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Johannes Krause

Department of Archaeogenetics
Max Planck Institute for Evolutionary Anthropology
Deutscher Platz 6
04103 Leipzig

phone: +49 341 3550 867
e-mail: krause@[>>> Please remove the text! <<<]eva.mpg.de

Curriculum Vitae
Publications

Curriculum Vitae

Prof. Dr. Johannes Krause (born in 1980) is a native of Thuringia. In 2008, he received his Ph.D. in Genetics at Leipzig University and the Max Planck Institute for Evolutionary Anthropology, Leipzig, where he was supervised by Svante Pääbo. He worked at the Max Planck Institute in Leipzig as a postdoc before he was appointed junior professor for Paleogenetics at the University of Tübingen in 2010 and subsequently full professor for Archaeo- and Paleogenetics at the same university in 2013. As one of the two founding directors of the Max Planck Institute for the Science of Human History in Jena, he headed the Department of Archaeogenetics from 2014 to 2020. In 2015 he was made an honorary professor for Archaeo- and Palaeogentics at the University of Tübingen. He is one of the founding directors of the Max Planck-Harvard Research Center for the Archaeoscience of the Ancient Mediterranean (MHAAM), established in 2017. In 2018 he became full professor for Archaeogenetics at the Institute of Zoology and Evolutionary Research, Friedrich Schiller University, Jena. In June 2020, Johannes Krause was reappointed as a director to the Max Planck Institute for Evolutionary Anthropology and his department moved to Leipzig.

Prof. Dr. Krause focuses on the analysis of ancient DNA to investigate such topics as pathogens from historic and prehistoric epidemics, human genetic history, and human evolution. He has also contributed to deciphering Neanderthal genetics and the shared genetic heritage of Neanderthals and modern humans. In 2010, while working at the Max Planck Institute for Evolutionary Anthropology in Leipzig, he discovered the first genetic evidence of the Denisovans, an extinct human species found in the Altai Mountains in Siberia. His recent work includes revealing the genetic heritage of ancient Egyptians, reconstructing the oldest modern human genome from Czech Republic, studying late Pleistocene genomes from Africa, Central Asia and Europe, uncovering the source of the epidemic plague bacteria that periodically caused historic and prehistoric epidemics in Eurasia, studying the evolution and genetic history of pathogens such as Mycobacterium leprae, M. tuberculosis, Treponema pallidum, Hepatitis B virus, Salmonella enterica, Helicobacter pylori and the Herpes virus, as well as clarifying the complex history of Western Eurasia’s prehistoric mass migrations. Prof. Dr. Krause has published more than 180 articles in peer-reviewed journals, including Nature, Science, Cell, Nature Reviews Genetics, PNAS, Nature Microbiology, Nature Communications.

Prof. Dr. Krause has given more than 300 invited presentations and his research has been featured in numerous television, radio, print and online media sources, including The New York Times, Washington Post, BBC, NPR, Discovery Channel, National Geographic, Zweites Deutsches Fernsehen, 3Sat, ARTE, Der Spiegel, FAS, FAZ, Die Zeit, Die Welt, Sueddeutsche Zeitung, Science, Nature, and considerably more. He was awarded the AAAS Newcomb Cleveland Prize in 2010 and the Thuringian Research Prize for Top Performance in Basic Research in 2017. In 2020 he received the Fabio Frassetto International Prize for Paleoanthropology. He is a member of the Heidelberg Academy of Sciences‘ WIN Kolleg, and a corresponding member of the Center for Academic Research & Training in Anthropogeny (CARTA) and the German Archeological Institute (DAI).

Curriculum Vitae Johannes Krause [PDF]

Publications

Artikel | Bücher | Buchkapitel

Artikel

191

Yu, H., Jamieson, A., Hulme-Beaman, A., Conroy, C. J., Knight, B., Speller, C., Al-Jarah, H., Eager, H., Trinks, A., Adikari, G., Baron, H., Böhlendorf-Arslan, B., Bohingamuwa, W., Crowther, A., Cucchi, T., Esser, K., Fleisher, J., Gidney, L., Gladilina, E., Gol’din, P., Goodman, S. M., Hamilton-Dyer, S., Helm, R., Hillman, J. C., Kallala, N., Kivikero, H., Kovács, Z. E., Kunst, G. K., Kyselý, R., Linderholm, A., Maraoui-Telmini, B., Marković, N., Morales-Muñiz, A., Nabais, M., O’Connor, T., Oueslati, T., Quintana Morales, E. M., Pasda, K., Perera, J., Perera, N., Radbauer, S., Ramon, J., Rannamäe, E., Sanmartí Grego, J., Treasure, E., Valenzuela-Lamas, S., van der Jagt, I., Van Neer, W., Vigne, J.-D., Walker, T., Wynne-Jones, S., Zeiler, J., Dobney, K., Boivin, N., Searle, J. B., Krause-Kyora, B., Krause, J., Larson, G., & Orton, D. (2022). Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history. Nature Communications, 13: 2399.
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190

Andrades Valtueña, A., Neumann, G., Spyrou, M. A., Musralina, L., Aron, F., Beisenov, A., Belinskiy, A. B., Bos, K. I., Buzhilova, A., Conrad, M., Djansugurova, L. B., Dobeš, M., Ernée, M., Fernández-Eraso, J., Frohlich, B., Furmanek, M., Hałuszko, A., Hansen, S., Harney, É., Hiß, A. N., Hübner, A., Key, F. M., Khussainova, E., Kitov, E., Kitova, A. O., Knipper, C., Kühnert, D., Lalueza-Fox, C., Littleton, J., Massy, K., Mittnik, A., Mujika-Alustiza, J. A., Olalde, I., Papac, L., Penske, S. E., Peška, J., Pinhasi, R., Reich, D., Reinhold, S., Stahl, R., Stäuble, H., Tukhbatova, R. I., Vasilyev, S., Veselovskaya, E., Warinner, C. G., Stockhammer, P. W., Haak, W., Krause, J., & Herbig, A. (2022). Stone AgeYersinia pestisgenomes shed light on the early evolution, diversity, and ecology of plague. Proceedings of the National Academy of Sciences of the United States of America, 119(17): 2116722119.
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189

Gnecchi-Ruscone, G. A., Szécsényi-Nagy, A., Koncz, I., Csiky, G., Rácz, Z., Rohrlach, A. B., Brandt, G., Rohland, N., Csáky, V., Cheronet, O., Szeifert, B., Rácz, T. Á., Benedek, A., Bernert, Z., Berta, N., Czifra, S., Dani, J., Farkas, Z., Hága, T., Hajdu, T., Jászberényi, M., Kisjuhász, V., Kolozsi, B., Major, P., Marcsik, A., Kovacsóczy, B. N., Balogh, C., Lezsák, G. M., Ódor, J. G., Szelekovszky, M., Szeniczey, T., Tárnoki, J., Tóth, Z., Tutkovics, E. K., Mende, B. G., Geary, P., Pohl, W., Vida, T., Pinhasi, R., Reich, D., Hofmanová, Z., Jeong, C., & Krause, J. (2022). Ancient genomes reveal origin and rapid trans-Eurasian migration of 7th century Avar elites (advance online). Cell, 185.
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188

Scott, A., Reinhold, S., Hermes, T., Kalmykov, A. A., Belinskiy, A., Buzhilova, A., Berezina, N., Kantorovich, A. R., Maslov, V. E., Guliyev, F., Lyonnet, B., Gasimov, P., Jalilov, B., Eminli, J., Iskandarov, E., Hammer, E., Nugent, S. E., Hagan, R., Majander, K., Onkamo, P., Nordqvist, K., Shishlina, N., Kaverzneva, E., Korolev, A. I., Khokhlov, A. A., Smolyaninov, R. V., Sharapova, S. V., Krause, R., Karapetian, M., Stolarczyk, E., Krause, J., Hansen, S., Haak, W., & Warinner, C. G. (2022). Emergence and intensification of dairying in the Caucasus and Eurasian steppes (advance online). Nature Ecology & Evolution.
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187

Ramstein, M., Steuri, N., Brönnimann, D., Rentzel, P., Cornelissen, M., Schimmelpfennig, D., Anselmetti, F. S., Häberle, S., Vandorpe, P., Siebke, I., Furtwängler, A., Szidat, S., Hafner, A., Krause, J., & Lösch, S. (2022). The well-preserved Late Neolithic dolmen burial of Oberbipp, Switzerland: construction, use, and post-depositional processes. Journal of Archaeological Science: Reports, 42: 103397.
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186

Moilanen, U., Kirkinen, T., Saari, N.-J., Rohrlach, A. B., Krause, J., Onkamo, P., & Salmela, E. (2022). A woman with a sword? – Weapon grave at Suontaka Vesitorninmäki, Finland. European Journal of Archaeology, 25(1), 42-60.
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185

Alpaslan-Roodenberg, S., Anthony, D., Babiker, H., Bánffy, E., Booth, T., Capone, P., Deshpande-Mukherjee, A., Eisenmann, S., Fehren-Schmitz, L., Frachetti, M., Fujita, R., Frieman, C. J., Fu, Q., Gibbon, V., Haak, W., Hajdinjak, M., Hofmann, K. P., Holguin, B., Inomata, T., Kanzawa-Kiriyama, H., Keegan, W., Kelso, J., Krause, J., Kumaresan, G., Kusimba, C., Kusimba, S., Lalueza-Fox, C., Llamas, B., MacEachern, S., Mallick, S., Matsumura, H., Morales-Arce, A. Y., Matuzeviciute, G. M., Mushrif-Tripathy, V., Nakatsuka, N., Nores, R., Ogola, C., Okumura, M., Patterson, N., Pinhasi, R., Prasad, S. P. R., Prendergast, M. E., Punzo, J. L., Reich, D., Sawafuji, R., Sawchuk, E., Schiffels, S., Sedig, J., Shnaider, S., Sirak, K., Skoglund, P., Slon, V., Snow, M., Soressi, M., Spriggs, M., Stockhammer, P. W., Szécsényi-Nagy, A., Thangaraj, K., Tiesler, V., Tobler, R., Wang, C.-C., Warinner, C., Yasawardene, S., & Zahir, M. (2021). Ethics of DNA research on human remains: Five globally applicable guidelines. Nature, 599, 41-46.
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184

Parker, C. E., Bos, K. I., Haak, W., & Krause, J. (2021). Optimized bone sampling protocols for the retrieval of ancient DNA from archaeological remains. Journal of Visualized Experiments, 177: e63250.
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183

Villalba-Mouco, V., Oliart, C., Rihuete-Herrada, C., Childebayeva, A., Rohrlach, A. B., Fregeiro, M. I., Beltrán, E. C., Velasco-Felipe, C., Aron, F., Himmel, M., Freund, C., Alt, K. W., Salazar-García, D. C., Atiénzar, G. G., de Ibáñez, M. P. M., Pérez, M. S. H., Barciela, V., Romero, A., Ponce, J., Martínez, A., Lomba, J., Soler, J., Martínez, A. P., Fernández, A. A., Haber-Uriarte, M., de Muñoz, C. R. T., Olalde, I., Lalueza-Fox, C., Reich, D., Krause, J., Sanjuán, L. G., Lull, V., Micó, R., Risch, R., & Haak, W. (2021). Genomic transformation and social organization during the Copper Age - Bronze age transition in Southern Iberia. Science Advances, 7(47): eabi7038.
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182

Zhang, F., Ning, C., Scott, A., Fu, Q., Bjorn, R., Li, W., Wei, D., Wang, W., Fan, L., Abuduresule, I., Hu, X., Ruan, Q., Niyazi, A., Dong, G., Cao, P., Liu, F., Dai, Q., Feng, X., Yang, R., Tang, Z., Ma, P., Li, C., Gao, S., Xu, Y., Wu, S., Wen, S., Zhu, H., Zhou, H., Robbeets, M., Kumar, V., Krause, J., Warinner, C. G., Jeong, C., & Cui, Y. (2021). The genomic origins of the Bronze Age Tarim Basin mummies. Nature, 599(7884), 256-261.
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181

Librado, P., Khan, N., Fages, A., Kusliy, M. A., Suchan, T., Tonasso-Calvière, L., Schiavinato, S., Alioglu, D., Fromentier, A., Perdereau, A., Aury, J.-M., Gaunitz, C., Chauvey, L., Seguin-Orlando, A., Der Sarkissian, C., Southon, J., Shapiro, B., Tishkin, A. A., Kovalev, A. A., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Seregély, T., Klassen, L., Iversen, R., Bignon-Lau, O., Bodu, P., Olive, M., Castel, J.-C., Boudadi-Maligne, M., Alvarez, N., Germonpré, M., Moskal-del Hoyo, M., Wilczyński, J., Pospuła, S., Lasota-Kuś, A., Tunia, K., Nowak, M., Rannamäe, E., Saarma, U., Boeskorov, G., Lōugas, L., Kyselý, R., Peške, L., Bălășescu, A., Dumitrașcu, V., Dobrescu, R., Gerber, D., Kiss, V., Szécsényi-Nagy, A., Mende, B. G., Gallina, Z., Somogyi, K., Kulcsár, G., Gál, E., Bendrey, R., Allentoft, M. E., Sirbu, G., Dergachev, V., Shephard, H., Tomadini, N., Grouard, S., Kasparov, A., Basilyan, A. E., Anisimov, M. A., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V., Brem, G., Wallner, B., Schwall, C., Keller, M., Kitagawa, K., Bessudnov, A. N., Bessudnov, A., Taylor, W., Magail, J., Gantulga, J.-O., Bayarsaikhan, J., Erdenebaatar, D., Tabaldiev, K., Mijiddorj, E., Boldgiv, B., Tsagaan, T., Pruvost, M., Olsen, S., Makarewicz, C. A., Valenzuela Lamas, S., Albizuri Canadell, S., Nieto Espinet, A., Iborra, M. P., Lira Garrido, J., Rodríguez González, E., Celestino, S., Olària, C., Arsuaga, J. L., Kotova, N., Pryor, A., Crabtree, P., Zhumatayev, R., Toleubaev, A., Morgunova, N. L., Kuznetsova, T., Lordkipanize, D., Marzullo, M., Prato, O., Bagnasco Gianni, G., Tecchiati, U., Clavel, B., Lepetz, S., Davoudi, H., Mashkour, M., Berezina, N. Y., Stockhammer, P. W., Krause, J., Haak, W., Morales-Muñiz, A., Benecke, N., Hofreiter, M., Ludwig, A., Graphodatsky, A. S., Peters, J., Kiryushin, K. Y., Iderkhangai, T.-O., Bokovenko, N. A., Vasiliev, S. K., Seregin, N. N., Chugunov, K. V., Plasteeva, N. A., Baryshnikov, G. F., Petrova, E., Sablin, M., Ananyevskaya, E., Logvin, A., Shevnina, I., Logvin, V., Kalieva, S., Loman, V., Kukushkin, I., Merz, I., Merz, V., Sakenov, S., Varfolomeyev, V., Usmanova, E., Zaibert, V., Arbuckle, B., Belinskiy, A. B., Kalmykov, A., Reinhold, S., Hansen, S., Yudin, A. I., Vybornov, A. A., Epimakhov, A., Berezina, N. S., Roslyakova, N., Kosintsev, P. A., Kuznetsov, P. F., Anthony, D., Kroonen, G. J., Kristiansen, K., Wincker, P., Outram, A., & Orlando, L. (2021). The origins and spread of domestic horses from the Western Eurasian steppes. Nature, 598, 634-640.
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180

Kocher, A., Papac, L., Barquera, R., Key, F. M., Spyrou, M. A., Hübler, R., Rohrlach, A. B., Aron, F., Stahl, R., Wissgott, A., van Bömmel, F., Pfefferkorn, M., Mittnik, A., Villalba-Mouco, V., Neumann, G. U., Rivollat, M., van de Loosdrecht, M. S., Majander, K., Tukhbatova, R. I., Musralina, L., Ghalichi, A., Penske, S., Sabin, S., Michel, M., Gretzinger, J., Nelson, E. A., Ferraz, T., Nägele, K., Parker, C., Keller, M., Guevara, E. K., Feldman, M., Eisenmann, S., Skourtanioti, E., Giffin, K., Gnecchi-Ruscone, G. A., Friederich, S., Schimmenti, V., Khartanovich, V., Karapetian, M. K., Chaplygin, M. S., Kufterin, V. V., Khokhlov, A. A., Chizhevsky, A. A., Stashenkov, D. A., Kochkina, A. F., Tejedor-Rodríguez, C., de Lagrán, Í.-G.-M., Arcusa-Magallón, H., Garrido-Pena, R., Royo-Guillén, J. I., Novácek, J., Rottier, S., Kacki, S., Saintot, S., Kaverzneva, E., Belinskiy, A. B., Velemínský, P., Limburský, P., Kostka, M., Loe, L., Popescu, E., Clarke, R., Lyons, A., Mortimer, R., Sajantila, A., de Armas, Y. C., Godoy, S. T. H., Hernández-Zaragoza, D. I., Pearson, J., Binder, D., Lefranc, P., Kantorovich, A. R., Maslov, V. E., Lai, L., Zoledziewska, M., Beckett, J. F., Langová, M., Danielisová, A., Ingman, T., Atiénzar, G. G., de Ibáñez, M. P. M., Romero, A., Sperduti, A., Beckett, S., Salter, S. J., Zilivinskaya, E. D., Vasilev, D. V., von Heyking, K., Burger, R. L., Salazar, L. C., Amkreutz, L., Navruzbekov, M., Rosenstock, E., Alonso-Fernández, C., Slavchev, V., Kalmykov, A. A., Atabiev, B. C., Batieva, E., Calmet, M. A., Llamas, B., Schultz, M., Krauß, R., Jiménez-Echevarría, J., Francken, M., Shnaider, S., de Knijff, P., Altena, E., de Vijver, K. V., Fehren-Schmitz, L., Tung, T. A., Lösch, S., Dobrovolskaya, M., Makarov, N., Read, C., Twest, M. V., Sagona, C., Ramsl, P. C., Akar, M., Yener, K. A., Ballestero, E. C., Cucca, F., Mazzarello, V., Utrilla, P., Rademaker, K., Fernández-Domínguez, E., Baird, D., Semal, P., Márquez-Morfín, L., Roksandic, M., Steiner, H., Salazar-García, D. C., Shishlina, N., Erdal, Y. S., Hallgren, F., Boyadzhiev, Y., Boyadzhiev, K., Küßner, M., Sayer, D., Onkamo, P., Skeates, R., Rojo-Guerra, M., Buzhilova, A., Khussainova, E., Djansugurova, L. B., Beisenov, A. Z., Samashev, Z., Massy, K., Mannino, M., Moiseyev, V., Mannermaa, K., Balanovsky, O., Deguilloux, M.-F., Reinhold, S., Hansen, S., Kitov, E. P., Dobeš, M., Ernée, M., Meller, H., Alt, K. W., Prüfer, K., Warinner, C., Schiffels, S., Stockhammer, P. W., Bos, K., Posth, C., Herbig, A., Haak, W., Krause, J., & Kühnert, D. (2021). Ten millennia of hepatitis B virus evolution. Science, 374(6564), 182-188.
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179

Pfrengle, S., Neukamm, J., Guellil, M., Keller, M., Molak, M., Avanzi, C., Kushniarevich, A., Montes, N., Neumann, G. U., Reiter, E., Tukhbatova, R. I., Berezina, N. Y., Buzhilova, A. P., Korobov, D. S., Suppersberger Hamre, S., Matos, V. M. J., Ferreira, M. T., González-Garrido, L., Wasterlain, S. N., Lopes, C., Santos, A. L., Antunes-Ferreira, N., Duarte, V., Silva, A. M., Melo, L., Sarkic, N., Saag, L., Tambets, K., Busso, P., Cole, S. T., Avlasovich, A., Roberts, C. A., Sheridan, A., Cessford, C., Robb, J., Krause, J., Scheib, C. L., Inskip, S. A., & Schuenemann, V. J. (2021). Mycobacterium leprae diversity and population dynamics in medieval Europe from novel ancient genomes. BMC Biology, 19: 220.
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178

Immel, A., Key, F. M., Szolek, A., Barquera, R., Robinson, M. K., Harrison, G. F., Palmer, W. H., Spyrou, M. A., Susat, J., Krause-Kyora, B., Bos, K. I., Forrest, S., Hernández-Zaragoza, D. I., Sauter, J., Solloch, U., Schmidt, A. H., Schuenemann, V. J., Reiter, E., Kairies, M. S., Weiß, R., Arnold, S., Wahl, J., Hollenbach, J. A., Kohlbacher, O., Herbig, A., Norman, P. J., & Krause, J. (2021). Analysis of genomic DNA from medieval plague victims suggests long-term effect of Yersinia pestis on human immunity genes. Molecular Biology and Evolution, 38(10), 4059-4076.
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177

Suchan, T., Kusliy, M. A., Khan, N., Chauvey, L., Tonasso-Calvière, L., Schiavinato, S., Southon, J., Keller, M., Kitagawa, K., Krause, J., Bessudnov, A. N., Bessudnov, A. A., Graphodatsky, A. S., Valenzuela-Lamas, S., Wilczyński, J., Pospuła, S., Tunia, K., Nowak, M., Moskal-delHoyo, M., Tishkin, A. A., Pryor, A. J. E., Outram, A. K., & Orlando, L. (2021). Performance and automation of ancient DNA capture with RNA hyRAD probes. Molecular Ecology Resources, 22(3): 13518, pp. 891-907.
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176

Wang, C.-C., Posth, C., Furtwängler, A., Sümegi, K., Bánfai, Z., Kásler, M., Krause, J., & Melegh, B. (2021). Genome-wide autosomal, mtDNA, and Y chromosome analysis of King Bela III of the Hungarian Arpad dynasty. Scientific Reports, 11: 19210.
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175

Liu, Y., Mao, X., Krause, J., & Fu, Q. (2021). Insights into human history from the first decade of ancient human genomics. Science, 373(6562), 1479-1484.
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174

Posth, C., Zaro, V., Spyrou, M. A., Vai, S., Gnecchi-Ruscone, G. A., Modi, A., Peltzer, A., Mötsch, A., Nägele, K., Vågene, Å. J., Nelson, E. A., Radzevičiūtė, R., Freund, C., Bondioli, L. M., Cappuccini, L., Frenzel, H., Pacciani, E., Boschin, F., Capecchi, G., Martini, I., Moroni, A., Ricci, S., Sperduti, A., Turchetti, M. A., Riga, A., Zavattaro, M., Zifferero, A., Heyne, H. O., Fernández-Domínguez, E., Kroonen, G. J., McCormick, M., Haak, W., Lari, M., Barbujani, G., Bondioli, L., Bos, K. I., Caramelli, D., & Krause, J. (2021). The origin and legacy of the Etruscans through a 2000-year archeogenomic time transect. Science Advances, 7(39): eabi7673.
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173

Wu, X., Ning, C., Key, F. M., Andrades Valtueña, A., Lankapalli, A. K., Gao, S., Yang, X., Zhang, F., Liu, L., Nie, Z., Ma, J., Krause, J., Herbig, A., & Cui, Y. (2021). A 3,000-year-old, basal S. enterica lineage from Bronze Age Xinjiang suggests spread along the Proto-Silk Road. PLoS Pathogens, 17: e1009886.
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172

Carlhoff, S., Duli, A., Nägele, K., Nur, M., Skov, L., Sumantri, I., Oktaviana, A. A., Hakim, B., Burhan, B., Syahdar, F. A., McGahan, D. P., Bulbeck, D., Perston, Y. L., Newman, K., Saiful, A. M., Ririmasse, M., Chia, S., Hasanuddin, Pulubuhu, D. A. T., Suryatman, Supriadi, Jeong, C., Peter, B. M., Prüfer, K., Powell, A., Krause, J., Posth, C., & Brumm, A. (2021). Genome of a middle Holocene hunter-gatherer from Wallacea. Nature, 596, 543-547.
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171

Papac, L., Ernée, M., Dobeš, M., Langová, M., Rohrlach, A. B., Aron, F., Neumann, G. U., Spyrou, M. A., Rohland, N., Velemínský, P., Kuna, M., Brzobohatá, H., Culleton, B., Daněček, D., Danielisová, A., Dobisíková, M., Hložek, J., Kennett, D. J., Klementová, J., Kostka, M., Krištuf, P., Kuchařík, M., Hlavová, J. K., Limburský, P., Malyková, D., Mattiello, L., Pecinovská, M., Petriščáková, K., Průchová, E., Stránská, P., Smejtek, L., Špaček, J., Šumberová, R., Švejcar, O., Trefný, M., Vávra, M., Kolář, J., Heyd, V., Krause, J., Pinhasi, R., Reich, D., Schiffels, S., & Haak, W. (2021). Dynamic changes in genomic and social structures in third millennium BCE central Europe. Science Advances, 7(35): eabi6941.
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170

Ingman, T., Eisenmann, S., Skourtanioti, E., Akar, M., Ilgner, J., Gnecchi Ruscone, G. A., le Roux, P., Shafiq, R., Neumann, G. U., Keller, M., Freund, C., Marzo, S., Lucas, M., Krause, J., Roberts, P., Yener, K. A., & Stockhammer, P. W. (2021). Human mobility at Tell Atchana (Alalakh), Hatay, Turkey during the 2nd millennium BC: Integration of isotopic and genomic evidence. PLoS One, 16(6): e0241883.
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169

Pohl, W., Krause, J., Vida, T., & Geary, P. (2021). Integrating genetic, archaeological, and historical perspectives on Eastern Central Europe, 400–900 AD: Brief description of the ERC Synergy Grant – HistoGenes 8564531. Historical Studies on Central Europe, 1(1): 1.09, pp. 213-228.
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168

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Orlando, L., Allaby, R., Skoglund, P., Sarkissian, C. D., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., & Warinner, C. G. (2021). Ancient DNA analysis. Nature reviews: Methods primers, 1(14): s43586-020-00011-0.
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Fellows Yates, J. A., Velsko, I. M., Aron, F., Posth, C., Hofman, C. A., Austin, R. M., Parker, C. E., Mann, A. E., Nägele, K., Arthur, K. W., Arthur, J. W., Bauer, C. C., Crevecoeur, I., Cupillard, C., Curtis, M. C., Dalén, L., Díaz-Zorita Bonilla, M., Díez Fernández-Lomana, J. C., Drucker, D. G., Escribano Escrivá, E., Francken, M., Gibbon, V. E., González Morales, M. R., Grande Mateu, A., Harvati, K., Henry, A. G., Humphrey, L., Menéndez, M., Mihailović, D., Peresani, M., Rodríguez Moroder, S., Roksandic, M., Rougier, H., Sázelová, S., Stock, J. T., Straus, L. G., Svoboda, J., Teßmann, B., Walker, M. J., Power, R. C., Lewis, C. M., Sankaranarayanan, K., Guschanski, K., Wrangham, R. W., Dewhirst, F. E., Salazar-García, D. C., Krause, J., Herbig, A., & Warinner, C. G. (2021). The evolution and changing ecology of the African hominid oral microbiome. Proceedings of the National Academy of Sciences, 118(20): e2021655118.
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Haller, M., Callan, K., Susat, J., Flux, A. L., Immel, A., Franke, A., Herbig, A., Krause, J., Kupczok, A., Fouquet, G., Hummel, S., Rieger, D., Nebel, A., & Krause-Kyora, B. (2021). Mass burial genomics reveals outbreak of enteric paratyphoid fever in the Late Medieval trade city Lübeck. iScience, 24(5): 102419.
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Immel, A., Pierini, F., Rinne, C., Meadows, J., Barquera, R., Szolek, A., Susat, J., Böhme, L., Dose, J., Bonczarowska, J., Drummer, C., Fuchs, K., Ellinghaus, D., Kässens, J. C., Furholt, M., Kohlbacher, O., Schade-Lindig, S., Franke, A., Schreiber, S., Krause, J., Müller, J., Lenz, T. L., Nebel, A., & Krause-Kyora, B. (2021). Genome-wide study of a Neolithic Wartberg grave community reveals distinct HLA variation and hunter-gatherer ancestry. Communications Biology, 4: 113.
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Lösch, S., Ramstein, M., Hafner, A., & Krause, J. (2021). Oberbipp - Ein neolithischer Dolmen im Oberaargau, die Toten und was wir über sie wissen. AS: Archäologie Schweiz: Mitteilungsblatt von "Archäologie Schweiz" = Archéologie Suisse: Bulletin d'"Archéologie Suisse" = Archeologia Svizzera: Bollettino di "Archeologia Svizzera", 44(1), 4-15.
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Prüfer, K., Posth, C., Yu, H., Stoessel, A., Spyrou, M. A., Deviese, T., Mattonai, M., Ribechini, E., Higham, T., Velemínský, P., Brůžek, J., & Krause, J. (2021). A genome sequence from a modern human skull over 45,000 years old from Zlatý kůň in Czechia. Nature Ecology & Evolution, 5, 820-825.
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Rohrlach, A. B., Papac, L., Childebayeva, A., Rivollat, M., Villalba-Mouco, V., Neumann, G. U., Penske, S., Skourtanioti, E., Loosdrecht, M. v. d., Akar, M., Boyadzhiev, K., Boyadzhiev, Y., Deguilloux, M.-F., Dobeš, M., Erdal, Y. S., Ernée, M., Frangipane, M., Furmanek, M., Friederich, S., Ghesquière, E., Hałuszko, A., Hansen, S., Küßner, M., Mannino, M., Özbal, R., Reinhold, S., Rottier, S., Salazar-García, D. C., Diaz, J. S., Stockhammer, P. W., de Muñoz, T., Roca, C., Yener, K. A., Posth, C., Krause, J., Herbig, A., & Haak, W. (2021). Using Y-chromosome capture enrichment to resolve haplogroup H2 shows new evidence for a two-path Neolithic expansion to Western Europe. Scientific Reports, 11: 15005.
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Wang, C.-C., Yeh, H.-Y., Popov, A. N., Zhang, H.-Q., Matsumura, H., Sirak, K., Cheronet, O., Kovalev, A., Rohland, N., Kim, A. M., Mallick, S., Bernardos, R., Tumen, D., Zhao, J., Liu, Y.-C., Liu, J.-Y., Mah, M., Wang, K., Zhang, Z., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Carlson, K. S. D., Culleton, B. J., Eccles, L., Freilich, S., Keating, D., Lawson, A. M., Mandl, K., Michel, M., Oppenheimer, J., Özdoğan, K. T., Stewardson, K., Wen, S., Yan, S., Zalzala, F., Chuang, R., Huang, C.-J., Looh, H., Shiung, C.-C., Nikitin, Y. G., Tabarev, A. V., Tishkin, A. A., Lin, S., Sun, Z.-Y., Wu, X.-M., Yang, T.-L., Hu, X., Chen, L., Du, H., Bayarsaikhan, J., Mijiddorj, E., Erdenebaatar, D., Iderkhangai, T.-O., Myagmar, E., Kanzawa-Kiriyama, H., Nishino, M., Shinoda, K.-i., Shubina, O. A., Guo, J., Cai, W., Deng, Q., Kang, L., Li, D., Li, D., Lin, R., Nini, Shrestha, R., Wang, L.-X., Wei, L., Xie, G., Yao, H., Zhang, M., He, G., Yang, X., Hu, R., Robbeets, M., Schiffels, S., Kennett, D. J., Jin, L., Li, H., Krause, J., Pinhasi, R., & Reich, D. (2021). Genomic insights into the formation of human populations in East Asia. Nature, 591, 413-419.
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Furtwängler, A., Neukamm, J., Böhme, L., Reiter, E., Vollstedt, M., Arora, N., Singh, P., Cole, S. T., Knauf, S., Calvignac-Spencer, S., Krause-Kyora, B., Krause, J., Schuenemann, V. J., & Herbig, A. (2020). Comparison of target enrichment strategies for ancient pathogen DNA. Biotechniques, 69(6), 455-459.
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McDonald, S. K., Matisoo-Smith, E. A., Buckley, H. R., Walter, R. K., Aung, H. L., Collins, C. J., Cook, G. M., Kardailsky, O., Krause, J., & Knapp, M. (2020). 'TB or not TB': The conundrum of pre-European contact tuberculosis in the Pacific. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 375(1812): 20190583.
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Jeong, C., Wang, K., Wilkin, S., Taylor, W. T. T., Miller, B. K., Bemmann, J. H., Stahl, R., Chiovelli, C., Knolle, F., Ulziibayar, S., Khatanbaatar, D., Erdenebaatar, D., Erdenebat, U., Ochir, A., Ankhsanaa, G., Vanchigdash, C., Ochir, B., Munkhbayar, C., Tumen, D., Kovalev, A., Kradin, N., Bazarov, B. A., Miyagashev, D. A., Konovalov, P. B., Zhambaltarova, E., Ventresca Miller, A. R., Haak, W., Schiffels, S., Krause, J., Boivin, N. L., Erdene, M., Hendy, J., & Warinner, C. G. (2020). A dynamic 6,000-year genetic history of Eurasia’s eastern steppe. Cell, 183(4), 890-904.e29.
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Forth, J. H., Forth, L. F., Lycett, S., Bell-Sakyi, L., Keil, G. M., Blome, S., Calvignac-Spencer, S., Wissgott, A., Krause, J., Höper, D., Kampen, H., & Beer, M. (2020). Identification of African swine fever virus-like elements in the soft tick genome provides insights into the virus’ evolution. BMC Biology, 18(1): 136.
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Key, F. M., Posth, C., Esquivel-Gomez, L. R., Hübler, R., Spyrou, M. A., Neumann, G., Furtwängler, A., Sabin, S., Burri, M., Wissgott, A., Lankapalli, A. K., Vågene, Å. J., Meyer, M., Nagel, S., Tukhbatova, R. I., Khokhlov, A., Chizhevsky, A., Hansen, S., Belinsky, A. B., Kalmykov, A., Kantorovich, A. R., Maslov, V. E., Stockhammer, P. W., Vai, S., Zavattaro, M., Riga, A., Caramelli, D., Skeates, R., Beckett, J., Gradoli, M. G., Steuri, N., Hafner, A., Ramstein, M., Siebke, I., Lösch, S., Erdal, Y. S., Alikhan, N.-F., Zhou, Z., Achtman, M., Bos, K. I., Reinhold, S., Haak, W., Kühnert, D., Herbig, A., & Krause, J. (2020). Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution, 4, 324-333.
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Siebke, I., Furtwängler, A., Steuri, N., Hafner, A., Ramstein, M., Krause, J., & Lösch, S. (2020). Crops vs. animals: Regional differences in subsistence strategies of Swiss Neolithic farmers revealed by stable isotopes. Archaeological and Anthropological Sciences, 12(10): 235.
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Barquera, R., Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Arrieta-Bolaños, E., Clayton, S., Acuña-Alonzo, V., Martínez-Álvarez, J. C., López-Gil, C., Adalid-Sáinz, C., Vega-Martínez, M. d. R., Escobedo-Ruíz, A., Juárez-Cortés, E. D., Immel, A., Pacheco-Ubaldo, H., González-Medina, L., Lona-Sánchez, A., Lara-Riegos, J., Sánchez-Fernández, M. G. d. J., Díaz-López, R., Guizar-López, G. U., Medina-Escobedo, C. E., Arrazola-García, M. A., Montiel-Hernández, G. D., Hernández-Hernández, O., la Cruz, R.-d., Rocío, F. d., Juárez-Nicolás, F., Pantoja-Torres, J. A., Rodríguez-Munguía, T. J., Juárez-Barreto, V., Delgado-Aguirre, H., Escutia-González, A. B., Goné-Vázquez, I., Benítez-Arvizu, G., Arellano-Prado, F. P., García-Arias, V. E., Rodríguez-López, M. E., Méndez-Mani, P., García-Álvarez, R., González-Martínez, M. d. R., Aquino-Rubio, G., Escareño-Montiel, N., Vázquez-Castillo, T. V., Uribe-Duarte, M. G., Ruíz-Corral, M. d. J., Ortega-Yáñez, A., Bernal-Felipe, N., Gómez-Navarro, B., Arriaga-Perea, A. J., Martínez-Bezies, V., Macías-Medrano, R. M., Aguilar-Campos, J. A., Solís-Martínez, R., Serrano-Osuna, R., Sandoval-Sandoval, M. J., Jaramillo-Rodríguez, Y., Salgado-Adame, A., Juárez-de la Cruz, F., Novelo-Garza, B., Pavón-Vargas, M. d. l. Á., Salgado-Galicia, N., Bortolini, M. C., Gallo, C., Bedoya, G., Rothhammer, F., González-José, R., Ruiz-Linares, A., Canizales-Quinteros, S., Romero-Hidalgo, S., Krause, J., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). The immunogenetic diversity of the HLA system in Mexico correlates with underlying population genetic structure. Human Immunology, 81(9): 2020.06.008, pp. 461-474.
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Fischer, M. S., Hoßfeld, U., Krause, J., & Richter, S. (2020). Jena, Haeckel und die Frage nach den Menschenrassen oder der Rassismus macht Rassen. Zoologie: Mitteilungen der Deutschen Zoologischen Gesellschaft, 2020, 7-32.
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Neukamm, J., Pfrengle, S., Molak, M., Seitz, A., Francken, M., Eppenberger, P., Avanzi, C., Reiter, E., Urban, C., Welte, B., Stockhammer, P. W., Teßmann, B., Herbig, A., Harvati, K., Nieselt, K., Krause, J., & Schuenemann, V. J. (2020). 2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. BMC Biology, 18(1): 108.
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Majander, K., Pfrengle, S., Kocher, A., Neukamm, J., du Plessis, L., Pla-Díaz, M., Arora, N., Akgül, G., Salo, K., Schats, R., Inskip, S., Oinonen, M., Valk, H., Malve, M., Kriiska, A., Onkamo, P., González-Candelas, F., Kühnert, D., Krause, J., & Schuenemann, V. J. (2020). Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology, 30: 2020.07.058, pp. 1-16.
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Barquera, R., & Krause, J. (2020). An ancient view on host pathogen interaction across time and space. Current Opinion in Immunology, 65, 65-69.
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Nägele, K., Posth, C., Iraeta Orbegozo, M., Chinique de Armas, Y., Hernández Godoy, S. T., Gonzáles Herrera, U. M., Nieves-Colón, M. A., Sandoval-Velasco, M., Mylopotamitaki, D., Radzeviciute, R., Laffoon, J., Pestle, W. J., Ramos-Madrigal, J., Lamnidis, T. C., Schaffer, W. C., Carr, R. S., Day, J. S., Arredondo Antúnez, C., Rangel Rivero, A., Martínez-Fuentes, A. J., Crespo-Torres, E., Roksandic, I., Stone, A. C., Lalueza-Fox, C., Hoogland, M., Roksandic, M., Hofman, C. L., Krause, J., & Schroeder, H. (2020). Genomic insights into the early peopling of the Caribbean. Science, 369(6502), 456-460.
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Wang, K., Goldstein, S. T., Bleasdale, M., Clist, B., Bostoen, K., Bakwa-Lufu, P., Buck, L. T., Crowther, A., Dème, A., McIntosh, R. J., Mercader, J., Ogola, C., Power, R. C., Sawchuk, E. A., Robertshaw, P., Wilmsen, E. N., Petraglia, M. D., Ndiema, E., Manthi, F. K., Krause, J., Roberts, P., Boivin, N. L., & Schiffels, S. (2020). Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa. Science Advances, 6(24): eaaz0183.
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Yu, H., Spyrou, M. A., Karapetian, M., Shnaider, S., Radzeviciute, R., Nägele, K., Neumann, G. U., Penske, S. E., Zech, J., Lucas, M., LeRoux, P., Roberts, P., Pavlenok, G., Buzhilova, A., Posth, C., Jeong, C., & Krause, J. (2020). Paleolithic to Bronze Age Siberians reveal connections with first Americans and across Eurasia. Cell, 181(6), 1232-1245.e20.
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Barquera, R., Lamnidis, T. C., Lankapalli, A. K., Kocher, A., Hernández-Zaragoza, D. I., Nelson, E. A., Zamora-Herrera, A. C., Perez Ramallo, P., Bernal-Felipe, N., Immel, A., Bos, K., Acuña-Alonzo, V., Barbieri, C., Roberts, P., Herbig, A., Kühnert, D., Márquez-Morfín, L., & Krause, J. (2020). Origin and health status of first-generation Africans from early colonial Mexico. Current Biology, 30(11): 2020.04.002, pp. 2078-2091.e11.
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Ning, C., Li, T., Wang, K., Zhang, F., Li, T., Wu, X., Gao, S., Zhang, Q., Zhang, H., Hudson, M., Dong, G., Wu, S., Fang, Y., Liu, C., Feng, C., Li, W., Han, T., Li, R., Wei, J., Zhu, Y., Zhou, Y., Wang, C.-C., Fan, S., Xiong, Z., Sun, Z., Ye, M., Sun, L., Wu, X., Liang, F., Cao, Y., Wei, X., Zhu, H., Zhou, H., Krause, J., Robbeets, M., Jeong, C., & Cui, Y. (2020). Ancient genomes from northern China suggest links between subsistence changes and human migration. Nature Communications, 11: 2700.
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Rivollat, M., Jeong, C., Schiffels, S., Kücükkalıpcı, İ., Pemonge, M.-H., Rohrlach, A. B., Alt, K. W., Binder, D., Friederich, S., Ghesquière, E., Gronenborn, D., Laporte, L., Lefranc, P., Meller, H., Réveillas, H., Rosenstock, E., Rottier, S., Scarre, C., Soler, L., Wahl, J., Krause, J., Deguilloux, M.-F., & Haak, W. (2020). Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers. Science Advances, 6(22): eaaz5344.
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Skourtanioti, E., Erdal, Y. S., Frangipane, M., Balossi Restelli, F., Yener, K. A., Pinnock, F., Matthiae, P., Özbal, R., Schoop, U.-D., Guliyev, F., Akhundov, T., Lyonnet, B., Hammer, E. L., Nugent, S. E., Burri, M., Neumann, G. U., Penske, S. E., Ingman, T., Akar, M., Shafiq, R., Palumbi, G., Eisenmann, S., D’Andrea, M., Rohrlach, A. B., Warinner, C., Jeong, C., Stockhammer, P. W., Haak, W., & Krause, J. (2020). Genomic history of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus. Cell, 181(5), 1158-1175.e28.
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Parker, E. C., Rohrlach, A. B., Friederich, S., Nagel, S., Meyer, M., Krause, J., Bos, K. I., & Haak, W. (2020). A systematic investigation of human DNA preservation in medieval skeletons. Scientific Reports, 10(1): 18225.
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Loog, L., Thalmann, O., Sinding, M.-H.-S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E.-L., Fedorov, S., Gasparyan, B., Kandel, A. W., Lázničková-Galetová, M., Napierala, H., Uerpmann, H.-P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K.-H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A., & Manica, A. (2020). Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology, 29(9): 15329, pp. 1596-1610.
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Musralina, L. Z., Djansugurova, L. B., & Krause, J. (2020). Features of the study of ancient pathogens. Журнал проблем эволюции открытых систем, 22(1), 83-89.
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Nakatsuka, N., Lazaridis, I., Barbieri, C., Skoglund, P., Rohland, N., Mallick, S., Posth, C., Harkins-Kinkaid, K., Ferry, M., Harney, É., Michel, M., Stewardson, K., Novak-Forst, J., Capriles, J. M., Durruty, M. A., Álvarez, K. A., Beresford-Jones, D., Burger, R., Cadwallader, L., Fujita, R., Isla, J., Lau, G., Aguirre, C. L., LeBlanc, S., Maldonado, S. C., Meddens, F., Messineo, P. G., Culleton, B. J., Harper, T. K., Quilter, J., Politis, G., Rademaker, K., Reindel, M., Rivera, M., Salazar, L., Sandoval, J. R., Santoro, C. M., Scheifler, N., Standen, V., Barreto, M. I., Espinoza, I. F., Tomasto-Cagigao, E., Valverde, G., Kennett, D. J., Cooper, A., Krause, J., Haak, W., Llamas, B., Reich, D., & Fehren-Schmitz, L. (2020). A paleogenomic reconstruction of the deep population history of the Ande. Cell, 181(5): 2020.04.015, pp. 1131-1145.e21.
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Furtwängler, A., Rohrlach, A. B., Lamnidis, T. C., Papac, L., Neumann, G., Siebke, I., Reiter, E., Steuri, N., Hald, J., Denaire, A., Schnitzler, B., Wahl, J., Ramstein, M., Schuenemann, V. J., Stockhammer, P. W., Hafner, A., Lösch, S., Haak, W., Schiffels, S., & Krause, J. (2020). Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature Communications, 11: 1915.
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Marcus, J. H., Posth, C., Ringbauer, H., Lai, L., Skeates, R., Sidore, C., Beckett, J., Furtwängler, A., Olivieri, A., Chiang, C. W. K., Al-Asadi, H., Dey, K., Joseph, T. A., Liu, C.-C., Der Sarkissian, C., Radzeviciute, R., Michel, M., Gradoli, M. G., Marongiu, P., Rubino, S., Mazzarello, V., Rovina, D., La Fragola, A., Serra, R. M., Bandiera, P., Bianucci, R., Pompianu, E., Murgia, C., Guirguis, M., Orquin, R. P., Tuross, N., van Dommelen, P., Haak, W., Reich, D., Schlessinger, D., Cucca, F., Krause, J., & Novembre, J. (2020). Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia. Nature Communications, 11(1): 939.
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Furtwängler, A., Rohrlach, A. B., Lamnidis, T. C., Papac, L., Neumann, G., Siebke, I., Reiter, E., Steuri, N., Hald, J., Denaire, A., Schnitzler, B., Wahl, J., Ramstein, M., Schuenemann, V. J., Stockhammer, P. W., Hafner, A., Lösch, S., Haak, W., Schiffels, S., & Krause, J. (2020). Author Correction: Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature Communications, 11: 4759.
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Hübler, R., Key, F. M., Warinner, C. G., Bos, K. I., Krause, J., & Herbig, A. (2019). HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology, 20: 280.
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Fischer, M. S., Hoßfeld, U., Krause, J., & Richter, S. (2019). Jenaer Erklärung: das Konzept der Rasse ist das Ergebnis von Rassismus und nicht dessen Voraussetzung. Biologie in unserer Zeit, 49(6), 399-402.
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Gretzinger, J., Molak, M., Reiter, E., Pfrengle, S., Urban, C., Neukamm, J., Blant, M., Conard, N. J., Cupillard, C., Dimitrijević, V., Drucker, D. G., Hofman-Kamińska, E., Kowalczyk, R., Krajcarz, M. T., Krajcarz, M., Münzel, S. C., Peresani, M., Romandini, M., Rufí, I., Soler, J., Terlato, G., Krause, J., Bocherens, H., & Schuenemann, V. J. (2019). Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear. Scientific Reports, 9(1): 10700.
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Översti, S., Majander, K., Salmela, E., Salo, K., Arppe, L., Belskiy, S., Etu-Sihvola, H., Laakso, V., Mikkola, E., Pfrengle, S., Putkonen, M., Taavitsainen, J.-P., Vuoristo, K., Wessman, A., Sajantila, A., Oinonen, M., Haak, W., Schuenemann, V. J., Krause, J., Palo, J. U., & Onkamo, P. (2019). Human mitochondrial DNA lineages in Iron-Age Fennoscandia suggest incipient admixture and eastern introduction of farming-related maternal ancestry. Scientific Reports, 9(1): 16883.
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Bos, K. I., Kühnert, D., Herbig, A., Esquivel Gomez, L. R., Andrades Valtueña, A., Barquera Lozano, R. J., Giffin, K., Lankapalli, A. K., Nelson, E. A., Sabin, S., Spyrou, M. A., & Krause, J. (2019). Paleomicrobiology: Diagnosis and evolution of ancient pathogens. Annual Review of Microbiology, 73(1), 639-666.
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Siebke, I., Steuri, N., Furtwängler, A., Ramstein, M., Arenz, G., Hafner, A., Krause, J., & Lösch, S. (2019). Who lived on the Swiss Plateau around 3300 BCE? Analyses of commingled human skeletal remains from the dolmen of Oberbipp. International Journal of Osteoarchaeology, 29(5): oa.2791, pp. 786-796.
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Ning, C., Wang, C.-C., Gao, S., Yang, Y., Zhang, X., Wu, X., Zhang, F., Nie, Z., Tang, Y., Robbeets, M., Ma, J., Krause, J., & Cui, Y. (2019). Ancient genomes reveal Yamnaya-related ancestry and a potential source of Indo-European speakers in Iron Age Tianshan. Current Biology, 29(15), 2526-2532.e4.
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Posth, C., Nägele, K., Colleran, H., Valentin, F., Bedford, S., Gray, R. D., Krause, J., & Powell, A. (2019). Response to “Ancient DNA and its contribution to understanding the human history of the Pacific Islands” (Bedford et al. 2018). Archaeology in Oceania, 54, 57-61.
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Spyrou, M. A., Bos, K. I., Herbig, A., & Krause, J. (2019). Ancient pathogen genomics as an emerging tool for infectious disease research. Nature Reviews Genetics, 20, 323-340.
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Steuri, N., Siebke, I., Furtwängler, A., Szidat, S., Krause, J., Lösch, S., & Hafner, A. (2019). Multiple radiocarbon dating of human remains: Clarifying the chronology and sequences of burials in the late Neolithic dolmen of Oberbipp (Switzerland). Radiocarbon, 61, 1697-1709.
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Furtwängler, A., Reiter, E., Neumann, G. U., Siebke, I., Steuri, N., Hafner, A., Lösch, S., Anthes, N., Schuenemann, V. J., & Krause, J. (2018). Ratio of mitochondrial to nuclear DNA affects contamination estimates in ancient DNA analysis. Scientific Reports, 8: 14075.
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O’Sullivan, N., Posth, C., Coia, V., Schuenemann, V. J., Price, T. D., Wahl, J., Pinhasi, R., Zink, A., Krause, J., & Maixner, F. (2018). Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard. Science Advances, 4(9): 1262.
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Eisenmann, S., Bánffy, E., van Dommelen, P., Hofmann, K. P., Maran, J., Lazaridis, I., Mittnik, A., McCormick, M., Krause, J., Reich, D., & Stockhammer, P. W. (2018). Reconciling material cultures in archaeology with genetic data: The nomenclature of clusters emerging from archaeogenomic analysis. Scientific Reports, 8: 13003.
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Spyrou, M. A., Tukhbatova, R. I., Wang, C.-C., Andrades Valtueña, A., Lankapalli, A. K., Kondrashin, V. V., Tsybin, V. A., Khokhlov, A., Kühnert, D., Herbig, A., Bos, K. I., & Krause, J. (2018). Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications, 9: 2234.
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Loosdrecht, M. v. d., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Ayinuer-Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., Amzazi, S., Hublin, J.-J., Pääbo, S., Schiffels, S., Meyer, M., Haak, W., Jeong, C., & Krause, J. (2018). Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science, 360(6388), 548-552.
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Exposito-Alonso, M., Becker, C., Schuenemann, V. J., Reiter, E., Setzer, C., Slovak, R., Brachi, B., Hagmann, J., Grimm, D. G., Chen, J., Busch, W., Bergelson, J., Ness, R. W., Krause, J., Burbano, H. A., & Weigel, D. (2018). The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genetics, 14(2): e1007155.
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Peltzer, A., Mittnik, A., Wang, C.-C., Begg, T., Posth, C., Nieselt, K., & Krause, J. (2018). Inferring genetic origins and phenotypic traits of George Bähr, the architect of the Dresden Frauenkirche. Scientific Reports, 8: 2115.
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Schuenemann, V. J., Avanzi, C., Krause-Kyora, B., Seitz, A., Herbig, A., Inskip, S., Bonazzi, M., Reiter, E., Urban, C., Dangvard Pedersen, D., Taylor, G. M., Singh, P., Stewart, G. R., Velemínský, P., Likovsky, J., Marcsik, A., Molnár, E., Pálfi, G., Mariotti, V., Riga, A., Belcastro, M. G., Boldsen, J. L., Nebel, A., Mays, S., Donoghue, H. D., Zakrzewski, S., Benjak, A., Nieselt, K., Cole, S. T., & Krause, J. (2018). Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens, 14(5): e1006997.
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Fellows Yates, J. A., Drucker, D. G., Reiter, E., Heumos, S., Welker, F., Münzel, S. C., Wojtal, P., Lázničková-Galetová, M., Conard, N. J., Herbig, A., Bocherens, H., & Krause, J. (2017). Central European Woolly Mammoth population dynamics: Insights from Late Pleistocene Mitochondrial Genomes. Scientific Reports, 7: 17714.
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Szécsényi-Nagy, A., Roth, C., Brandt, G., Rihuete-Herrada, C., Tejedor-Rodríguez, C., Held, P., García-Martínez-de-Lagrán, Í., Magallón, H. A., Zesch, S., Knipper, C., Bánffy, E., Friederich, S., Meller, H., Ramírez, P. B., Bermejo, R. B., de Behrmann, R. B., Herrero-Corral, A. M., Fernández, R. F., Fernández, C. A., Echevarria, J. J., Rindlisbacher, L., Oliart, C., Fregeiro, M.-I., Soriano, I., Vicente, O., Micó, R., Lull, V., Díaz, J. S., Padilla, J. A. L., de Muñoz, C. R. T., Pérez, M. S. H., Maestre, F. J. J., Maurandi, J. L., Fernández, A. A., Lillios, K. T., Silva, A. M., Ramalho, M. M., Oosterbeek, L. M., Cunha, C., Waterman, A. J., Buxó, J. R., Martínez, A., Martínez, J. P., Ortiz, M. H., Mejías-García, J. C., Espín, J. C. P., Briones, R.-C.-A., Tomé, T., Ballestero, E. C., Cardoso, J. L., Araújo, A. C., von Lettow-Vorbeck, C. L., Bosqued, C. B., Mendoza, P. R., Pujante, A., Royo-Guillén, J. I., Beviá, M. A. E., Goncalves, V. M. D. S., Parreira, R., Hernández, E. M., Izquierdo, E. M., Miguel, J. V. y., García, R. M., Calvo, V. M., Jiménez, O. L., Krause, J., Pichler, S. L., Garrido-Pena, R., Kunst, M., Risch, R., Rojo-Guerra, M. A., Haak, W., & Alt, K. W. (2017). The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age. Scientific Reports, 7: 15644.
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Knipper, C., Mittnik, A., Massy, K., Kociumaka, C., Kucukkalipci, I., Maus, M., Wittenborn, F., Metz, S. E., Staskiewicz, A., Krause, J., & Stockhammer, P. W. (2017). Female exogamy and gene pool diversification at the transition from the final neolithic to the early Bronze Age in central Europe. Proceedings of the National Academy of Sciences of the United States of America, 114(38), 10083-10088.
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Prendergast, M. E., Buckley, M., Crowther, A., Frantz, L., Eager, H., Lebrasseur, O., Hutterer, R., Hulme-Beaman, A., Neer, W. v., Douka, K., Veall, M.-A., Morales, E. M. Q., Schuenemann, V. J., Reiter, E., Allen, R., Dimopoulos, E. A., Helm, R. M., Shipton, C., Mwebi, O., Denys, C., Horton, M., Wynne-Jones, S., Fleisher, J., Radimilahy, C., Wright, H., Searle, J. B., Krause, J., Larson, G., & Boivin, N. L. (2017). Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PLoS One, 12(8): e0182565.
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Swarts, K., Gutaker, R. M., Benz, B., Blake, M., Bukowski, R., Holland, J., Kruse-Peeples, M., Lepak, N., Prim, L., Romay, M. C., Ross-Ibarra, J., Sanchez-Gonzalez, J. J. d., Schmidt, C., Schuenemann, V. J., Krause, J., Matson, R. G., Weigel, D., Buckler, E. S., & Burbano, H. A. (2017). Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science, 357(6350), 512-515.
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Key, F. M., Posth, C., Krause, J., Herbig, A., & Bos, K. I. (2017). Mining metagenomic data sets for ancient DNA: Recommended protocols for authentication. Trends in Genetics, 33(8), 508-520.
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Warinner, C. G., Herbig, A., Mann, A., Fellows Yates, J. A., Weiß, C. L., Burbano, H. A., Orlando, L., & Krause, J. (2017). A robust framework for microbial archaeology. Annual Review of Genomics and Human Genetics, 18, 321-356.
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Schuenemann, V. J., Peltzer, A., Welte, B., Pelt, W. P. v., Molak, M., Wang, C.-C., Furtwängler, A., Urban, C., Reiter, E., Nieselt, K., Teßmann, B., Francken, M., Harvati, K., Haak, W., Schiffels, S., & Krause, J. (2017). Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods. Nature Communications, 8: 15694.
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Yao, H.-B., Wang, C.-C., Wang, J., Tao, X., Shang, L., Wen, S.-Q., Du, Q., Deng, Q., Xu, B., Huang, Y., Wang, H.-D., Li, S., Cong, B., Ma, L., Jin, L., Krause, J., & Li, H. (2017). Genetic structure of Tibetan populations in Gansu revealed by forensic STR loci. Scientific Reports, 7: 41195.
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Andrades Valtueña, A., Mittnik, A., Key, F. M., Haak, W., Allmäe, R., Belinskij, A., Daubaras, M., Feldman, M., Jankauskas, R., Janković, I., Massy, K., Novak, M., Pfrengle, S., Reinhold, S., Šlaus, M., Spyrou, M. A., Szécsényi-Nagy, A., Tõrv, M., Hansen, S., Bos, K. I., Stockhammer, P. W., Herbig, A., & Krause, J. (2017). The Stone Age plague and its persistence in Eurasia. Current Biology, 27(23), 3683-3691.
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Krause, J. (2016). Der Europäer ist auch genetisch ein Potpourri. Frankfurter Allgemeine Zeitung. Retrieved from http://www.faz.net/-gwz-8o34n.
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Feldman, M., Harbeck, M., Keller, M., Spyrou, M. A., Rott, A., Trautmann, B., Scholz, H. C., Päffgen, B., Peters, J., McCormick, M., Bos, K. I., Herbig, A., & Krause, J. (2016). A high-coverage Yersinia pestis genome from a 6th-century Justinianic plague victim. Molecular Biology and Evolution, 33(11), 2911-2923.
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Gogarten, J. F., Düx, A., Schuenemann, V. J., Nowak, K., Boesch, C., Wittig, R. M., Krause, J., Calvignac-Spencer, S., & Leendertz, F. H. (2016). Tools for opening new chapters in the book of Treponema pallidum evolutionary history. Clinical Microbiology and Infection, 22(11), 916-921.
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Mittnik, A., Wang, C.-C., Svoboda, J., & Krause, J. (2016). A molecular approach to the sexing of the triple burial at the upper paleolithic site of Dolní Věstonice. PLoS One, 11(10): e0163019.
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Immel, A., Le Cabec, A. *., Bonazzi, M., Herbig, A., Temming, H., Schuenemann, V. J., Bos, K. I., Langbein, F., Harvati, K., Bridault, A., Pion, G., Julien, M.-A., Krotova, O., Conard, N. J., Münzel, S. C., Drucker, D. G., Viola, B., Hublin, J.-J., Tafforeau, P., & Krause, J. (2016). Effect of X-ray irradiation on ancient DNA in sub-fossil bones – Guidelines for safe X-ray imaging. Scientific Reports, 6: 32969.
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Lazaridis, I., Nadel, D., Rollefson, G., Merrett, D. C., Rohland, N., Mallick, S., Fernandes, D., Novak, M., Gamarra, B., Sirak, K., Connell, S., Stewardson, K., Harney, E., Fu, Q., Gonzalez-Fortes, G., Jones, E. R., Roodenberg, S. A., Lengyel, G., Bocquentin, F., Gasparian, B., Monge, J. M., Gregg, M., Eshed, V., Mizrahi, A.-S., Meiklejohn, C., Gerritsen, F., Bejenaru, L., Blüher, M., Campbell, A., Cavalleri, G., Comas, D., Froguel, P., Gilbert, E., Kerr, S. M., Kovacs, P., Krause, J., McGettigan, D., Merrigan, M., Merriwether, D. A., O'Reilly, S., Richards, M. B., Semino, O., Shamoon-Pour, M., Stefanescu, G., Stumvoll, M., Tönjes, A., Torroni, A., Wilson, J. F., Yengo, L., Hovhannisyan, N. A., Patterson, N., Pinhasi, R., & Reich, D. (2016). Genomic insights into the origin of farming in the ancient Near East. Nature, 536(7617), 419-424.
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Rougier, H., Crevecoeur, I., Beauval, C., Posth, C., Flas, D., Wissing, C., Furtwängler, A., Germonpré, M., Gómez-Olivencia, A., Semal, P., Plicht, J. v. d., Bocherens, H., & Krause, J. (2016). Neandertal cannibalism and Neandertal bones used as tools in Northern Europe. Scientific Reports, 6: 29005.
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Weiß, C. L., Schuenemann, V. J., Devos, J., Shirsekar, G., Reiter, E., Gould, B. A., Stinchcombe, J. R., Krause, J., & Burbano, H. A. (2016). Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens. Royal Society Open Science, 3(6): 160239.
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Fu, Q., Posth, C., Hajdinjak, M., Petr, M., Mallick, S., Fernandes, D., Furtwängler, A., Haak, W., Meyer, M., Mittnik, A., Nickel, B., Peltzer, A., Rohland, N., Slon, V., Talamo, S., Lazaridis, I., Lipson, M., Mathieson, I., Schiffels, S., Skoglund, P., Derevianko, A. P., Drozdov, N., Slavinsky, V., Tsybankov, A., Cremonesi, R. G., Mallegni, F., Gély, B., Vacca, E., Morales, M. R. G., Straus, L. G., Neugebauer-Maresch, C., Teschler-Nicola, M., Constantin, S., Moldovan, O. T., Benazzi, S., Peresani, M., Coppola, D., Lari, M., Ricci, S., Ronchitelli, A., Valentin, F., Thevenet, C., Wehrberger, K., Grigorescu, D., Rougier, H., Crevecoeur, I., Flas, D., Semal, P., Mannino, M. A., Cupillard, C., Bocherens, H., Conard, N. J., Harvati, K., Moiseyev, V., Drucker, D. G., Svoboda, J., Richards, M. P., Caramelli, D., Pinhasi, R., Kelso, J., Patterson, N., Krause, J., Pääbo, S., & Reich, D. (2016). The genetic history of Ice Age Europe. Nature, 534(7606), 200-205.
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Spyrou, M. A., Tukhbatova, R. I., Feldman, M., Drath, J., Kacki, S., Heredia, J. B. d., Arnold, S., Sitdikov, A. G., Castex, D., Wahl, J., Gazimzyanov, I. R., Nurgaliev, D. K., Herbig, A., Bos, K. I., & Krause, J. (2016). Historical Y. pestis genomes reveal the European Black Death as the source of ancient and modern plague pandemics. Cell Host & Microbe, 19(6), 874-881.
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Krause, J., & Pääbo, S. (2016). Genetic time travel. Genetics, 203(1), 9-12.
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Peltzer, A., Jager, G., Herbig, A., Seitz, A., Kniep, C., Krause, J., & Nieselt, K. (2016). EAGER: efficient ancient genome reconstruction. Genome Biology, 17: 60.
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Posth, C., Renaud, G., Mittnik, A., Drucker, D. G., Rougier, H., Cupillard, C., Valentin, F., Thevenet, C., Furtwängler, A., Wißing, C., Francken, M., Malina, M., Bolus, M., Lari, M., Gigli, E., Capecchi, G., Crevecoeur, I., Beauval, C., Flas, D., Germonpré, M., van der Plicht, J., Cottiaux, R., Gély, B., Ronchitelli, A., Wehrberger, K., Grigorescu, D., Svoboda, J., Semal, P., Caramelli, D., Bocherens, H., Harvati, K., Conard, N. J., Haak, W., Powell, A., & Krause, J. (2016). Pleistocene mitochondrial genomes suggest a single major dispersal of non-Africans and a late glacial population turnover in Europe. Current Biology, 26(6), 827-833.
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Bos, K., Herbig, A., Sahl, J., Waglechner, N., Fourment, M., Forrest, S. A., Klunk, J., Schuenemann, V. J., Poinar, D., Kuch, M., Golding, G. B., Dutour, O., Keim, P., Wagner, D. M., Holmes, E. C., Krause, J., & Poinar, H. N. (2016). Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife, 5: e12994.
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Maixner, F., Krause-Kyora, B., Turaev, D., Herbig, A., Hoopmann, M. R., Hallows, J. L., Kusebauch, U., Vigl, E. E., Malfertheiner, P., Megraud, F., O’Sullivan, N., Cipollini, G., Coia, V., Samadelli, M., Engstrand, L., Linz, B., Moritz, R. L., Grimm, R., Krause, J., Nebel, A., Moodley, Y., Rattei, T., & Zink, A. (2016). The 5300-year-old Helicobacter pylori genome of the Iceman. Science, 351(6269), 162-165.
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Mascher, M., Schuenemann, V., Davidovich, U., Marom, N., Himmelbach, A., Hübner, S., Korol, A., David, M., Reiter, E., Riehl, S., Schreiber, M., Vohr, S., Green, R., Dawson, I., Russell, J., Kilian, B., Muehlbauer, G., Waugh, R., Fahima, T., Krause, J., Weiss, E., & Stein, N. (2016). Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nature Genetics, 48(9), 1089-1095.
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Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E. R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J. L., de Castro, J. M. B., Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M. A. R., Roodenberg, J., Vergès, J. M., Krause, J., Cooper, A., Alt, K. W., Brown, D., Anthony, D., Lalueza-Fox, C., Haak, W., Pinhas, R., & Reich, D. (2015). Genome-wide patterns of selection in 230 ancient Eurasians. Nature, 528, 499-503.
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Stockhammer, P. W., Massy, K., Knipper, C., Friedrich, R., Kromer, B., Lindauer, S., Radosavljević, J., Wittenborn, F., & Krause, J. (2015). Rewriting the Central European Early Bronze Age chronology: Evidence from large-scale radiocarbon dating. PLoS One, e0139705.
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Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., Fu, Q., Mittnik, A., Bánffy, E., Economou, C., Francken, M., Friederich, S., Pena, R. G., Hallgren, F., Khartanovich, V., Khokhlov, A., Kunst, M., Kuznetsov, P., Meller, H., Mochalov, O., Moiseyev, V., Nicklisch, N., Pichler, S. L., Risch, R., Guerra, M. A. R., Roth, C., Szécsényi-Nagy, A., Wahl, J., Meyer, M., Krause, J., Brown, D., Anthony, D., Cooper, A., Alt, K. W., & Reich, D. (2015). Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, (522), 207-211.
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Immel, A., Drucker, D. G., Bonazzi, M., Jahnke, T. K., Munzel, S. C., Schuenemann, V. J., Herbig, A., Kind, C.-J., & Krause, J. (2015). Mitochondrial genomes of giant deers suggest their late survival in Central Europe. Scientific Reports, 5: 10853.
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52

Singh, P., Benjak, A., Schuenemann, V. J., Herbig, A., Avanzi, C., Busso, P., Nieselt, K., Krause, J., Vera-Cabrera, L., & Cole, S. T. (2015). Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis. Proceedings of the National Academy of Sciences of the USA, 112 (14), 4459-4464.
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51

Bos, K. I., Jaeger, G., Schuenemann, V. J., Vågene, Å. J., Spyrou, M. A., Herbig, A., Nieselt, K., & Krause, J. (2015). Parallel detection of ancient pathogens via array-based DNA capture. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences, 370(1660): 20130375.
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50

Harkins, K. M., Buikstra, J. E., Campbell, T., Bos, K. I., Johnson, E. D., Krause, J., & Stone, A. C. (2015). Screening ancient tuberculosis with qPCR: Challenges and opportunities. Philosophical Transactions of the Royal Society B: Biological Sciences, 370(1660): 20130622.
DOI    BibTeX   Endnote   

49

Krause, J. (2015). Ancient human migrations. Die Kunde, 64, 87-99.
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48

Shafer, A. B., Wolf, J. B., Alves, P. C., Bergström, L., Bruford, M. W., Brännström, I., Colling, G., Dalén, L., De Meester, L., Ekblom, R., Fawcett, K. D., Fior, S., Hajibabaei, M., Hill, J. A., Hoezel, A. R., Höglund, J., Jensen, E. L., Krause, J., Kristensen, T. N., Krützen, M., McKay, J. K., Norman, A. J., Ogden, R., Österling, E. M., Ouborg, N. J., Piccolo, J., Popović, D., Primmer, C. R., Reed, F. A., Roumet, M., Salmona, J., Schenekar, T., Schwartz, M. K., Segelbacher, G., Senn, H., Thaulow, J., Valtonen, M., Veale, A., Vergeer, P., Vijay, N., Vilà, C., Weissensteiner, M., Wennerström, L., Wheat, C. W., & Zieliński, P. (2015). Genomics and the challenging translation into conservation practice. Trends in Ecology & Evolution, 30(2), 78-87.
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47

Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., Berger, B., Economou, C., Bollongino, R., Fu, Q., Bos, K. I., Nordenfelt, S., Li, H., de Filippo, C., Prüfer, K., Sawyer, S., Posth, C., Haak, W., Hallgren, F., Fornander, E., Rohland, N., Delsate, D., Francken, M., Guinet, J.-M., Wahl, J., Ayodo, G., Babiker, H. A., Bailliet, G., Balanovska, E., Balanovsky, O., Barrantes, R., Bedoya, G., Ben-Ami, H., Bene, J., Berrada, F., Bravi, C. M., Brisighelli, F., Busby, G. B. J., Cali, F., Churnosov, M., Cole, D. E. C., Corach, D., Damba, L., van Driem, G., Dryomov, S., Dugoujon, J.-M., Fedorova, S. A., Romero, I. G., Gubina, M., Hammer, M., Henn, B. M., Hervig, T., Hodoglugil, U., Jha, A. R., Karachanak-Yankova, S., Khusainova, R., Khusnutdinova, E., Kittles, R., Kivisild, T., Klitz, W., Kucinskas, V., Kushniarevich, A., Laredj, L., Litvinov, S., Loukidis, T., Mahley, R. W., Melegh, B., Metspalu, E., Molina, J., Mountain, J., Näkkäläjärvi, K., Nesheva, D., Nyambo, T., Osipova, L., Parik, J., Platonov, F., Posukh, O., Romano, V., Rothhammer, F., Rudan, I., Ruizbakiev, R., Sahakyan, H., Sajantila, A., Salas, A., Starikovskaya, E. B., Tarekegn, A., Toncheva, D., Turdikulova, S., Uktveryte, I., Utevska, O., Vasquez, R., Villena, M., Voevoda, M., Winkler, C. A., Yepiskoposyan, L., Zalloua, P., Zemunik, T., Cooper, A., Capelli, C., Thomas, M. G., Ruiz-Linares, A., Tishkoff, S. A., Singh, L., Thangaraj, K., Villems, R., Comas, D., Sukernik, R., Metspalu, M., Meyer, M., Eichler, E. E., Burger, J., Slatkin, M., Pääbo, S., Kelso, J., Reich, D., & Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature, 513(7518), 409-413.
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46

Zink, A., Wann, L. S., Thompson, R. C., Keller, A., Maixner, F., Allam, A. H., Finch, C. E., Frohlich, B., Kaplan, H., Lombardi, G. P., Sutherland, M. L., Sutherland, J. D., Watson, L., Cox, S. L., Miyamoto, M. I., Narula, J., Stewart, A. F., Thomas, G. S., & Krause, J. (2014). Genomic correlates of atherosclerosis in ancient humans. Global Heart, 9(2), 203-209.
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45

Yoshida, K., Burbano, H. A., Krause, J., Thines, M., Weigel, D., & Kamoun, S. (2014). Mining herbaria for plant pathogen genomes: Back to the future. PLoS Pathogens, 10(4): e1004028.
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44

Skoglund, P., Northoff, B. H., Shunkov, M. V., Derevianko, A. P., Pääbo, S., Krause, J., & Jakobsson, M. (2014). Separating endogenous ancient DNA from modern day contamination in a Siberian Neandertal. Proceedings of the National Academy of Sciences of the United States of America, 111(6), 2229-2234.
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43

Bos, K. I., Harkins, K. M., Herbig, A., Coscolla, M., Weber, N., Comas, I., Forrest, S. A., Bryant, J. M., Harris, S. R., Schuenemann, V. J., Campbell, T. J., Majander, K., Wilbur, A. K., Guichon, R. A., Steadman, D. L. W., Cook, D. C., Niemann, S., Behr, M. A., Zumarraga, M., Bastida, R., Huson, D., Nieselt, K., Young, D., Parkhill, J., Buikstra, J. E., Gagneux, S., Stone, A. C., & Krause, J. (2014). Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis. Nature, 514(7523), 494-497.
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42

Krause, J. (2014). Die molekulare Stammesgeschichte des Menschen: Steckt in uns allen ein kleiner Neandertaler? Senckenberg: Natur, Forschung, Museum; das Senckenberg-Wissenschaftsmagazin, 144(7/8), 274-277.
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41

Mendum, T. A., Schuenemann, V. J., Roffey, S., Taylor, G., Wu, H., Singh, P., Tucker, K., Hinds, J., Cole, S. T., Kierzek, A. M., Nieselt, K., Krause, J., & Stewart, G. R. (2014). Mycobacterium leprae genomes from a British medieval leprosy hospital: Towards understanding an ancient epidemic. BMC Genomics, 15: 270.
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40

Schünemann, V. J., & Krause, J. (2014). Wo der Mensch auf den Hund kam: Genetische Untersuchungen deuten darauf hin, dass der Ursprung der Domestikation in Europa liegt. Senckenberg: Natur, Forschung, Museum; das Senckenberg-Wissenschaftsmagazin, 144(7/8), 278-281.
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39

Thalmann, O., Shapiro, B., Cui, P., Schuenemann, V. J., Sawyer, S., Greenfield, D. L., Germonpré, M. B., Sablin, M. V., López-Giráldez, F., Domingo-Roura, X., Napierala, H., Uerpmann, H.-P., Loponte, D. M., Acosta, A. A., Giemsch, L., Schmitz, R. W., Worthington, B., Buikstra, J. E., Druzhkova, A., Graphodatsky, A. S., Ovodov, N. D., Wahlberg, N., Freedman, A. H., Schweizer, R. M., Koepfli, K.-P., Leonard, J. A., Meyer, M., Krause, J., Pääbo, S., Green, R. E., & Wayne, R. K. (2013). Complete mitochondrial genomes of ancient canids suggest a European origin of domestic dogs. Science, 342(6160), 871-874.
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38

Schuenemann, V. J., Singh, P., Mendum, T. A., Krause-Kyora, B., Jaeger, G., Bos, K., Herbig, A., Economou, C., Benjak, A., Busso, P., Nebel, A., Boldsen, J. L., Kjellstrom, A., Wu, H., Stewart, G. R., Taylor, G. M., Bauer, P., Lee, O.-Y.-.-C., Wu, H. H. T., Minnikin, D. E., Besra, G. S., Tucker, K., Roffey, S., Sow, S. O., Cole, S. T., Nieselt, K., & Krause, J. (2013). Genome-wide comparison of medieval and modern Mycobacterium leprae. Science, 341(6142), 179-183.
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37

Fu, Q., Mittnik, A., Johnson, P. L., Bos, K., Lari, M., Bollongino, R., Sun, C., Giemsch, L., Schmitz, R., Burger, J., Ronchitelli, A. M., Martini, F., Cremonesi, R. G., Svoboda, J., Bauer, P., Caramelli, D., Castellano, S., Reich, D., Pääbo, S., & Krause, J. (2013). A revised timescale for human evolution based on ancient mitochondrial genomes. Current Biology, 23(7), 553-559.
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36

Guschanski, K., Krause, J., Sawyer, S., Valente, L. M., Bailey, S., Finstermeier, K., Sabin, R., Gilissen, E., Sonet, G., Nagy, Z. T., Lenglet, G., Mayer, F., & Savolainen, V. (2013). Next-generation museomics disentangles one of the largest primate radiations. Systematic Biology, 62(4), 539-554.
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35

Yoshida, K., Schuenemann, V. J., Cano, L. M., Pais, M., Mishra, B., Sharma, R., Lanz, C., Martin, F. N., Kamoun, S., Krause, J., Thines, M., Weigel, D., & Burbano, H. A. (2013). The rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine. eLife, 2: e00731.
Open Access    DOI    BibTeX   Endnote   

34

Bos, K. I., Stevens, P., Nieselt, K., Poinar, H. N., DeWitte, S. N., & Krause, J. (2012). Yersinia pestis: New evidence for an old infection. PLoS One, 7(11): e49803.
Open Access    DOI    BibTeX   Endnote   

33

Krause, J. (2012). Human origins and the search for “Missing Links”. PLoS Biology, 10(5): e1001333.
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32

Sawyer, S., Krause, J., Guschanski, K., Savolainen, V., & Pääbo, S. (2012). Temporal patterns of nucleotide misincorporations and DNA fragmentation in ancient DNA. PLoS One, 7(3): e34131.
Open Access    DOI    BibTeX   Endnote   

31

Fu, Q., Rudan, P., Pääbo, S., & Krause, J. (2012). Complete mitochondrial genomes reveal neolithic expansion into Europe. PLoS One, 7(3): e32473.
Open Access    DOI    BibTeX   Endnote   

30

Bos, K. I., Schuenemann, V. J., Golding, G. B., Burbano, H. A., Waglechner, N., Coombes, B. K., McPhee, J. B., DeWitte, S. N., Meyer, M., Schmedes, S., Wood, J., Earn, D. J. D., Herring, D. A., Bauer, P., Poinar, H. N., & Krause, J. (2011). A draft genome of Yersinia pestis from victims of the Black Death. Nature, 478(7370), 506-510.
Open Access    DOI    BibTeX   Endnote   

29

Jordan, S., Krause, J., Prager, A., Mitrovic, M., Jonjic, S., Koszinowski, U. H., & Adler, B. (2011). Virus progeny of murine cytomegalovirus bacterial artificial chromosome pSM3fr show reduced growth in salivary glands due to a fixed mutation of MCK-2. Journal of Virology, 85(19), 10346-10353.
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28

Schuenemann, V. J., Bos, K. I., DeWitte, S., Schmedes, S., Jamieson, J., Mittnik, A., Forrest, S., Coombes, B. K., Wood, J. W., Earn, D. J. D., White, W., Krause, J., & Poinar, H. N. (2011). Targeted enrichment of ancient pathogens yielding the pPCP1 plasmid of Yersinia pestis from victims of the Black Death. Proceedings of the National Academy of Sciences, 108(38), E746-E752.
DOI    BibTeX   Endnote   

27

Stoneking, M., & Krause, J. (2011). Learning about human population history from ancient and modern genomes. Nature Reviews Genetics, 12(9), 603-614.
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26

Krause, J., Briggs, A. W., Kircher, M., Maricic, T., Zwyns, N., Derevianko, A. P., & Pääbo, S. (2010). A complete mtDNA genome of an early modern human from Kostenki, Russia. Current Biology, 20(3), 231-236.
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25

Briggs, A. W., Stenzel, U., Meyer, M., Krause, J., Kircher, M., & Pääbo, S. (2010). Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA. Special Issue on Synthetic Biology, e87, pp. 1-12.
Open Access    DOI    BibTeX   Endnote   

24

Burbano, H. A., Hodges, E., Green, R. E., Briggs, A. W., Krause, J., Meyer, M., Good, J. M., Maricic, T., Johnson, P. L. F., Xuan, Z., Rooks, M., Bhattacharjee, A., Brizuela, L., Albert, F. W., Rasilla, M. d. l., Fortea, J., Rosas, A., Lachmann, M., Hannon, G. J., & Pääbo, S. (2010). Targeted investigation of the Neandertal genome by array-based sequence capture. Science, 328(5979), 723-725.
DOI    BibTeX   Endnote   

23

Green, R. E., Krause, J., Briggs, A. W., Maricic, T., Stenzel, U., Kircher, M., Patterson, N., Li, H., Zhai, W., Fritz, M.-H.-Y., Hansen, N. F., Durand, E. Y., Malaspinas, A.-S., Jensen, J. D., Marques-Bonet, T., Alkan, C., Prüfer, K., Meyer, M., Burbano, H. A., Good, J. M., Schultz, R., Aximu-Petri, A., Butthoff, A., Höber, B., Höffner, B., Siegemund, M., Weihmann, A., Nusbaum, C., Lander, E. S., Russ, C., Novod, N., Affourtit, J., Egholm, M., Verna, C., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Doronichev, V. B., Golovanova, L. V., Lalueza-Fox, C., Rasilla, M. d. l., Fortea, J., Rosas, A., Schmitz, R. W., Johnson, P. L. F., Eichler, E. E., Falush, D., Birney, E., Mullikin, J. C., Slatkin, M., Nielsen, R., Kelso, J., Lachmann, M., Reich, D., & Pääbo, S. (2010). A draft sequence of the Neandertal genome. Science, 328(5979), 710-722.
DOI    BibTeX   Endnote   

22

Krause, J. (2010). From genes to genomes: What is new in ancient DNA? Mitteilungen der Gesellschaft für Urgeschichte, 19, 11-34.
BibTeX   Endnote   

21

Krause, J., Fu, Q., Good, J. M., Viola, B., Shunkov, M. V., Derevianko, A. P., & Pääbo, S. (2010). The complete mitochondrial DNA genome of an unknown hominin from southern Siberia. Nature, 464(7290), 894-897.
DOI    BibTeX   Endnote   

20

Reich, D., Green, R. E., Kircher, M., Krause, J., Patterson, N., Durand, E. Y., Viola, B., Briggs, A. W., Stenzel, U., Johnson, P. L. F., Maricic, T., Good, J. M., Marques-Bonet, T., Alkan, C., Fu, Q., Mallick, S., Li, H., Meyer, M., Eichler, E. E., Stoneking, M., Richards, M., Talamo, S., Shunkov, M. V., Derevianko, A. P., Hublin, J.-J., Kelso, J., Slatkin, M., & Pääbo, S. (2010). Genetic history of an archaic hominin group from Denisova Cave in Siberia. Nature, 468(7327), 1053-1060.
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19

Briggs, A. W., Good, J. M., Green, R. E., Krause, J., Maricic, T., Stenzel, U., & Pääbo, S. (2009). Primer extension capture: Targeted sequence retrieval from heavily degraded DNA sources (Videodocumentation). Journal of Visualized Experiments, (31).
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18

Briggs, A. W., Good, J. M., Green, R. E., Krause, J., Maricic, T., Stenzel, U., Lalueza-Fox, C., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Schmitz, R. W., Doronichev, V. B., Golovanova, L. V., de la Rasilla, M., Fortea, J., Rosas, A., & Pääbo, S. (2009). Targeted retrieval and analysis of five Neandertal mtDNA genomes. Science, 325(5938), 318-321.
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17

Green, R. E., Briggs, A. W., Krause, J., Prüfer, K., Burbano, H. A., Siebauer, M., Lachmann, M., & Pääbo, S. (2009). The Neandertal genome and ancient DNA authenticity. EMBO Journal, 28(17), 2494-2502.
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16

Ptak, S. E., Enard, W., Wiebe, V., Hellmann, I., Krause, J., Lachmann, M., & Pääbo, S. (2009). Linkage disequilibrium extends across putative selected sites in FOXP2. Molecular Biology and Evolution, 26(10), 2181-2184.
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15

Green, R. E., Malaspinas, A.-S., Krause, J., Briggs, A. W., Johnson, P. L. F., Uhler, C., Meyer, M., Good, J. M., Maricic, T., Stenzel, U., Prüfer, K., Siebauer, M., Burbano, H. A., Ronan, M. T., Rothberg, J. M., Egholm, M., Rudan, P., Brajkovic, D., Kucan, Z., Gusic, I., Wikström, M., Laakkonen, L., Kelso, J., Slatkin, M., & Pääbo, S. (2008). A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing. Cell, 134(3), 416-426.
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14

Krause, J., Unger, T., Noçon, A., Malaspinas, A.-S., Kolokotronis, S.-O., Stiller, M., Soibelzon, L., Spriggs, H., Dear, P. H., Briggs, A. W., Bray, S. C. E., O'Brien, S. J., Rabeder, G., Matheus, P., Cooper, A., Slatkin, M., Pääbo, S., & Hofreiter, M. (2008). Mitochondrial genomes reveal an explosive radiation of extinct and extant bears near the Miocene-Pliocene boundary. BMC Evolutionary Biology, 8: 220.
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13

Lalueza-Fox, C., Gigli, E., de la Rasilla, M., Fortea, J., Rosas, A., Bertranpetit, J., & Krause, J. (2008). Genetic characterization of the ABO blood group in Neandertals. BMC Evolutionary Biology, 8: 342.
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12

Meyer, M., Briggs, A. W., Maricic, T., Höber, B., Höffner, B., Krause, J., Weihmann, A., Pääbo, S., & Hofreiter, M. (2008). From micrograms to picograms: Quantitative PCR reduces the material demands of high-throughput sequencing. Nucleic Acids Research, 36(1): e5.
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11

Briggs, A. W., Stenzel, U., Johnson, P. L. F., Green, R. E., Kelso, J., Prüfer, K., Meyer, M., Krause, J., Ronan, M. T., Lachmann, M., & Pääbo, S. (2007). Patterns of damage in genomic DNA sequences from a Neandertal. Proceedings of the National Academy of Sciences of the United States of America, 104(37), 14616-14621.
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10

Krause, J., Lalueza-Fox, C., Ludovic, O., Enard, W., Green, R. E., Burbano, H. A., Hublin, J.-J., Hänni, C., Fortea, J., de la Rasilla, M., Bertranpetit, J., Rosas, A., & Pääbo, S. (2007). The derived FOXP2 variant of modern humans was shared with Neandertals. Current Biology, 17(21), 1908-1912.
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9

Krause, J., Orlando, L., Serre, D., Viola, B., Prüfer, K., Richards, M. P., Hublin, J.-J., Hänni, C., Derevianko, A. P., & Pääbo, S. (2007). Neanderthals in central Asia and Siberia. Nature, 449(7164), 902-904.
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8

Green, R. E., Krause, J., Ptak, S. E., Briggs, A. W., Ronan, M. T., Simons, J. F., Du, L., Egholm, M., Rothberg, J. M., Paunovic, M., & Pääbo, S. (2006). Analysis of one million base pairs of Neanderthal DNA. Nature, 444, 330-336.
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7

Lalueza-Fox, C., Krause, J., Caramelli, D., Catalano, G., Milani, L., Sampietro, M. L., Calafell, F., Martinez-Maza, C., Bastir, M., García-Tabernero, A., de la Rasilla, M., Fortea, J., Pääbo, S., Bertranpetit, J., & Rosas, A. (2006). Mitochondrial DNA of an Iberian neandertal suggests a population affinity with other European neandertals. Current Biology, 16(16), R629-R630.
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6

Römpler, H., Dear, P. H., Krause, J., Meyer, M., Rohland, N., Schöneberg, T., Spriggs, H., Stiller, M., & Hofreiter, M. (2006). Multiplex amplification of ancient DNA. Nature Protocols, 1(2), 720-728.
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5

Krause, J., Dear, P. H., Pollack, J. L., Slatkin, M., Spriggs, H., Barnes, I., Lister, A. M., Ebersberger, I., Pääbo, S., & Hofreiter, M. (2006). Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae. Nature, 439(7077), 724-727.
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4

Noonan, J. P., Coop, G., Kudaravalli, S., Smith, D., Krause, J., Alessi, J., Chen, J., Platt, D., Pääbo, S., Pritchard, J. K., & Rubin, E. M. (2006). Sequencing and analysis of Neanderthal genomic DNA. Science, 314, 1113-1118.
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3

Noonan, J. P., Hofreiter, M., Smith, D., Priest, J. R., Rohland, N., Rabeder, G., Krause, J., Detter, J. C., Pääbo, S., & Rubin, E. M. (2005). Genomic sequencing of Pleistocene cave bears. Science, 309(5734), 597-599.
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2

Heißig, F., Krause, J., Bryk, J., Khaitovich, P., Enard, W., & Pääbo, S. (2005). Functional analysis of human and chimpanzee promoters. Genome Biology, 6: R57.
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1

Pääbo, S., Poinar, H. N., Serre, D., Jänicke-Després, V. R., Hebler, J., Rohland, N., Kuch, M., Krause, J., Vigilant, L., & Hofreiter, M. (2004). Genetic analyses from ancient DNA. Annual Review of Genetics, 38, 645-679.
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Bücher

3

Krause, J., & Trappe, T. (2021). Hybris: Die Reise der Menschheit: Zwischen Aufbruch und Scheitern. Berlin: Propyläen.
BibTeX   Endnote   

2

Krause, J., & Trappe, T. (2021). A short history of humanity: A new history of Old Europe. Random House.
DOI    BibTeX   Endnote   

1

Krause, J., & Trappe, T. (2019). Die Reise unserer Gene: Eine Geschichte über uns und unsere Vorfahren. Berlin: Propyläen Verlag.
BibTeX   Endnote   

Buchkapitel

6

Lösch, S., Siebke, I., Furtwängler, A., Steuri, N., Hafner, A., Szidat, S., & Krause, J. (2020). Bioarchäologische Untersuchungen der Knochen aus dem Dolmen von Oberbipp, Steingasse. In Archäologie Bern - Jahrbuch des Archäologischen Dienstes des Kantons Bern (pp. 202-230). Bern: Rub Media.
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5

Krause, J., & Haak, W. (2017). Neue Erkenntnisse zur genetischen Geschichte Europas. In H. Meller (Ed.), Migration und Integration von der Urgeschichte bis zum Mittelalter: 9. Mitteldeutscher Archäologentag vom 20.-22. Oktober 2016 in Halle (Saale) (pp. 21-38). Halle (Saale): Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt, Landesmuseum für Vorgeschichte.
BibTeX   Endnote   

4

Massy, K., Knipper, C., Mittnik, A., Kraus, S., Pernicka, E., Wittenborn, F., Krause, J., & Stockhammer, P. W. (2017). Patterns of transformation from the Final Neolithic to the Early Bronze Age: A case study from the Lech Valley South of Augsburg. In J. Maran (Ed.), Appropriating innovations: Entangled knowledge in Eurasia, 5000‒1500 BCE (pp. 241-261). Oxford: Oxbow Books.
BibTeX   Endnote   

3

Vågene, Å. J., Krause, J., & Bos, K. I. (2016). Metagenomic analysis and mitochondrial genome reconstruction of the post-medieval individual from Moneen Cave. In M. Dowd (Ed.), Archaeological excavations in Moneen Cave, the Burren, Co. Clare (pp. 49-52). Oxford: Archaeopress.
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2

Stockhammer, P. W., Massy, K., Knipper, C., Friedrich, R., Kromer, B., Lindauer, S., Radosavljević, J., Pernicka, E., & Krause, J. (2015). Kontinuität und Wandel vom Endneolithikum zur frühen Bronzezeit in der Region Augsburg. In H. Meller (Ed.), 2200 BC - Ein Klimasturz als Ursache für den Zerfall der Alten Welt? 7. Mitteldeutscher Archäologentag vom 23. bis 26. Oktober 2014 in Halle (Saale) (pp. 617-642).
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Krause, J. (2013). Ancient human migrations. In R. Neck, & H. Schmidinger (Eds.), Migration: [Österreichischer Wissenschaftstag 2011] (pp. 45-64). Wien: Böhlau.
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