou, X., Sahlholm, K., Pääbo, S., & Zeberg, H. (2023). Major genetic risk factors for Dupuytren's disease are inherited from Neandertals. Molecular Biology and Evolution, 40(6): msad130.
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Arias, L., Emlen, N. Q., Norder, S., Julmi, N., Lemus Serrano, M., Chacon, T., Wiegertjes, J., Howard, A., Azevedo, M. C. B. C., Caine, A., Dunn, S., Stoneking, M., & Van Gijn, R. (2023). Interpreting mismatches between linguistic and genetic patterns among speakers of Tanimuka (Eastern Tukanoan) and Yukuna (Arawakan). Interface Focus, 13(1): 20220056.
Open Access    DOI    BibTeX   Endnote   

Bornschein, U., Zeberg, H., Enard, W., Hevers, W., & Pääbo, S. (2023). Functional dissection of two amino acid substitutions unique to the human FOXP2 protein. Scientific Reports, 13(1): 3747.
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Breitfeld, J., Horn, K., Le Duc, D., Velluva, A., Marzi, C., Grallert, H., Friedrich, N., Pietzner, M., Völker, U., Völzke, H., Ahlqvist, E., Aly, D. M., Tuomi, T., Baber, R., Kratzsch, J., Thiery, J., Isermann, B., Loeffler, M., Klöting, N., Blüher, M., Stumvoll, M., Heiker, J. T., Tönjes, A., Scholz, M., & Kovacs, P. (2023). Genetic dissection of serum vaspin highlights its causal role in lipid metabolism. Obesity, 31(11), 2862-2874.
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Bundalian, L., Su, Y.-Y., Chen, S., Velluva, A., Kirstein, A. S., Garten, A., Biskup, S., Battke, F., Lal, D., Heyne, H. O., Platzer, K., Lin, C.-C., Lemke, J. R., & Le Duc, D. (2023). Epilepsies of presumed genetic etiology show enrichment of rare variants that occur in the general population. The American Journal of Human Genetics, 110, 1110-1122.
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Cahan, P., & Treutlein, B. (2023). A conversation with ChatGPT on the role of computational systems biology in stem cell research [Editorial]. Stem Cell Reports, 18, 1-2.
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Carlhoff, S., Kutanan, W., Rohrlach, A. B., Posth, C., Stoneking, M., Nägele, K., Shoocongdej, R., & Krause, J. (2023). Genomic portrait and relatedness patterns of the Iron Age Log Coffin culture in northwestern Thailand. Nature Communications, 14(1): 8527.
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Cauret, C. M. S., Jordan, D. C., Kukoly, L. M., Burton, S. R., Anele, E. U., Kwiecien, J. M., Gansauge, M.-T., Senthillmohan, S., Greenbaum, E., Meyer, M., Horb, M. E., & Evans, B. J. (2023). Functional dissection and assembly of a small, newly evolved, W chromosome-specific genomic region of the African clawed frog Xenopus laevis. PLoS Genetics, 19(10): e1010990.
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Emlen, N. Q., Arias, L., & van Gijn, R. (2023). Multidisciplinary approaches to the Amazonian past: Introduction to the theme issue. Interface Focus, 13(1): 2022.0068.
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Essel, E. (2023). Releasing secrets bound to ancient remains with modern DNA extraction techniques: An interview with Elena Essel. BioTechniques, 75(2), 42-46.
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Essel, E., Zavala, E. I., Schulz-Kornas, E., Kozlikin, M. B., Fewlass, H., Vernot, B., Shunkov, M. V., Derevianko, A. P., Douka, K., Barnes, I., Soulier, M.-C., Schmidt, A., Szymanski, M., Tsanova, T., Sirakov, N., Endarova, E., McPherron, S. P., Hublin, J.-J., Kelso, J., Pääbo, S., Hajdinjak, M., Soressi, M., & Meyer, M. (2023). Ancient human DNA recovered from a Palaeolithic pendant. Nature, 618, 328-332.
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Fewlass, H., Zavala, E. I., Fagault, Y., Tuna, T., Bard, E., Hublin, J.-J., Hajdinjak, M., & Wilczyński, J. (2023). Chronological and genetic analysis of an Upper Palaeolithic female infant burial from Borsuka Cave, Poland. iScience, 26(12): 108283.
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Fleck, J. S., Jansen, S. M. J., Wollny, D., Zenk, F., Seimiya, M., Jain, A., Okamoto, R., Santel, M., He, Z., Camp, J. G., & Treutlein, B. (2023). Inferring and perturbing cell fate regulomes in human brain organoids. Nature, 621, 365-372.
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Fortes-Lima, C. A., Burgarella, C., Hammarén, R., Eriksson, A., Vicente, M., Jolly, C., Semo, A., Gunnink, H., Pacchiarotti, S., Mundeke, L., Matonda, I., Muluwa, J. K., Coutros, P., Nyambe, T. S., Cikomola, J. C., Coetzee, V., de Castro, M., Ebbesen, P., Delanghe, J., Stoneking, M., Barham, L., Lombard, M., Meyer, A., Steyn, M., Malmström, H., Rocha, J., Soodyall, H., Pakendorf, B., Bostoen, K., & Schlebusch, C. M. (2023). The genetic legacy of the expansion of Bantu-speaking peoples in Africa (advance online). Nature.
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Lackner, M., Helmbrecht, N., Pääbo, S., & Riesenberg, S. (2023). Detection of unintended on-target effects in CRISPR genome editing by DNA donors carrying diagnostic substitutions. Nucleic Acids Research, 51(5): gkac1254.
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Lauterbur, M. E., Cavassim, M. I. A., Gladstein, A. L., Gower, G., Pope, N. S., Tsambos, G., Adrion, J., Belsare, S., Biddanda, A., Caudill, V., Cury, J., Echevarria, I., Haller, B. C., Hasan, A. R., Huang, X., Iasi, L. N., Noskova, E., Obsteter, J., Pavinato, V. A. C., Pearson, A., Peede, D., Perez, M. F., Rodrigues, M. F., Smith, C. C., Spence, J. P., Teterina, A., Tittes, S., Unneberg, P., Vazquez, J. M., Waples, R. K., Wohns, A. W., Wong, Y., Baumdicker, F., Cartwright, R. A., Gorjanc, G., Gutenkunst, R. N., Kelleher, J., Kern, A. D., Ragsdale, A. P., Ralph, P. L., Schrider, D. R., & Gronau, I. (2023). Expanding the stdpopsim species catalog, and lessons learned for realistic genome simulations. eLife, 12: RP84874.
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Liu, D., Min-Shan Ko, A., & Stoneking, M. (2023). The genomic diversity of Taiwanese Austronesian groups: Implications for the “Into- and Out-of-Taiwan” models. PNAS Nexus, 2(5): pgad122.
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Louis, M., Korlević, P., Nykänen, M., Archer, F., Berrow, S., Brownlow, A., Lorenzen, E. D., O’Brien, J., Post, K., Racimo, F., Rogan, E., Rosel, P. E., Sinding, M.-H.-S., van der Es, H., Wales, N., Fontaine, M. C., Gaggiotti, O. E., & Foote, A. D. (2023). Ancient dolphin genomes reveal rapid repeated adaptation to coastal waters. Nature Communications, 14: 4020.
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Murat, F., Mbengue, N., Winge, S. B., Trefzer, T., Leushkin, E., Sepp, M., Cardoso-Moreira, M., Schmidt, J., Schneider, C., Mößinger, K., Brüning, T., Lamanna, F., Belles, M. R., Conrad, C., Kondova, I., Bontrop, R., Behr, R., Khaitovich, P., Pääbo, S., Marques-Bonet, T., Grützner, F., Almstrup, K., Schierup, M. H., & Kaessmann, H. (2023). The molecular evolution of spermatogenesis across mammals. Nature, 613, 308-316.
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Oliveira, S., Fehn, A.-M., Amorim, B., Stoneking, M., & Rocha, J. (2023). Genome-wide variation in the Angolan Namib Desert reveals unique pre-Bantu ancestry. Science Advances, 9(38): eadh3822.
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Parker, C. E., Hiss, A. N., Spyrou, M. A., Neumann, G. U., Slavin, P., Nelson, E. A., Nagel, S., Dalidowski, X., Friederich, S., Krause, J., Herbig, A., Haak, W., & Bos, K. I. (2023). 14th century Yersinia pestis genomes support emergence of pestis secunda within Europe. PLoS Pathogens, 19(7): e1011404.
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Penner-Goeke, S., Bothe, M., Rek, N., Kreitmaier, P., Pöhlchen, D., Kühnel, A., Glaser, L. V., Kaya, E., Krontira, A. C., Röh, S., Czamara, D., Ködel, M., Monteserin-Garcia, J., Diener, L., Wölfel, B., Sauer, S., Rummel, C., Riesenberg, S., Arloth-Knauer, J., Ziller, M., Labeur, M., Meijsing, S., & Binder, E. B. (2023). High-throughput screening of glucocorticoid-induced enhancer activity reveals mechanisms of stress-related psychiatric disorders. Proceedings of the National Academy of Sciences, 120: e2305773120.
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Peyrégne, S., Slon, V., & Kelso, J. (2023). More than a decade of genetic research on the Denisovans (advance online). Nature Reviews Genetics.
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Popli, D., Peyrégne, S., & Peter, B. M. (2023). Estimating genetic relatedness from ancient DNA. In H. Meller, J. Krause, W. Haak, & R. Risch (Eds.), Kinship, sex, and biological relatedness: the contribution of archaeogenetics to the understanding of social and biological relations: 15. Mitteldeutscher Archäologentag vom 6. bis 8. Oktober 2022 in Halle (Saale) (pp. 95-99). Halle (Saale): Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt - Landesmuseum für Vorgeschichte.
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Popli, D., Peyrégne, S., & Peter, B. M. (2023). KIN: a method to infer relatedness from low-coverage ancient DNA. Genome Biology, 24: 10.
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Riesenberg, S., Kanis, P., Macak, D., Wollny, D., Düsterhöft, D., Kowalewski, J., Helmbrecht, N., Maricic, T., & Pääbo, S. (2023). Efficient high-precision homology-directed repair-dependent genome editing by HDRobust. Nature Methods, 20, 1388-1399.
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Safrastyan, A., zu Siederdissen, C. H., & Wollny, D. (2023). Decoding cell-type contributions to the cfRNA transcriptomic landscape of liver cancer. Human Genomics, 17(1): 90.
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Soressi, M., & Hajdinjak, M. (2023). Ancient woman’s DNA recovered from a 20,000-year-old pendant. Nature, 618, 328-332.
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Stoneking, M., Arias, L., Liu, D., Oliveira, S., Pugach, I., & Rodriguez, J. (2023). Genomic perspectives on human dispersals during the Holocene. Proceedings of the National Academy of Sciences, 120(4): e22094751.
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Swali, P., Schulting, R., Gilardet, A., Kelly, M., Anastasiadou, K., Glocke, I., McCabe, J., Williams, M., Audsley, T., Loe, L., Fernández-Crespo, T., Ordoño, J., Walker, D., Clare, T., Cook, G., Hodkinson, I., Simpson, M., Read, S., Davy, T., Silva, M., Hajdinjak, M., Bergström, A., Booth, T., & Skoglund, P. (2023). Yersinia pestis genomes reveal plague in Britain 4000 years ago. Nature Communications, 14: 2930.
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The COVID-19 Host Genetics Initiative, including authors, Zeberg, H., & Maricic, T. (2023). A second update on mapping the human genetic architecture of COVID-19. Nature, 621, E7-E26.
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Tkaczynski, P. J., Mafessoni, F., Girard-Buttoz, C., Samuni, L., Ackermann, C. Y., Fedurek, P., Gomes, C., Hobaiter, C., Löhrich, T., Manin, V., Preis, A., Valé, P. D., Wessling, E. G., Wittiger, L., Zommers, Z., Zuberbuehler, K., Vigilant, L., Deschner, T., Wittig, R. M., & Crockford, C. (2023). Shared community effects and the non-genetic maternal environment shape cortisol levels in wild chimpanzees. Communications Biology, 6(1): 565.
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Van Gijn, R., Norder, S., Arias, L., Emlen, N. Q., Azevedo, M. C. B. C., Caine, A., Dunn, S., Howard, A., Julmi, N., Krasnoukhova, O., Stoneking, M., & Wiegertjes, J. (2023). The social lives of isolates (and small language families): The case of the Northwest Amazon. Interface Focus, 13(1).
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Wang, K., Yu, H., Radzeviciute, R., Kiryushin, Y. F., Tishkin, A. A., Frolov, Y. V., Stepanova, N. F., Kiryushin, K. Y., Kungurov, A. L., Shnaider, S. V., Tur, S. S., Tiunov, M. P., Zubova, A. V., Pevzner, M., Karimov, T., Buzhilova, A., Slon, V., Jeong, C., Krause, J., & Posth, C. (2023). Middle Holocene Siberian genomes reveal highly connected gene pools throughout North Asia. Current Biology, 33(3), 423-433, e1-e5.
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Westerich, K. J., Reinecke, S., Emich, J., Wyrwoll, M. J., Stallmeyer, B., Meyer, M., Oud, M. S., Fietz, D., Pilatz, A., Kliesch, S., Reichman-Fried, M., Tarbashevich, K., Limon, T., Stehling, M., Friedrich, C., Tüttelmann, F., & Raz, E. (2023). Linking human Dead end 1 (DND1) variants to male infertility employing zebrafish embryos. Human Reproduction, 38(4): dead031, pp. 655-670.
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Woravatin, W., Stoneking, M., Srikummool, M., Kampuansai, J., Arias, L., & Kutanan, W. (2023). South Asian maternal and paternal lineages in southern Thailand and the role of sex-biased admixture. PLoS One, 18: e0291547.
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Yoshiji, S., Butler-Laporte, G., Lu, T., Willett, J. D. S., Su, C.-Y., Nakanishi, T., Morrison, D. R., Chen, Y., Liang, K., Hultström, M., Ilboudo, Y., Afrasiabi, Z., Lan, S., Duggan, N., DeLuca, C., Vaezi, M., Tselios, C., Xue, X., Bouab, M., Shi, F., Laurent, L., Münter, H. M., Afilalo, M., Afilalo, J., Mooser, V., Timpson, N. J., Zeberg, H., Zhou, S., Forgetta, V., Farjoun, Y., & Richards, J. B. (2023). Proteome-wide Mendelian randomization implicates nephronectin as an actionable mediator of the effect of obesity on COVID-19 severity. Nature Metabolism, 5, 248-264.
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2022

Alva, O., Leroy, A., Heiske, M., Pereda-Loth, V., Tisseyre, L., Boland, A., Deleuze, J.-F., Rocha, J., Schlebusch, C., Fortes-Lima, C., Stoneking, M., Radimilahy, C., Rakotoarisoa, J.-A., Letellier, T., & Pierron, D. (2022). The loss of biodiversity in Madagascar is contemporaneous with major demographic events. Current Biology, 32, 4997-5007, e1-e5.
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Barth, L. A. G., Nebe, M., Kalwa, H., Velluva, A., Kehr, S., Kolbig, F., Prabutzki, P., Kiess, W., Le Duc, D., Garten, A., & Kirstein, A. S. (2022). Phospholipid Scramblase 4 (PLSCR4) Regulates Adipocyte Differentiation via PIP3-Mediated AKT Activation. International Journal of Molecular Sciences, 23(17): 9787.
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Brown, S., Massilani, D., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Stoessel, A., Jope-Street, B., Meyer, M., Kelso, J., Pääbo, S., Higham, T., & Douka, K. (2022). The earliest Denisovans and their cultural adaptation. Nature Ecology & Evolution, 6, 28-35.
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Coppo, L., Mishra, P., Siefert, N., Holmgren, A., Pääbo, S., & Zeberg, H. (2022). A substitution in the glutathione reductase lowers electron leakage and inflammation in modern humans. Science Advances, 8(1): eabm1148.
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COVID-19 Genetics Initiative, including authors, Zeberg, H., & Maricic, T. (2022). A first update on mapping the human genetic architecture of COVID-19. Nature, 608, E1-E10.
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Cruz, R., Diz-de Almeida, S., López de Heredia, M., Quintela, I., Ceballos, F. C., Pita, G., Lorenzo-Salazar, J. M., González-Montelongo, R., Gago-Domínguez, M., Sevilla Porras, M., Tenorio Castaño, J. A., Nevado, J., Aguado, J. M., Aguilar, C., Aguilera-Albesa, S., Almadana, V., Almoguera, B., Alvarez, N., Andreu-Bernabeu, Á., Arana-Arri, E., Arango, C., Arranz, M. J., Artiga, M.-J., Baptista-Rosas, R. C., Barreda-Sánchez, M., Belhassen-Garcia, M., Bezerra, J. F., Bezerra, M. A. C., Boix-Palop, L., Brion, M., Brugada, R., Bustos, M., Calderón, E. J., Carbonell, C., Castano, L., Castelao, J. E., Conde-Vicente, R., Cordero-Lorenzana, M. L., Cortes-Sanchez, J. L., Corton, M., Darnaude, M. T., De Martino-Rodríguez, A., del Campo-Pérez, V., Diaz de Bustamante, A., Domínguez-Garrido, E., Luchessi, A. D., Eiros, R., Estigarribia Sanabria, G. M., Carmen Fariñas, M., Fernández-Robelo, U., Fernández-Rodríguez, A., Fernández-Villa, T., Gil-Fournier, B., Gómez-Arrue, J., González Álvarez, B., Gonzalez Bernaldo de Quirós, F., González-Peñas, J., Gutiérrez-Bautista, J. F., Herrero, M. J., Herrero-Gonzalez, A., Jimenez-Sousa, M. A., Lattig, M. C., Liger Borja, A., Lopez-Rodriguez, R., Mancebo, E., Martín-López, C., Martín, V., Martinez-Nieto, O., Martinez-Lopez, I., Martinez-Resendez, M. F., Martinez-Perez, A., Mazzeu, J. F., Merayo Macías, E., Minguez, P., Moreno Cuerda, V., Silbiger, V. N., Oliveira, S. F., Ortega-Paino, E., Parellada, M., Paz-Artal, E., Santos, N. P. C., Pérez-Matute, P., Perez, P., Pérez-Tomás, M. E., Perucho, T., Pinsach-Abuin, M. L., Pompa-Mera, E. N., Porras-Hurtado, G. L., Pujol, A., Ramiro León, S., Resino, S., Fernandes, M. R., Rodríguez-Ruiz, E., Rodriguez-Artalejo, F., Rodriguez-Garcia, J. A., Ruiz Cabello, F., Ruiz-Hornillos, J., Ryan, P., Soria, J. M., Souto, J. C., Tamayo, E., Tamayo-Velasco, A., Taracido-Fernandez, J. C., Teper, A., Torres-Tobar, L., Urioste, M., Valencia-Ramos, J., Yáñez, Z., Zarate, R., Nakanishi, T., Pigazzini, S., Degenhardt, F., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Palom, A., Ellinghaus, D., Martínez-Bueno, M., Rolker, S., Amitrano, S., Roade, L., Fava, F., Spinner, C. D., Prati, D., Bernardo, D., Garcia, F., Darcis, G., Fernández-Cadenas, I., Holter, J. C., Banales, J. M., Frithiof, R., Duga, S., Asselta, R., Pereira, A. C., Romero-Gómez, M., Nafría-Jiménez, B., Hov, J. R., Migeotte, I., Renieri, A., Planas, A. M., Ludwig, K. U., Buti, M., Rahmouni, S., Alarcón-Riquelme, M. E., Schulte, E. C., Franke, A., Karlsen, T. H., Valenti, L., Zeberg, H., Richards, B., Ganna, A., Boada, M., de Rojas, I., Ruiz, A., Sánchez-Juan, P., Real, L. M., SCOURGE Cohort Group, HOSTAGE Cohort Group, GRA@CE Cohort Group, Guillen-Navarro, E., Ayuso, C., González-Neira, A., Riancho, J. A., Rojas-Martinez, A., Flores, C., Lapunzina, P., & Carracedo, A. (2022). Novel genes and sex differences in COVID-19 severity. Human Molecular Genetics, 31(22), 3789-3806.
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Dannemann, M., Milaneschi, Y., Yermakovich, D., Stiglbauer, V., Kariis, H. M., Krebs, K., Friese, M. A., Otte, C., Esko, T., Metspalu, A., Milani, L., Mägi, R., Nelis, M., Lehto, K., Penninx, B. W. J. H., Kelso, J., Gold, S. M., & Team, E. B. R. (2022). Neandertal introgression partitions the genetic landscape of neuropsychiatric disorders and associated behavioral phenotypes. Translational Psychiatry, 12: 433.
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Fast, L., Ågren, R., & Zeberg, H. (2022). Fluorescence-based measurements of membrane-bound angiotensin converting enzyme 2 activity using Xenopus Laevis Oocytes. Biosensors, 12(8): 601.
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Gerber, T., Loureiro, C., Schramma, N., Chen, S., Jain, A., Weber, A., Weigert, A., Santel, M., Alim, K., Treutlein, B., & Camp, J. G. (2022). Spatial transcriptomic and single-nucleus analysis reveals heterogeneity in a gigantic single-celled syncytium. eLife, 11: e69745.
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Haeggström, S., Ingelman-Sundberg, M., Pääbo, S., & Zeberg, H. (2022). The clinically relevant CYP2C8*3 and CYP2C9*2 haplotype is inherited from Neandertals. The Pharmacogenomics Journal, 22, 247-249.
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He, Z., Maynard, A., Jain, A., Gerber, T., Petri, R., Lin, H.-C., Santel, M., Ly, K., Dupré, J.-S., Sidow, L., Sanchis Calleja, F., Jansen, S. M. J., Riesenberg, S., Camp, J. G., & Treutlein, B. (2022). Lineage recording in human cerebral organoids. Nature Methods, 19(1), 90-99.
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Hopkins, R. J. A., Hajdinjak, M., Šefčáková, A., Comeskey, D., Devièse, T., & Higham, T. F. G. (2022). Single amino acid radiocarbon dating of two Neanderthals found at Šal’a (Slovakia). Radiocarbon, 64, 87-100.
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Huffman , J. E., Butler-Laporte , G., Khan , A., Pairo-Castineira, E., Drivas, T. G., Peloso, G. M., Nakanishi , T., COVID-19 Host Genetics Initiative, Ganna, A., Verma, A., Baillie , J. K., Kiryluk, K., Richards , J. B., & Zeberg, H. (2022). Multi-ancestry fine mapping implicates OAS1 splicing in risk of severe COVID-19. Nature Genetics, 54, 125-127.
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Jagoda, E., Xue, J. R., Reilly, S. K., Dannemann, M., Racimo, F., Huerta-Sanchez, E., Sankararaman, S., Kelso, J., Pagani, L., Sabeti, P. C., & Capellini, T. D. (2022). Detection of Neanderthal adaptively introgressed genetic variants that modulate reporter gene expression in human immune cells. Molecular Biology and Evolution, 39(1): msab304.
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Kilpatrick, A. M., Rahman, F., Anjum, A., Shome, S., Andalib, K. M. S., Banik, S., Chowdhury, S. F., Coombe, P., Astroz, Y. C., Douglas, J. M., Eranti, P., Kiran, A. D., Kumar, S., Lim, H., Lorenzi, V., Lubiana, T., Mahmud, S., Puche, R., Rybarczyk, A., Sium, A., Muktadir, S., Twesigomwe, D., Zok, T., Orengo, C. A., Friedberg, I., Kelso, J., & Welch, L. (2022). Characterizing domain-specific open educational resources by linking ISCB Communities of Special Interest to Wikipedia. Bioinformatics, 38(Supplement_1), i19-i27.
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Körner, M. B., Velluva, A., Bundalian, L., Radtke, M., Lin, C.-C., Zacher, P., Bartolomaeus, T., Kirstein, A. S., Mrestani, A., Scholz, N., Platzer, K., Teichmann, A.-C., Hentschel, J., Langenhan, T., Lemke, J. R., Garten, A., Abou Jamra, R., & Le Duc, D. (2022). Altered gene expression profiles impair the nervous system development in individuals with 15q13.3 microdeletion. Scientific Reports, 12(1): 13507.
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Krumm, J., Sekine, K., Samaras, P., Brazovskaja, A., Breunig, M., Yasui, R., Kleger, A., Taniguchi, H., Wilhelm, M., Treutlein, B., Camp, J. G., & Kuster, B. (2022). High temporal resolution proteome and phosphoproteome profiling of stem cell-derived hepatocyte development. Cell Reports, 38: 110604.
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Le Duc, D., Velluva, A., Cassatt-Johnstone, M., Olsen, R.-A., Baleka, S., Lin, C.-C., Lemke, J. R., Southon, J. R., Burdin, A., Wang, M.-S., Grunewald, S., Rosendahl, W., Joger, U., Rutschmann, S., Hildebrandt, T. B., Fritsch, G., Estes, J. A., Kelso, J., Dalén, L., Hofreiter, M., Shapiro, B., & Schöneberg, T. (2022). Genomic basis for skin phenotype and cold adaptation in the extinct Steller’s sea cow. Science Advances, 8(5).
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Liu, D., Peter, B. M., Schiefenhövel, W., Kayser, M., & Stoneking, M. (2022). Assessing human genome-wide variation in the Massim region of Papua New Guinea and implications for the Kula trading tradition. Molecular Biology and Evolution, 39(8): msac165.
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Liu, Q., Iqbal, M. F., Yaqub, T., Firyal, S., Zhao, Y., Stoneking, M., & Li, M. (2022). The transmission of human mitochondrial DNA in four-generation pedigrees. Human Mutation, 43(9), 1259-1267.
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Massilani, D., Morley, M. W., Mentzer, S. M., Aldeias, V., Vernot, B., Miller, C., Stahlschmidt, M., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Conard, N. J., Wurz, S., Henshilwood, C. S., Vasquez, J., Essel, E., Nagel, S., Richter, J., Nickel, B., Roberts, R. G., Pääbo, S., Slon, V., Goldberg, P., & Meyer, M. (2022). Microstratigraphic preservation of ancient faunal and hominin DNA in Pleistocene cave sediments. Proceedings of the National Academy of Sciences, 119(1): e2113666118.
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Mora-Bermúdez, F., Kanis, P., Macak, D., Peters, J., Naumann, R., Xing, L., Sarov, M., Winkler, S., Oegema, C. E., Haffner, C., Wimberger, P., Riesenberg, S., Maricic, T., Huttner, W. B., & Pääbo, S. (2022). Longer metaphase and fewer chromosome segregation errors in modern human than Neanderthal brain development. Science Advances, 8: eabn7702.
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Mora-Bermúdez, F., Taverna, E., & Huttner, W. B. (2022). From stem and progenitor cells to neurons in the developing neocortex: Key differences among hominids. The FEBS Journal, 289(6), 1524-1535.
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Nebe, M., Kehr, S., Schmitz, S., Breitfeld, J., Lorenz, J., Le Duc, D., Stadler, P. F., Meiler, J., Kiess, W., Garten, A., & Kirstein, A. S. (2022). Small integral membrane protein 10 like 1 downregulation enhances differentiation of adipose progenitor cells. Biochemical and Biophysical Research Communications, 604, 57-62.
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Oliveira, S., Nägele, K., Carlhoff, S., Pugach, I., Koesbardiati, T., Hübner, A., Meyer, M., Oktaviana, A. A., Takenaka, M., Katagiri, C., Murti, D. B., Putri, R. S., Mahirta, Petchey, F., Higham, T., Higham, C., O’Connor, S., Hawkins, S., Kinaston, R., Bellwood, P., Ono, R., Powell, A., Krause, J., Posth, C., & Stoneking, M. (2022). Ancient genomes from the last three millennia support multiple human dispersals into Wallacea. Nature Ecology & Evolution, 6, 1024-1034.
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Oskolkov, N., Santel, M., Parikh, H. M., Ekström, O., Camp, J. G., Miyamoto-Mikami, E., Ström, K., Mir, B. A., Kryvokhyzha, D., Lehtovirta, M., Kobayashi, H., Kakigi, R., Naito, H., Eriksson, K.-F., Nystedt, B., Fuku, N., Treutlein, B., Pääbo, S., & Hansson, O. (2022). High-throughput muscle fiber typing from RNA sequencing data. Skeletal Muscle, 12: 16.
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Oxilia, G., Bortolini, E., Marciani, G., Menghi Sartorio, J. C., Vazzana, A., Bettuzzi, M., Panetta, D., Arrighi, S., Badino, F., Figus, C., Lugli, F., Romandini, M., Silvestrini, S., Sorrentino, R., Moroni, A., Donadio, C., Morigi, M. P., Slon, V., Piperno, M., Talamo, S., Collina, C., & Benazzi, S. (2022). Direct evidence that late Neanderthal occupation precedes a technological shift in southwestern Italy. American Journal of Biological Anthropology, 179(1), 18-30.
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Peter, B. M. (2022). A geometric relationship of F2, F3 and F4-statistics with principal component analysis. Philosophical Transactions of the Royal Society B: Biological Sciences, 377(1852): 20200413.
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Peyrégne, S., Kelso, J., Peter, B. M., & Pääbo, S. (2022). The evolutionary history of human spindle genes includes back-and-forth gene flow with Neandertals. eLife, 11: e75464.
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Pietzner, M., Chua, R. L., Wheeler, E., Jechow, K., Willett, J. D. S., Radbruch, H., Trump, S., Heidecker, B., Zeberg, H., Heppner, F. L., Eils, R., Mall, M. A., Richards, J. B., Sander, L.-E., Lehmann, I., Lukassen, S., Wareham, N. J., Conrad, C., & Langenberg, C. (2022). ELF5 is a potential respiratory epithelial cell-specific risk gene for severe COVID-19. Nature Communications, 13: 4484.
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Pinson, A., Xing, L., Namba, T., Kalebic, N., Peters, J., Oegema, C. E., Traikov, S., Reppe, K., Riesenberg, S., Maricic, T., Derihaci, R., Wimberger, P., Pääbo, S., & Huttner, W. B. (2022). Human TKTL1 implies greater neurogenesis in frontal neocortex of modern humans than Neanderthals. Science, 377(6611): eabl6422, pp. 1170.
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Riesenberg, S., Helmbrecht, N., Kanis, P., Maricic, T., & Pääbo, S. (2022). Improved gRNA secondary structures allow editing of target sites resistant to CRISPR-Cas9 cleavage. Nature Communications, 13: 489.
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Rocha, J. L., Vaz Pinto, P., Siegismund, H. R., Meyer, M., Jansen van Vuuren, B., Veríssimo, L., Ferrand, N., & Godinho, R. (2022). African climate and geomorphology drive evolution and ghost introgression in sable antelope. Molecular Ecology, 31(10), 2968-2984.
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Rodriguez, J., Cuales, J. M. D., Herrera, M. J. B., Zubiri, L. A. M., Muallil, R. N., Ishmael, A. I., Jimenez, E. B., Stoneking, M., & De Ungria, M. C. A. (2022). Ethical challenges in genetic research among Philippine Indigenous Peoples: Insights from fieldwork in Zamboanga and the Sulu Archipelago. Frontiers in Genetics, 13: 901515.
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Silén, C., Karlgren, K., Hjelmqvist, H., Meister, B., Zeberg, H., & Pettersson, A. (2022). Three-dimensional visualisation of authentic cases in anatomy learning – An educational design study. BMC Medical Education, 22(477).
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Skov, L., Peyrégne, S., Popli, D. R., Iasi, L. N., Devièse, T., Slon, V., Zavala, E. I., Hajdinjak, M., Sümer, A., Grote, S., Bossoms Mesa, A., López Herráez, D., Nickel, B., Nagel, S., Richter, J., Essel, E., Gansauge, M.-T., Schmidt, A., Korlević, P., Comeskey, D., Derevianko, A. P., Kharevich, A., Markin, S. V., Talamo, S., Douka, K., Krajcarz, M. T., Roberts, R. G., Higham, T., Viola, B., Krivoshapkin, A. I., Kolobova, K. A., Kelso, J., Meyer, M., Pääbo, S., & Peter, B. M. (2022). Genetic insights into the social organization of Neanderthals. Nature, 610, 519-525.
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Slon, V., Clark, J. L., Friesem, D. E., Orbach, M., Porat, N., Meyer, M., Kandel, A. W., & Shimelmitz, R. (2022). Extended longevity of DNA preservation in Levantine Paleolithic sediments, Sefunim Cave, Israel. Scientific Reports, 12: 14528.
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Wollny, D., Vernot, B., Wang, J., Hondele, M., Safrastyan, A., Aron, F., Micheel, J., He, Z., Hyman, A., Weis, K., Camp, J. G., Tang, T. D., & Treutlein, B. (2022). Characterization of RNA content in individual phase-separated coacervate microdroplets. Nature Communications, 13: 2626.
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Yu, H., Loosdrecht, M. S. v. d., Mannino, M. A., Talamo, S., Rohrlach, A. B., Childebayeva, A., Villalba-Mouco, V., Aron, F., Brandt, G., Burri, M., Freund, C., Radzeviciute, R., Stahl, R., Wissgott, A., Fewlass, H., Tagliacozzo, A., Piperno, M., Tusa, S., Collina, C., Schimmenti, V., Di Salvo, R., Prüfer, K., Posth, C., Hublin, J.-J., Gronenborn, D., Binder, D., Jeong, C., Haak, W., & Krause, J. (2022). Genomic and dietary discontinuities during the Mesolithic and Neolithic in Sicily. iScience, 5(25): 104244.
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Zavala, E. I., Ayinuer-Petri, A., Richter, J., Nickel, B., Vernot, B., & Meyer, M. (2022). Quantifying and reducing cross‐contamination in single‐ and multiplex hybridization capture of ancient DNA. Molecular Ecology Resources, 22(6), 2196-2207.
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Zavala, E. I., Thomas, J. T., Sturk-Andreaggi, K., Daniels-Higginbotham, J., Meyers, K. K., Barrit-Ross, S., Ayinuer-Petri, A., Richter, J., Nickel, B., Berg, G. E., McMahon, T. P., Meyer, M., & Marshall, C. (2022). Ancient DNA methods improve forensic DNA profiling of Korean War and World War II unknowns. Genes, 13(129).
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Zeberg, H. (2022). The major genetic risk factor for severe COVID-19 is associated with protection against HIV. Proceedings of the National Academy of Sciences of the United States of America, 119(9): e2116435119.
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2021

Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46.
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Berger, C., Heyne, H. O., Heiland, T., Dommel, S., Höfling, C., Guiu-Jurado, E., Lorenz, J., Roßner, S., Dannemann, M., Kelso, J., Kovacs, P., Blüher, M., & Klöting, N. (2021). A novel compound heterozygous leptin receptor mutation causes more severe obesity than in Lepr mice. Journal of Lipid Research, 62: 100105.
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Bokelmann, L., Nickel, O., Maricic, T., Pääbo, S., Meyer, M., Borte, S., & Riesenberg, S. (2021). Point-of-care bulk testing for SARS-CoV-2 by combining hybridization capture with improved colorimetric LAMP. Nature Communications, 12(1): 1467.
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Carlhoff, S., Duli, A., Nägele, K., Nur, M., Skov, L., Sumantri, I., Oktaviana, A. A., Hakim, B., Burhan, B., Syahdar, F. A., McGahan, D. P., Bulbeck, D., Perston, Y. L., Newman, K., Saiful, A. M., Ririmasse, M., Chia, S., Hasanuddin, Pulubuhu, D. A. T., Suryatman, Supriadi, Jeong, C., Peter, B. M., Prüfer, K., Powell, A., Krause, J., Posth, C., & Brumm, A. (2021). Genome of a middle Holocene hunter-gatherer from Wallacea. Nature, 596, 543-547.
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Choin, J., Mendoza-Revilla, J., Arauna, L. R., Cuadros-Espinoza, S., Cassar, O., Larena, M., Ko, A.-M.-S., Harmant, C., Laurent, R., Verdu, P., Laval, G., Boland, A., Olaso, R., Deleuze, J.-F., Valentin, F., Ko, Y.-C., Jakobsson, M., Gessain, A., Excoffier, L., Stoneking, M., Patin, E., & Quintana-Murci, L. (2021). Genomic insights into population history and biological adaptation in Oceania. Nature, 592(7855), 583-589.
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COVID-19 Host Genetics initiative, including authors, Zeberg, H., Niemi, M. E. K., Karjalainen, J., Liao, R. G., Neale, B. M., Daly, M., Ganna, A., Pathak, G. A., Andrews, S. J., Kanai, M., Veerapen, K., Fernandez-Cadenas, I., Schulte, E. C., Striano, P., Marttila, M., Minica, C., Marouli, E., Karim, M. A., Wendt, F. R., Savage, J., Sloofman, L., Butler-Laporte, G., Kim, H.-N., Kanoni, S., Okada, Y., Byun, J., Han, Y., Uddin, M. J., Smith, G. D., Willer, C. J., Buxbaum, J. D., Mehtonen, J., Finucane, H., Cordioli, M., Martin, A. R., Zhou, W., Pasaniuc, B., Julienne, H., Aschard, H., Shi, H., Yengo, L., Polimanti, R., Ghoussaini, M., Schwartzentruber, J., Dunham, I., Chwialkowska, K., Francescatto, M., Trankiem, A., Balaconis, M. K., Davis, L., Lee, S., Priest, J., Renieri, A., Sankaran, V. G., van Heel, D., Deelen, P., Richards, J. B., Nakanishi, T., Biesecker, L., Kerchberger, V. E., Baillie, J. K., Mari, F., Bernasconi, A., Baillie, S. C., Canakoglu, A., Wolford, B., Faucon, A., Dutta, A. K., Schurmann, C., Harry, E., Birney, E., Nguyen, H., Nasir, J., Kaunisto, M., Solomonson, M., Dueker, N., Vadgama, N., Limou, S., Rahmouni, S., Mbarek, H., Darwish, D., Uddin, M. M., Albertos, R., Pérez-Tur, J., Li, R., Folkersen, L., Moltke, I., Koelling, N., Teumer, A., Kousathanas, A., Utrilla, A., Verdugo, R. A., Zárate, R., Medina-Gómez, C., Gómez-Cabrero, D., Carnero-Montoro, E., Cadilla, C. L., Moreno-Estrada, A., Garmendia, A., Moya, L., Sedaghati-Khayat, B., Boua, P. R., Favé, M.-J., Francioli, L., Lemaçon, A., Migeotte, I., Patel, S., Varnai, R., Szentpeteri, J. L., Sipeky, C., Colombo, F., von Hohenstaufen, K., Lio, P., Vallerga, C., Wang, Q., Tanigawa, Y., Im, H., Han, C., Song, H., Lim, J., Lee, Y., Kim, S., Im, S., Atanasovska, B., Ahmad, H. F., Boer, C., Jansen, P., Franke, L., Kaja, E., Pasko, D., Kennis-Szilagyi, I., Kornilov, S. A., Prijatelj, V., Prokić, I., Sivanadhan, I., Perumal, S., Esmaeeli, S., Pearson, N. M., Auton, A., Shelton, J. F., Shastri, A. J., Filshtein-Sonmez, T., Coker, D., Symons, A., Esparza-Gordillo, J., Aslibekyan, S., O’Connell, J., Ye, C., Weldon, C. H., Perera, M., O’Leary, K., Tuck, M., O’Brien, T., Meltzer, D., O’Donnell, P., Nutescu, E., Yang, G., Alarcon, C., Herrmann, S., Mazurek, S., Banagan, J., Hamidi, Z., Barbour, A., Raffat, N., Moreno, D., Friedman, P., Ferwerda, B., van de Beek, D., Brouwer, M. C., Vlaar, A. P. J., Wiersinga, W. J., Posthuma, D., Tissink, E., Zwinderman, K. H. A., Uffelmann, E., van Agtmael, M., Algera, A. G., van Baarle, F., Bax, D., Beudel, M., Jan Bogaard, H., Bomers, M., Bonta, P. I., Bos, L., Botta, M., de Brabander, J., de Bree, G., de Bruin, S., Bugiani, M., Bulle, E., Chouchane, O., Cloherty, A., Dongelmans, D., Elbers, P., Fleuren, L., Geerlings, S., Geerts, B., Geijtenbeek, T., Girbes, A., Goorhuis, B., Grobusch, M. P., Hafkamp, F., Hagens, L., Hamann, J., Harris, V., Hemke, R., Hermans, S. M., Heunks, L., Hollmann, M., Horn, J., Hovius, J. W., de Jong, D. M., Koning, R., van Mourik, N., Nellen, J., Nossent, E. J., Paulus, F., Peters, E., van der Poll, T., Preckel, B., Prins, J. M., Raasveld, J., Reijnders, T., Schinkel, M., Schultz, M. J., Schuurman, A., Sigaloff, K., Smit, M., Stijnis, C. S., Stilma, W., Teunissen, C., Thoral, P., Tsonas, A., van der Valk, M., Veelo, D., de Vries, H., van Vugt, M., Wouters, D., Minnaar, R. P., Kromhout, A., van Uffelen, J. K. W., Wolterman, R. A., Roberts, G., Park, D., Ball, C. A., Coignet, M., McCurdy, S., Knight, S., Partha, R., & Rhead, B. (2021). Mapping the human genetic architecture of COVID-19. Nature, 600(7889), 472-477.
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Devièse, T., Abrams, G., Hajdinjak, M., Pirson, S., De Groote, I., Di Modica, K., Toussaint, M., Fischer, V., Comeskey, D., Spindler, L., Meyer, M., Semal, P., & Higham, T. (2021). Reevaluating the timing of Neanderthal disappearance in Northwest Europe. Proceedings of the National Academy of Sciences, 118(12): e2022466118.
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Devièse, T., Abrams, G., Hajdinjak, M., Pirson, S., De Groote, I., Di Modica, K., Toussaint, M., Fischer, V., Comeskey, D., Spindler, L., Meyer, M., Semal, P., & Higham, T. (2021). Reply to Van Peer: Direct radiocarbon dating and ancient genomic analysis reveal the true age of the Neanderthals at Spy Cave. Proceedings of the National Academy of Sciences of the United States of America, 118(26): e2107116118.
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Essel, E., Korlević, P., & Meyer, M. (2021). A method for the temperature-controlled extraction of DNA from ancient bones. Biotechniques, 71(1), 383-387.
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Evans, B. J., Peter, B., Melnick, D. J., Andayani, N., Supriatna, J., Zhu, J., & Tosi, A. J. (2021). Mitonuclear interactions and introgression genomics of macaque monkeys (Macaca) highlight the influence of behaviour on genome evolution. Proceedings of the Royal Society B: Biological Sciences, 288(1960): 20211756.
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Fellows Yates, J. A., Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M., Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A., Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2021). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. Scientific Data, 8: 31.
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Fleck, J. S., Sanchís-Calleja, F., He, Z., Santel, M., Boyle, M. J., Camp, J. G., & Treutlein, B. (2021). Resolving organoid brain region identities by mapping single-cell genomic data to reference atlases. Cell Stem Cell, 28, 1148-1159.
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Gjermeni, E., Kirstein, A. S., Kolbig, F., Kirchhof, M., Bundalian, L., Katzmann, J. L., Laufs, U., Blüher, M., Garten, A., & Le Duc, D. (2021). Obesity – an update on the basic pathophysiology and review of recent therapeutic advances. Biomolecules, 11(10): 1426.
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Guo, S., Huang, S., Jiang, X., Hu, H., Han, D., Moreno, C. S., Fairbrother, G. L., hughes, D. A., Stoneking, M., & Khaitovich, P. (2021). Variation of microRNA expression in the human placenta driven by population identity and sex of the newborn. BMC Genomics, 22: 286.
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Hajdinjak, M., Mafessoni, F., Skov, L., Vernot, B., Hübner, A., Fu, Q., Essel, E., Nagel, S., Nickel, B., Richter, J., Moldovan, O. T., Constantin, S., Endarova, E., Zahariev, N., Spasov, R., Welker, F., Smith, G. M., Sinet-Mathiot, V., Paskulin, L., Fewlass, H., Talamo, S., Rezek, Z., Sirakova, S., Sirakov, N., McPherron, S. P., Tsanova, T., Hublin, J.-J., Peter, B., Meyer, M., Skoglund, P., Kelso, J., & Pääbo, S. (2021). Initial Upper Palaeolithic humans in Europe had recent Neanderthal ancestry. Nature, 592, 253-257.
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Hodgkins, J., Orr, C. M., Gravel-Miguel, C., Riel-Salvatore, J., Miller, C. E., Bondioli, L., Nava, A., Lugli, F., Talamo, S., Hajdinjak, M., Cristiani, E., Romandini, M., Meyer, D., Drohobytsky, D., Kuester, F., Pothier-Bouchard, G., Buckley, M., Mancini, L., Baruffaldi, F., Silvestrini, S., Arrighi, S., Keller, H. M., Griggs, R. B., Peresani, M., Strait, D. S., Benazzi, S., & Negrino, F. (2021). An infant burial from Arma Veirana in northwestern Italy provides insights into funerary practices and female personhood in early Mesolithic Europe. Scientific Reports, 11: 23735.
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Hou, Q.-Q., Xiao, Q., Sun, X.-Y., Ju, X.-C., & Luo, Z.-G. (2021). TBC1D3 promotes neural progenitor proliferation by suppressing the histone methyltransferase G9a. Science Advances, 7: eaba8053.
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Iasi, L. N., Ringbauer, H., & Peter, B. (2021). An extended admixture pulse model reveals the limitations to human-Neandertal introgression dating. Molecular Biology and Evolution, 38(11), 5156-5174.
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Jauss, R.-T., Nowack, A., Walden, S., Wolf, R., Schaffer, S., Schellbach, B., Bonkowski, M., & Schlegel, M. (2021). To the canopy and beyond: Air dispersal as a mechanism of ubiquitous protistan pathogen assembly in tree canopies. European Journal of Protistology, 80: 125805.
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Kirstein, A. S., Kehr, S., Nebe, M., Hanschkow, M., Barth, L. A., Lorenz, J., Penke, M., Breitfeld, J., Le Duc, D., Landgraf, K., Körner, A., Kovacs, P., Stadler, P. F., Kiess, W., & Garten, A. (2021). PTEN regulates adipose progenitor cell growth, differentiation, and replicative aging. Journal of Biological Chemistry, 297(2): 100968.
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Le Duc, D., Hentschel, J., Neuser, S., Stiller, M., Meier, C., Jäger, E., Abou Jamra, R., Platzer, K., Monecke, A., Ziemer, M., Markovic, A., Bläker, H., & Lemke, J. R. (2021). In cis TP53 and RAD51C pathogenic variants may predispose to sebaceous gland carcinomas. European Journal of Human Genetics, 29, 489-494.
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Nakanishi, T., Pigazzini, S., Degenhardt, F., Cordioli, M., Butler-Laporte, G., Maya-Miles, D., Bujanda, L., Bouysran, Y., Niemi, M. E., Palom, A., Ellinghaus, D., Khan, A., Martínez-Bueno, M., Rolker, S., Amitrano, S., Tato, L. R., Fava, F., FinnGen, (HGI), T.-C.-1.-H.-G.-I., Spinner, C. D., Prati, D., Bernardo, D., Garcia, F., Darcis, G., Fernández-Cadenas, I., Holter, J. C., Banales, J. M., Frithiof, R., Kiryluk, K., Duga, S., Asselta, R., Pereira, A. C., Romero-Gómez, M., Nafría-Jiménez, B., Hov, J. R., Migeotte, I., Renieri, A., Planas, A. M., Ludwig, K. U., Buti, M., Rahmouni, S., Alarcón-Riquelme, M. E., Schulte, E. C., Franke, A., Karlsen, T. H., Valenti, L., Zeberg, H., Richards, J. B., & Ganna, A. (2021). Age-dependent impact of the major common genetic risk factor for COVID-19 on severity and mortality. The Journal of Clinical Investigation, 131(23).
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Overcast, I., Ruffley, M., Rosindell, J., Harmon, L., Borges, P. A. V., Emerson, B. C., Etienne, R. S., Gillespie, R., Krehenwinkel, H., Mahler, D. L., Massol, F., Parent, C. E., Patiño, J., Peter, B., Week, B., Wagner, C., Hickerson, M. J., & Rominger, A. (2021). A unified model of species abundance, genetic diversity, and functional diversity reveals the mechanisms structuring ecological communities. Molecular Ecology Resources, 21(8), 2782-2800.
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Pakendorf, B., & Stoneking, M. (2021). The genomic prehistory of peoples speaking Khoisan languages. Human Molecular Genetics, 30(2), R49-R55.
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Picin, A., Benazzi, S., Blasco, R., Hajdinjak, M., Helgen, K. M., Hublin, J.-J., Rosell, J., Skoglund, P., Stringer, C., & Talamo, S. (2021). Comment on “A global environmental crisis 42,000 years ago”. Science, 374(6570): eabi8330.
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Pugach, I., Hübner, A., Hung, H.-c., Meyer, M., Carson, M. T., & Stoneking, M. (2021). Ancient DNA from Guam and the peopling of the Pacific. Proceedings of the National Academy of Sciences, 118(1): e202211211.
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Reinscheid, R. K., Mafessoni, F., Lüttjohann, A., Jüngling, K., Pape, H.-C., & Schulz, S. (2021). Neandertal introgression and accumulation of hypomorphic mutations in the neuropeptide S (NPS) system promote attenuated functionality. Peptides, 138: 170506.
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Schörnig, M., & Taverna, E. (2021). A closer look to the evolution of neurons in humans and apes using stem-cell-derived model systems. Frontiers in Cell and Developmental Biology, 9: 661113.
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Schörnig, M., Ju, X.-C., Fast, L., Weigert, A., Schaffer, T., Ebert, S., Treutlein, B., Kasri, N. N., Peter, B., Hevers, W., & Taverna, E. (2021). Comparison of induced neurons reveals slower structural and functional maturation in humans than in apes. eLife, 10: e59323.
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Shull, G., Haffner, C., Huttner, W. B., Taverna, E., & Kodandaramaiah, S. B. (2021). Manipulation of Single Neural Stem Cells and Neurons in Brain Slices using Robotic Microinjection. Journal of Visualized Experiments, 167: e61599.
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Silvestrini, S., Romandini, M., Marciani, G., Arrighi, S., Carrera, L., Fiorini, A., López-García, J. M., Lugli, F., Ranaldo, F., Slon, V., Tassoni, L., Higgins, O. A., Bortolini, E., Curci, A., Meyer, M., Meyer, M. C., Oxilia, G., Zerboni, A., Benazzi, S., & Spinapolice, E. E. (2021). Integrated multidisciplinary ecological analysis from the Uluzzian settlement at the Uluzzo C Rock Shelter, south-eastern Italy. Journal of Quaternary Science, 37(2): jqs.3341, pp. 235-256.
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Srithawong, S., Muisuk, K., Srikummool, M., Kampuansai, J., Pittayaporn, P., Ruangchai, S., Liu, D., & Kutanan, W. (2021). Close genetic relationship between central Thai and Mon people in Thailand revealed by autosomal microsatellites. International Journal of Legal Medicine, 135, 445-448.
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Stepanova, V., Moczulska, K., Vacano, G. N., Kurochkin, I., Ju, X.-C., Riesenberg, S., Macak, D., Maricic, T., Dombrowski, L., Schörnig, M., Anastassiadis, K., Baker, O., Naumann, R., Khrameeva, E., Vanushkina, A., Stekolschikova, E., Egorova, A., Nkatchev, A., Mazzarino, R., Duval, N., Zubkov, D., Giavalisco, P., Wilkinson, T. G., Patterson, D., Khaitovich, P., & Pääbo, S. (2021). Reduced purine biosynthesis in humans after their divergence from Neandertals. eLife, 10: e58741.
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Stoneking, M. (2021). Genomic insights into the Out-of-Africa dispersal(s) of modern humans. In M. d. L. Muñoz-Moreno, & M. H. Crawford (Eds.), Human migration: Biocultural perspectives (pp. 9-19). Oxford: Oxford University Press.
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Suchý, T., Kaczmarek, I., Maricic, T., Zieschang, C., Schöneberg, T., Thor, D., & Liebscher, I. (2021). Evaluating the feasibility of Cas9 overexpression in 3T3-L1 cells for generation of genetic knock-out adipocyte cell lines. Adipocyte, 10(1), 631-645.
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Troitzsch, D., Zhang, H., Dittmann, S., Düsterhöft, D., Möller, T. A., Michel, A.-M., Jänsch, L., Riedel, K., Borrero-de Acuña, J. M., Jahn, D., & Sievers, S. (2021). A point mutation in the transcriptional repressor PerR results in a constitutive oxidative stress response in Clostridioides difficile 630Δerm. mSphere, 6(2): e00091-21.
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Trucchi, E., Gratton, P., Mafessoni, F., Motta, S., Cicconardi, F., Bertorelle, G., D’Annessa, I., & Marino, D. D. (2021). Population dynamics and structural effects at short and long range support the hypothesis of the selective advantage of the G614 SARS-CoV-2 spike variant. Molecular Biology and Evolution, 38(5), 1966-1979.
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Velluva, A., Radtke, M., Horn, S., Popp, B., Platzer, K., Gjermeni, E., Lin, C.-C., Lemke, J. R., Garten, A., Schöneberg, T., Blüher, M., Abou Jamra, R., & Le Duc, D. (2021). Phenotype-tissue expression and exploration (PTEE) resource facilitates the choice of tissue for RNA-seq-based clinical genetics studies. BMC Genomics, 22(802).
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Vernot, B., Zavala, E. I., Gómez-Olivencia, A., Jacobs, Z., Slon, V., Mafessoni, F., Romagné, F., Pearson, A., Petr, M., Sala, N., Pablos, A., Aranburu, A., de Castro, J. M. B., Carbonell, E., Li, B., Krajcarz, M. T., Krivoshapkin, A. I., Kolobova, K. A., Kozlikin, M. B., Shunkov, M. V., Derevianko, A. P., Viola, B., Grote, S., Essel, E., López Herráez, D., Nagel, S., Nickel, B., Richter, J., Schmidt, A., Peter, B., Kelso, J., Roberts, R. G., Arsuaga, J.-L., & Meyer, M. (2021). Unearthing Neanderthal population history using nuclear and mitochondrial DNA from cave sediments. Science, eabf1667.
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Zavala, E. I., Jacobs, Z., Vernot, B., Shunkov, M. V., Kozlikin, M. B., Derevianko, A. P., Essel, E., de Filippo, C., Nagel, S., Richter, J., Romagné, F., Schmidt, A., Li, B., O’Gorman, K., Slon, V., Kelso, J., Pääbo, S., Roberts, R. G., & Meyer, M. (2021). Pleistocene sediment DNA reveals hominin and faunal turnovers at Denisova Cave. Nature, 595, 399-403.
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Zeberg, H., & Pääbo, S. (2021). A genomic region associated with protection against severe COVID-19 is inherited from Neandertals. Proceedings of the National Academy of Sciences, 118(9): e2026309118.
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2020

Balzeau, A., Turq, A., Talamo, S., Daujeard, C., Guérin, G., Welker, F., Crevecoeur, I., Fewlass, H., Hublin, J.-J., Lahaye, C., Maureille, B., Meyer, M., Schwab, C., & Gómez-Olivencia, A. (2020). Pluridisciplinary evidence for burial for the La Ferrassie 8 Neandertal child. Scientific Reports, 10: 21230.
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Bokelmann, L., Glocke, I., & Meyer, M. (2020). Reconstructing double-stranded DNA fragments on a single-molecule level reveals patterns of degradation in ancient samples. Genome Research, 30(10), 1449-1457.
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Braadbaart, F., Reidsma, F., Roebroeks, W., Chiotti, L., Slon, V., Meyer, M., Théry-Parisot, I., van Hoesel, A., Nierop, K., Kaal, J., van Os, B., & Marquer, L. (2020). Heating histories and taphonomy of ancient fireplaces: A multi-proxy case study from the Upper Palaeolithic sequence of Abri Pataud (Les Eyzies-de-Tayac, France). Journal of Archaeological Science: Reports, 33: 102468.
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Cauret, C. M. S., Gansauge, M.-T., Tupper, A. S., Furman, B. L. S., Knytl, M., Song, X., Greenbaum, E., Meyer, M., & Evans, B. J. (2020). Developmental systems drift and the drivers of sex chromosome evolution. Molecular Biology and Evolution, 37(3), 799-808.
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Dannemann, M., He, Z., Heide, C., Vernot, B., Sidow, L., Kanton, S., Weigert, A., Treutlein, B., Pääbo, S., Kelso, J., & Camp, J. G. (2020). Human stem cell resources are an inroad to Neandertal DNA functions. Stem Cell Reports, 15, 214-225.
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Evans, B. J., Gansauge, M.-T., Tocheri, M. W., Schillaci, M. A., Sutikna, T., Jatmiko, Saptomo, E. W., Klegarth, A., Tosi, A. J., Melnick, D. J., & Meyer, M. (2020). Mitogenomics of macaques (Macaca) across Wallace's Line in the context of modern human dispersals. Journal of Human Evolution, 146: 102852.
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Gansauge, M.-T., Aximu-Petri, A., Nagel, S., & Meyer, M. (2020). Manual and automated preparation of single-stranded DNA libraries for the sequencing of DNA from ancient biological remains and other sources of highly degraded DNA. Nature Protocols, 15, 2279-2300.
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Gunnarsdottir, E. D., & Stoneking, M. (2020). Genetic Landscape of Present-Day Hunter-Gatherer Groups. In T. Güldemann (Ed.), Language of Hunter-Gatherers (pp. 49-75). Cambridge: Cambridge University Press.
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He, Z., Brazovskaja, A., Ebert, S., Camp, J. G., & Treutlein, B. (2020). CSS: Cluster similarity spectrum integration of single-cell genomics data. Genome Biology, 21: 224.
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Hublin, J.-J., Sirakov, N., Aldeias, V., Bailey, S., Bard, E., Delvigne, V., Endarova, E., Fagault, Y., Fewlass, H., Hajdinjak, M., Kromer, B., Krumov, I., Marreiros, J., Martisius, N. L., Paskulin, L., Sinet-Mathiot, V., Meyer, M., Pääbo, S., Popov, V., Rezek, Z., Sirakova, S., Skinner, M. M., Smith, G. M., Spasov, R., Talamo, S., Tuna, T., Wacker, L., Welker, F., Wilcke, A., Zahariev, N., McPherron, S. P., & Tsanova, T. (2020). Initial Upper Palaeolithic Homo sapiens from Bacho Kiro Cave, Bulgaria. Nature, 581(7808), 299-302.
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Kanton, S., Treutlein, B., & Camp, J. G. (2020). Single-cell genomic analysis of human cerebral organoids. In J. R. Spence (Ed.), Human Pluripotent Stem Cell Derived Organoid Models (pp. 229-256). Elsevier.
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Key, F. M., Posth, C., Esquivel-Gomez, L. R., Hübler, R., Spyrou, M. A., Neumann, G., Furtwängler, A., Sabin, S., Burri, M., Wissgott, A., Lankapalli, A. K., Vågene, Å. J., Meyer, M., Nagel, S., Tukhbatova, R. I., Khokhlov, A., Chizhevsky, A., Hansen, S., Belinsky, A. B., Kalmykov, A., Kantorovich, A. R., Maslov, V. E., Stockhammer, P. W., Vai, S., Zavattaro, M., Riga, A., Caramelli, D., Skeates, R., Beckett, J., Gradoli, M. G., Steuri, N., Hafner, A., Ramstein, M., Siebke, I., Lösch, S., Erdal, Y. S., Alikhan, N.-F., Zhou, Z., Achtman, M., Bos, K. I., Reinhold, S., Haak, W., Kühnert, D., Herbig, A., & Krause, J. (2020). Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution, 4, 324-333.
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Khan, N., de Manuel, M., Peyrégne, S., Do, R., Prüfer, K., Marques-Bonet, T., Varki, N., Gagneux, P., & Varki, A. (2020). Multiple Genomic Events Altering Hominin SIGLEC Biology and Innate Immunity Predated the Common Ancestor of Humans and Archaic Hominins. Genome Biology and Evolution, 12(7), 1040-1050.
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Khrameeva, E., Kurochkin, I., Han, D., Guijarro, P., Kanton, S., Santel, M., Qian, Z., Rong, S., Mazin, P., Sabirov, M., Bulat, M., Efimova, O., Tkachev, A., Guo, S., Sherwood, C. C., Camp, J. G., Pääbo, S., Treutlein, B., & Khaitovich, P. (2020). Single-cell-resolution transcriptome map of human, chimpanzee, bonobo, and macaque brains. Genome Research, 30(5), 776-789.
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Kutanan, W., Shoocongdej, R., Srikummool, M., Hübner, A., Suttipai, T., Srithawong, S., Kampuansai, J., & Stoneking, M. (2020). Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand. European Journal of Human Genetics, 28, 1563-1579.
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Lang, P. L. M., Weiß, C. L., Kersten, S., Latorre, S. M., Nagel, S., Nickel, B., Meyer, M., & Burbano, H. A. (2020). Hybridization ddRAD-sequencing for population genomics of nonmodel plants using highly degraded historical specimen DNA. Molecular Ecology Resources, 20(5), 1228-1247.
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Liu, D., Duong, N. T., Ton, N. D., Van Phong, N., Pakendorf, B., Van Hai, N., & Stoneking, M. (2020). Extensive ethnolinguistic diversity in Vietnam reflects multiple sources of genetic diversity. Molecular Biology and Evolution, 37(9): msaa099, pp. 2503-2519.
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Mafessoni, F., Grote, S., de Filippo, C., Slon, V., Kolobova, K. A., Viola, B., Markin, S. V., Chintalapati, M., Peyrégne, S., Skov, L., Skoglund, P., Krivoshapkin, A. I., Derevianko, A. P., Meyer, M., Kelso, J., Peter, B., Prüfer, K., & Pääbo, S. (2020). A high-coverage Neandertal genome from Chagyrskaya Cave. Proceedings of the National Academy of Sciences, 117(26), 15132-15136.
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Maricic, T., Nickel, O., Ayinuer-Petri, A., Essel, E., Gansauge, M.-T., Kanis, P., Macak, D., Riesenberg, S., Bokelmann, L., Zeberg, H., Meyer, M., Borte, S., & Pääbo, S. (2020). A direct RT-qPCR approach to test large numbers of individuals for SARS-CoV-2. PLoS One, 15(12): e0244824.
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Massilani, D., Skov, L., Hajdinjak, M., Gunchinsuren, B., Tseveendorj, D., Yi, S., Lee, J., Nagel, S., Nickel, B., Devièse, T., Higham, T., Meyer, M., Kelso, J., Peter, B., & Pääbo, S. (2020). Denisovan ancestry and population history of early East Asians. Science, 370(6516), 579-583.
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Miller, A. J., Yu, Q., Czerwinski, M., Tsai, Y.-H., Conway, R. F., Wu, A., Holloway, E. M., Walker, T., Glass, I. A., Treutlein, B., Camp, J. G., & Spence, J. R. (2020). In vitro and in vivo development of the human airway at single-cell resolution. Developmental Cell, 53(1): e6, pp. 117-128.
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Mitina, A., Mazin, P., Vanyushkina, A., Anikanov, N., Mair, W., Guo, S., & Khaitovich, P. (2020). Lipidome analysis of milk composition in humans, monkeys, bovids, and pigs. BMC Evolutionary Biology, 20(70).
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Ou, M.-Y., Ju, X.-C., Cai, Y.-J., Sun, X.-Y., Wang, J.-F., Fu, X.-Q., Sun, Q., & Luo, Z.-G. (2020). Heterogeneous nuclear ribonucleoprotein A3 controls mitotic progression of neural progenitors via interaction with cohesin. Development, 147: dev185132.
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Parker, E. C., Rohrlach, A. B., Friederich, S., Nagel, S., Meyer, M., Krause, J., Bos, K. I., & Haak, W. (2020). A systematic investigation of human DNA preservation in medieval skeletons. Scientific Reports, 10(1): 18225.
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Pedro, N., Brucato, N., Fernandes, V., André, M., Saag, L., Pomat, W., Besse, C., Boland, A., Deleuze, J.-F., Clarkson, C., Sudoyo, H., Metspalu, M., Stoneking, M., Cox, M. P., Leavesley, M., Pereira, L., & Ricaut, F.-X. (2020). Papuan mitochondrial genomes and the settlement of Sahul. Journal of Human Genetics, 65(875), 887.
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Peter, B. M., Petkova, D., & Novembre, J. (2020). Genetic landscapes reveal how human genetic diversity aligns with geography. Molecular Biology and Evolution, 37(4), 943-951.
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Petr, M., Hajdinjak, M., Fu, Q., Essel, E., Rougier, H., Crevecoeur, I., Semal, P., Golovanova, L. V., Doronichev, V. B., Lalueza-Fox, C., de la Rasilla, M., Rosas, A., Shunkov, M. V., Kozlikin, M. B., Derevianko, A. P., Vernot, B., Meyer, M., & Kelso, J. (2020). The evolutionary history of Neanderthal and Denisovan Y chromosomes. Science, 369(6511), 1653-1656.
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Peyrégne, S. (2020). Tracing the ancestral roots of Neandertals. The Science Breaker, 6(1).
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Peyrégne, S., & Peter, B. M. (2020). AuthentiCT: A model of ancient DNA damage to estimate the proportion of present-day DNA contamination. Genome Biology, 21: 246.
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Peyrégne, S., & Prüfer, K. (2020). Present-Day DNA contamination in ancient DNA datasets. BioEssays, 42: 2000081.
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Picin, A., Hajdinjak, M., Nowaczewska, W., Benazzi, S., Urbanowski, M., Marciszak, A., Fewlass, H., Socha, P., Stefaniak, K., Żarski, M., Wiśniewski, A., Hublin, J.-J., Nadachowski, A., & Talamo, S. (2020). New perspectives on Neanderthal dispersal and turnover from Stajnia Cave (Poland). Scientific Reports, 10: 14778.
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Romandini, M., Gregorio, O., Bortolini, E., Peyrégne, S., Delpiano, D., Nava, A., Panetta, D., Domenico, G. D., Martini, P., Arrighi, S., Badino, F., Figus, C., Lugli, F., Marciani, G., Silvestrini, S., Sartorio, J. C. M., Terlato, G., Hublin, J.-J., Meyer, M., Bondioli, L., Higham, T., Slon, V., Peresani, M., & Benazzi, S. (2020). A late Neanderthal tooth from northeastern Italy. Journal of Human Evolution, 147: 102867.
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Semo, A., Gayà-Vidal, M., Fortes-Lima, C., Alard, B., Oliveira, S., Almeida, J., Prista, A., Damasceno, A., Fehn, A., Schlebusch, C., & Rocha, J. (2020). Along the Indian Ocean coast: Genomic variation in Mozambique provides new insights into the Bantu expansion. Molecular Biology and Evolution, 37(2), 406-416.
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Skov, L., Macià, M. C., Sveinbjörnsson, G., Mafessoni, F., Lucotte, E. A., Einarsdóttir, M. S., Jonsson, H., Halldorsson, B., Gudbjartsson, D. F., Helgason, A., Schierup, M. H., & Stefansso, K. (2020). The nature of Neanderthal introgression revealed by 27,566 Icelandic genomes. Nature, 582, 78-83.
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Telford, M., Hughes, D. A., Juan, D., Stoneking, M., Navarro, A., & Santpere, G. (2020). Expanding the Geographic Characterisation of Epstein–Barr Virus Variation through Gene-Based Approaches. Microorganisms, 8: 1686.
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Voiculescu, S. E., Le Duc, D., Rosca, A. E., & Zagrean, A.-M. (2020). The pineal gland development and its physiology in fetus and neonate. In C. S. Kovacs, & C. L. Deal (Eds.), Maternal-Fetal and Neonatal Endocrinology: Physiology, Pathophysiology, and Clinical Management (pp. 547-561). Academic Press.
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Weiß, C. L., Gansauge, M.-T., Aximu-Petri, A., Meyer, M., & Burbano, H. A. (2020). Mining ancient microbiomes using selective enrichment of damaged DNA molecules. BMC Genomics, 21: 432.
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Yang, M. A., Fan, X., Sun, B., Chen, C., Lang, J., Ko, Y.-C., Tsang, C.-h., Chiu, H., Wang, T., Bao, Q., Wu, X., Hajdinjak, M., Ko, A.-M.-S., Ding, M., Cao, P., Yang, R., Liu, F., Nickel, B., Dai, Q., Feng, X., Zhang, L., Sun, C., Ning, C., Zeng, W., Zhao, Y., Zhang, M., Gao, X., Cui, Y., Reich, D., Stoneking, M., & Fu, Q. (2020). Ancient DNA indicates human population shifts and admixture in northern and southern China. Science, 369(6501), 282-288.
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Zeberg, H., & Pääbo, S. (2020). The major genetic risk factor for severe COVID-19 is inherited from Neanderthals. Nature, 587(7835), 610-612.
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Zeberg, H., Dannemann, M., Sahlholm, K., Tsuo, K., Maricic, T., Wiebe, V., Hevers, W., Robinson, H. P., Kelso, J., & Pääbo, S. (2020). A Neandertal sodium channel increases pain sensitivity in present-day humans. Current Biology, 30(17), 3465-3469.
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Zeberg, H., Kelso, J., & Pääbo, S. (2020). The Neandertal progesterone receptor. Molecular Biology and Evolution, 37(9): msaa119, pp. 2655-2660.
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Zhang, D., Xia, H., Chen, F., Li, B., Slon, V., Cheng, T., Yang, R., Jacobs, Z., Dai, Q., Massilani, D., Shen, X., Wang, J., Feng, X., Cao, P., Yang, M. A., Yao, J., Yang, J., Madsen, D. B., Han, Y., Ping, W., Liu, F., Perreault, C., Chen, X., Meyer, M., Kelso, J., Pääbo, S., & Fu, Q. (2020). Denisovan DNA in Late Pleistocene sediments from Baishiya Karst Cave on the Tibetan Plateau. Science, 370(6516), 584-587.
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2019

Barbieri, C., Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, 36(12), 2698-2713.
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Bokelmann, L., Hajdinjak, M., Peyrégne, S., Brace, S., Essel, E., de Filippo, C., Glocke, I., Grote, S., Mafessoni, F., Nagel, S., Kelso, J., Prüfer, K., Vernot, B., Barnes, I., Pääbo, S., Meyer, M., & Stringer, C. (2019). A genetic analysis of the Gibraltar Neanderthals. Proceedings of the National Academy of Sciences, 116(31), 15610-15615.
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Brazovskaja, A., Treutlein, B., & Camp, J. G. (2019). High-throughput single-cell transcriptomics on organoids. Current Opinion in Biotechnology, 55, 167-171.
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Brucato, N., Fernandes, V., Kusuma, P., Černý, V., Mulligan, C. J., Soares, P., Rito, T., Besse, C., Boland, A., Deleuze, J.-F., Cox, M. P., Sudoyo, H., Stoneking, M., Pereira, L., & Ricaut, F.-X. (2019). Evidence of Austronesian genetic lineages in East Africa and South Arabia: Complex dispersal from Madagascar and Southeast Asia. Genome Biology and Evolution, 11(3), 748-758.
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Bücking, R., Cox, M. P., Hudjashov, G., Saag, L., Sudoyo, H., & Stoneking, M. (2019). Archaic mitochondrial DNA inserts in modern day nuclear genomes. BMC Genomics, 20: 1017.
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Dabney, J., & Meyer, M. (2019). Extraction of highly degraded DNA from ancient bones and teeth. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 25-29). New York, NY: Springer.
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Dannemann, M. (2019). Der Neandertaler in uns. BIOspektrum, 25(5), 497-499.
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Devièse, T., Massilani, D., Yi, S., Comeskey, D., Nagel, S., Nickel, B., Ribechini, E., Lee, J., Tseveendorj, D., Gunchinsuren, B., Meyer, M., Pääbo, S., & Higham, T. (2019). Compound-specific radiocarbon dating and mitochondrial DNA analysis of the Pleistocene hominin from Salkhit Mongolia. Nature Communications, 10(10): 274.
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Douka, K., Brown, S., Higham, T., Pääbo, S., Derevianko, A., & Shunkov, M. (2019). FINDER project: Collagen fingerprinting (ZooMS) for the identification of new human fossils. Antiquity, 93(367): e1.
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Douka, K., Slon, V., Jacobs, Z., Ramsey, C. B., Shunkov, M. V., Derevianko, A. P., Mafessoni, F., Kozlikin, M. B., Li, B., Grün, R., Comeskey, D., Devièse, T., Brown, S., Viola, B., Kinsley, L., Buckley, M., Meyer, M., Roberts, R. G., Pääbo, S., Kelso, J., & Higham, T. (2019). Age estimates for hominin fossils and the onset of the Upper Palaeolithic at Denisova Cave. Nature, 565(7741), 640-644.
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Drukewitz, S. H., Bokelmann, L., Undheim, E. A. B., & von Reumont, B. M. (2019). Toxins from scratch? Diverse, multimodal gene origins in the predatory robber fly Dasypogon diadema indicate a dynamic venom evolution in dipteran insects. GigaScience, 8(7): giz081.
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Drukewitz, S. H., Jauss, R.-T., Bokelmann, L., & von Reumont, B. M. (2019). The complete mitochondrial genome of the hymenopteran hunting robber fly Dasypogon diadema. Mitochondrial DNA Part B, 4(1), 1584-1585.
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Evans, B. J., Gansauge, M.-T., Stanley, E. L., Furman, B. L. S., Cauret, C. M. S., Ofori-Boateng, C., Gvoždík, V., Streicher, J. W., Greenbaum, E., Tinsley, R. C., Meyer, M., & Blackburn, D. C. (2019). Xenopus fraseri: Mr. Fraser, where did your frog come from? PLoS One, 14(9): e0220892.
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Ezra, D., Hershkovitz, I., Salame, K., Alperovitch-Najenson, D., & Slon, V. (2019). Osteophytes in the Cervical Vertebral Bodies (C3–C7)—Demographical Perspectives. The Anatomical Record, 302(2), 226-231.
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Ezra, D., Slon, V., Kedar, E., Masharawi, Y., Salame, K., Alperovitch-Najenson, D., & Hershkovitz, I. (2019). The torg ratio of C3-C7 in African Americans and European Americans: A skeletal study. Clinical Anatomy, 32(1), 84-89.
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Gansauge, M.-T., & Meyer, M. (2019). A method for single-stranded ancient DNA library preparation. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 75-83). New York, NY: Springer.
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Giner-Delgado, C., Villatoro, S., Lerga-Jaso, J., Gayà-Vidal, M., Oliva, M., Castellano, D., Pantano, L., Bitarello, B. D., Izquierdo, D., Noguera, I., Olalde, I., Delprat, A., Blancher, A., Lalueza-Fox, C., Esko, T., O’Reilly, P. F., Andrés, A. M., Ferretti, L., Puig, M., & Cáceres, M. (2019). Evolutionary and functional impact of common polymorphic inversions in the human genome. Nature Communications, 10(4222).
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Gunz, P., Tilot, A. K., Wittfeld, K., Teumer, A., Shapland, C. Y., van Erp, T. G. M., Dannemann, M., Vernot, B., Neubauer, S., Guadalupe, T., Fernández, G., Brunner, H. G., Enard, W., Fallon, J., Hosten, N., Völker, U., Profico, A., Di Vincenzo, F., Manzi, G., Kelso, J., St. Pourcain, B., Hublin, J.-J., Franke, B., Pääbo, S., Macciardi, F., Grabe, H. J., & Fisher, S. E. (2019). Neandertal introgression sheds light on modern human endocranial globularity. Current Biology, 29(1), 120-127.e5.
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Han, S., Andrés, A. M., & Marques-Bonet, T. (2019). Genetic variation in Pan species is shaped by demographic history and harbors lineage-specific functions. Genome Biology and Evolution, 11(4), 1178-1191.
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Hübner, A., Wachsmuth, M., Schröder, R., Li, M., Eis-Hübinger, A. M., Madea, B., & Stoneking, M. (2019). Sharing of heteroplasmies between human liver lobes varies across the mtDNA genome. Scientific Reports, 9: 11219.
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Jacobs, G. S., Hudjashov, G., Saag, L., Kusuma, P., Darusallam, C. C., Lawson, D. J., Mondal, M., Pagani, L., Ricaut, F.-X., Stoneking, M., Metspalu, M., Sudoyo, H., Lansing, J. S., & Cox, M. P. (2019). Multiple deeply divergent Denisovan ancestries in Papuans. Cell, 117(4), 1010-1021.
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Kanton, S., Boyle, M. J., He, Z., Santel, M., Weigert, A., Sanchís-Calleja, F., Guijarro, P., Sidow, L., Fleck, J. S., Han, D., Qian, Z., Heide, M., Huttner, W. B., Khaitovich, P., Pääbo, S., Treutlein, B., & Camp, J. G. (2019). Organoid single-cell genomic atlas uncovers human-specific features of brain development. Nature, 574(7778), 418-422.
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Klaus, J., Kanton, S., Kyrousi, C., Ayo-Martin, A. C., Giaimo, R. D., Riesenberg, S., O’Neill, A. C., Camp, J. G., Tocco, C., Santel, M., Rusha, E., Drukker, M., Schroeder, M., Götz, M., Robertson, S. P., Treutlein, B., & Cappello, S. (2019). Altered neuronal migratory trajectories in human cerebral organoids derived from individuals with neuronal heterotopia. Nature Medicine, 25, 561-568.
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Klein, A. M., & Treutlein, B. (2019). Single cell analyses of development in the modern era. Development, 146(12): dev181396.
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Korlević, P., & Meyer, M. (2019). Pretreatment: Removing DNA contamination from ancient bones and teeth using sodium hypochlorite and phosphate. In B. Shapiro, A. Barlow, P. D. Heintzman, M. Hofreiter, J. L. A. Paijmans, & A. E. R. Soares (Eds.), Ancient DNA: Methods and Protocols (2nd ed., pp. 15-19). New York, NY: Springer.
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Kutanan, W., Kampuansai, J., Srikummool, M., Brunelli, A., Ghirotto, S., Arias, L., Macholdt, E., Hübner, A., Schröder, R., & Stoneking, M. (2019). Contrasting paternal and maternal genetic histories of Thai and Lao populations. Molecular Biology and Evolution, 36(7): msz083, pp. 1490-1506.
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Laval, G., Peyrégne, S., Zidane, N., Harmant, C., Renaud, F., Patin, E., Prugnolle, F., & Quintana-Murci, L. (2019). Recent adaptive acquisition by African rainforest hunter-gatherers of the late Pleistocene sickle-cell mutation suggests past differences in malaria exposure. The American Journal of Human Genetics, 104(3), 553-561.
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Macholdt, E., Arias, L., Duong, N. T., Ton, N. D., Van Phong, N., Schröder, R., Pakendorf, B., Van Hai, N., & Stoneking, M. (2019). The paternal and maternal genetic history of Vietnamese populations. European Journal of Human Genetics, 28(5), 636-645.
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Mafessoni, F. (2019). Encounters with archaic hominins. Nature Ecology and Evolution, 3, 14-15.
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Mafessoni, F., & Lachmann, M. (2019). The complexity of understanding others as the evolutionary origin of empathy and emotional contagion. Scientific Reports, 9: 5794.
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Narasimhan, V. M., Patterson, N., Moorjani, P., Rohland, N., Bernardos, R., Mallick, S., Lazaridis, I., Nakatsuka, N., Olalde, I., Lipson, M., Kim, A. M., Olivieri, L. M., Coppa, A., Vidale, M., Mallory, J., Moiseyev, V., Kitov, E., Monge, J., Adamski, N., Alex, N., Broomandkhoshbacht, N., Candilio, F., Callan, K., Cheronet, O., Culleton, B. J., Ferry, M., Fernandes, D., Freilich, S., Gamarra, B., Gaudio, D., Hajdinjak, M., Harney, É., Harper, T. K., Keating, D., Lawson, A. M., Mah, M., Mandl, K., Michel, M., Novak, M., Oppenheimer, J., Rai, N., Sirak, K., Slon, V., Stewardson, K., Zalzala, F., Zhang, Z., Akhatov, G., Bagashev, A. N., Bagnera, A., Baitanayev, B., Bendezu-Sarmiento, J., Bissembaev, A. A., Bonora, G. L., Chargynov, T. T., Chikisheva, T., Dashkovskiy, P. K., Derevianko, A., Dobeš, M., Douka, K., Dubova, N., Duisengali, M. N., Enshin, D., Epimakhov, A., Fribus, A. V., Fuller, D., Goryachev, A., Gromov, A., Grushin, S. P., Hanks, B., Judd, M., Kazizov, E., Khokhlov, A., Krygin, A. P., Kupriyanova, E., Kuznetsov, P., Luiselli, D., Maksudov, F., Mamedov, A. M., Mamirov, T. B., Meiklejohn, C., Merrett, D. C., Micheli, R., Mochalov, O., Mustafokulov, S., Nayak, A., Pettener, D., Potts, R., Razhev, D., Rykun, M., Sarno, S., Savenkova, T. M., Sikhymbaeva, K., Slepchenko, S. M., Soltobaev, O. A., Stepanova, N., Svyatko, S., Tabaldiev, K., Teschler-Nicola, M., Tishkin, A. A., Tkachev, V. V., Vasilyev, S., Velemínský, P., Voyakin, D., Yermolayeva, A., Zahir, M., Zubkov, V. S., Zubova, A., Shinde, V. S., Lalueza-Fox, C., Meyer, M., Anthony, D., Boivin, N., Thangaraj, K., Kennett, D. J., Frachetti, M., Pinhasi, R., & Reich, D. (2019). The formation of human populations in South and Central Asia. Science, 365(6457): eaat7487.
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Nersisyan, L., Nikoghosyan, M., Arakelyan, A., Genome of the Netherlands Consortium, including authors, Stoneking, M., Li, M., & others (2019). WGS-based telomere length analysis in Dutch family trios implicates stronger maternal inheritance and a role for RRM1 gene. Scientific Reports, 9: 18758.
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Oliveira, S., Hübner, A., Fehn, A.-M., Aço, T., Lages, F., Pakendorf, B., Stoneking, M., & Rocha, J. (2019). The role of matrilineality in shaping patterns of Y chromosome and mtDNA sequence variation in southwestern Angola. European Journal of Human Genetics, 27, 475-483.
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Pääbo, S. (2019). Lessons from our inner Neanderthal: How extinct hominins live on in people today; the genomes of now-extinct archaic humans can help us understand more about what makes us modern-day humans truly unique. In S. Shuzhen, & B. Seet (Eds.), Sydney Brenner's 10-on-10: the chronicles of evolution (pp. 129-137). Singapore: Wildtype Books.
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Parra, R. G., Papadopoulos, N., Ahumada-Arranz, L., El Kholtei, J., Mottelson, N., Horokhovsky, Y., Treutlein, B., & Soeding, J. (2019). Reconstructing complex lineage trees from scRNA-seq data using MERLoT. Nucleic Acids Research, 47(17), 8961-8974.
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Petr, M., Pääbo, S., Kelso, J., & Vernot, B. (2019). Limits of long-term selection against Neandertal introgression. Proceedings of the National Academy of Sciences, 116(5), 1639-1644.
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Petr, M., Vernot, B., & Kelso, J. (2019). admixr – R package for reproducible analyses using ADMIXTOOLS. Bioinformatics, 35(17): btz030, pp. 3194-3195.
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Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., Conard, N. J., Kind, C. J., Posth, C., Krause, J., Abrams, G., Bonjean, D., Di Modica, K., Toussaint, M., Kelso, J., Meyer, M., Pääbo, S., & Prüfer, K. (2019). Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science Advances, 5(6): eaaw5873.
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Reher, D., Key, F. M., Andrés, A. M., & Kelso, J. (2019). Immune gene diversity in archaic and present-day humans. Genome Biology and Evolution, 11(1), 232-241.
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Riesenberg, S., Chintalapati, M., Macak, D., Kanis, P., Maricic, T., & Pääbo, S. (2019). Simultaneous precise editing of multiple genes in human cells. Nucleic Acids Research, 47(19): e116.
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Schmidt, J., de Manuel, M., Marques-Bonet, T., Castellano, S., & Andrés, A. M. (2019). The impact of genetic adaptation on chimpanzee subspecies differentiation. PLOS Genetics, 15(11), 1-32.
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Shinde, V., Narasimhan, V. M., Rohland, N., Mallick, S., Mah, M., Lipson, M., Nakatsuka, N., Adamski, N., Broomandkhoshbacht, N., Ferry, M., Lawson, A. M., Michel, M., Oppenheimer, J., Stewardson, K., Jadhav, N., Kim, Y. J., Chatterjee, M., Munshi, A., Panyam, A., Waghmare, P., Yadav, Y., Patel, H., Kaushik, A., Thangaraj, K., Meyer, M., Patterson, N., Rai, N., & Reich, D. (2019). An ancient Harappan genome lacks ancestry from Steppe pastoralists or Iranian farmers. Cell, 179(3), 729-735.e10.
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Shull, G., Haffner, C., Huttner, W. B., Kodandaramaiah, S. B., & Taverna, E. (2019). Robotic platform for microinjection into single cells in brain tissue. EMBO reports, 20(10): e47880.
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Shvetsova, E., Sofronova, A., Monajemi, R., Gagalova, K., Draisma, H. H. M., White, S. J., Santen, G. W. E., Chuva de Sousa Lopes, S. M., Heijmans, B. T., van Meurs, J., Jansen, R., Franke, L., Kielbasa, S. M., den Dunnen, J. T., ´t Hoen, P. A. C., BIOS consortium, GoNL consortium, including authors, Li, M., Stoneking, M., & & others (2019). Skewed X-inactivation is common in the general female population. European Journal of Human Genetics, 27, 455-465.
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Slon, V., & Pääbo, S. (2019). Rendezvous in der Steinzeit. In Highlights 2018 aus dem Jahrbuch der Max-Planck-Gesellschaft (pp. 32-34). München: Max-Planck-Gesellschaft zur Förderung der Wissenschaften e. V.
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Spataru, A., Le Duc, D., Zagrean, L., & Zagrean, A.-M. (2019). Ethanol exposed maturing rat cerebellar granule cells show impaired energy metabolism and increased cell death after oxygen-glucose deprivation. Neural Regeneration Research, 14(3), 485-490.
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Swift, J. A., Bunce, M., Dortch, J., Douglass, K., Faith, J. T., Fellows Yates, J. A., Field, J., Haberle, S. G., Jacob, E., Johnson, C. N., Lindsey, E., Lorenzen, E. D., Louys, J., Miller, G., Mychajliw, A. M., Slon, V., Villavicencio, N. A., Waters, M. R., Welker, F., Wood, R., Petraglia, M. D., Boivin, N., & Roberts, P. (2019). Micro methods for megafauna: novel approaches to late quaternary extinctions and their contributions to faunal conservation in the anthropocene. Bioscience, 69(11): biz105, pp. 877-887.
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Taverna, E., & Huttner, W. B. (2019). The Golgi apparatus in polarized neuroepithelial stem cells and their progeny: Canonical and noncanonical features. In M. Kloc (Ed.), The Golgi Apparatus and Centriole: Functions, Interactions and Role in Disease (pp. 359-375). Cham: Springer International Publishing.
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Tkachev, A., Stepanova, V., Zhang, L., Khrameeva, E., Zubkov, D., Giavalisco, P., & Khaitovich, P. (2019). Differences in lipidome and metabolome organization of prefrontal cortex among human populations. Scientific Reports, 9: 18348.
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Tyshkovskiy, A., Bozaykut, P., Borodinova, A. A., Gerashchenko, M. V., Ables, G. P., Garratt, M., Khaitovich, P., Clish, C. B., Miller, R. A., & Gladyshev, V. N. (2019). Identification and application of gene expression signatures associated with lifespan extension. Cell Metabolism, 30(3): e8, pp. 573-593.
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Vai, S., Sarno, S., Lari, M., Luiselli, D., Manzi, G., Gallinaro, M., Mataich, S., Hübner, A., Modi, A., Pilli, E., Tafuri, M. A., Caramelli, D., & di Lernia, S. (2019). Ancestral mitochondrial N lineage from the Neolithic ‘green’ Sahara. Scientific Reports, 9(1): 3530.
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Wiedenhoeft, J., Cagan, A., Kozhemyakina, R., Gulevich, R., & Schliep, A. (2019). Bayesian localization of CNV candidates in WGS data within minutes. Algorithms for Molecular Biology, 14: 20.
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Wren, J. D., Valencia, A., & Kelso, J. (2019). Reviewer-coerced citation: Case report, update on journal policy and suggestions for future prevention. Bioinformatics, 35(18), 3217-3218.
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2018

Arias, L., Barbieri, C., Barreto, G., Stoneking, M., & Pakendorf, B. (2018). High-resolution mitochondrial DNA analysis sheds light on human diversity, cultural interactions, and population mobility in Northwestern Amazonia. American Journal of Physical Anthropology, 165(2), 238-255.
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