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Department of Archaeogenetics

Max Planck Institute for Evolutionary Anthropology

Deutscher Platz 6
04103 Leipzig

phone: +49 (0)341 3550 - 867
fax: +49 (0)341 3550 - 555

e-mail: archsec@[>>> Please remove the brackets! <<<]eva.mpg.de


Publications

2021

6 Wang, C.-C., Yeh, H.-Y., Popov, A. N., Zhang, H.-Q., Matsumura, H., Sirak, K., Cheronet, O., Kovalev, A., Rohland, N., Kim, A. M., Mallick, S., Bernardos, R., Tumen, D., Zhao, J., Liu, Y.-C., Liu, J.-Y., Mah, M., Wang, K., Zhang, Z., Adamski, N., Broomandkhoshbacht, N., Callan, K., Candilio, F., Carlson, K. S. D., Culleton, B. J., Eccles, L., Freilich, S., Keating, D., Lawson, A. M., Mandl, K., Michel, M., Oppenheimer, J., Özdoğan, K. T., Stewardson, K., Wen, S., Yan, S., Zalzala, F., Chuang, R., Huang, C.-J., Looh, H., Shiung, C.-C., Nikitin, Y. G., Tabarev, A. V., Tishkin, A. A., Lin, S., Sun, Z.-Y., Wu, X.-M., Yang, T.-L., Hu, X., Chen, L., Du, H., Bayarsaikhan, J., Mijiddorj, E., Erdenebaatar, D., Iderkhangai, T.-O., Myagmar, E., Kanzawa-Kiriyama, H., Nishino, M., Shinoda, K.-i., Shubina, O. A., Guo, J., Cai, W., Deng, Q., Kang, L., Li, D., Li, D., Lin, R., Nini, Shrestha, R., Wang, L.-X., Wei, L., Xie, G., Yao, H., Zhang, M., He, G., Yang, X., Hu, R., Robbeets, M., Schiffels, S., Kennett, D. J., Jin, L., Li, H., Krause, J., Pinhasi, R., & Reich, D. (2021). Genomic insights into the formation of human populations in East Asia (advance online). Nature.
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5 Sala, N., Pablos, A., Rodríguez-Hidalgo, A., Arriolabengoa, M., Alcaraz-Castaño, M., Cubas, M., Posth, C.,Nägele, K., Pantoja-Pérez, A., Arlegi, M., Rodríguez-Almagro, M., Conde-Valverde, M., Cuenca-Bescós, G., Arribas, A., & Gómez-Olivencia, A. (2021). Cueva de los Torrejones revisited: New insights on the paleoecology of inland Iberia during the Late Pleistocene. Quaternary Science Reviews,253: 106765.
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4 Tritsaroli, P., Stockhammer, P. W., Konstantakou, T., & Kountouri, E. (2021). Burials and human osteological remains from the Βronze Αge acropolis of Aghios Ioannis in northeastern Kopais, Boeotia, Greece: Preliminary results of the bioarchaeological analysis. Journal of Archaeological Science: Reports,35: 102751.
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3 Pugach, I., Hübner, A., Hung, H.-c., Meyer, M., Carson, M. T., & Stoneking, M. (2021). Ancient DNA from Guam and the peopling of the Pacific. Proceedings of the National Academy of Sciences,118(1): e202211211.
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2 Orlando, L., Allaby, R., Skoglund, P., Sarkissian, C. D., Stockhammer, P. W., Ávila-Arcos, M. C., Fu, Q., Krause, J., Willerslev, E., Stone, A. C., & Warinner, C. (2021). Ancient DNA analysis. Nature Reviews Methods Primers,1: 14.
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1 Scott, A., Power, R. C., Altmann-Wendling, V., Artzy, M., Martin, M. A. S., Eisenmann, S.,Hagan, R.,Salazar-García, D. C., Salmon, Y., Yegorov, D., Milevski, I., Finkelstein, I., Stockhammer, P. W., & Warinner, C. (2021). Exotic foods reveal contact between South Asia and the Near East during the second millennium BCE. Proceedings of the National Academy of Sciences of the United States of America,118(2): e2014956117.
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2020

87 Furtwängler, A., Neukamm, J., Böhme, L., Reiter, E., Vollstedt, M., Arora, N., Singh, P., Cole, S. T., Knauf, S., Calvignac-Spencer, S., Krause-Kyora, B.,Krause, J., Schuenemann, V. J., & Herbig, A. (2020). Comparison of target enrichment strategies for ancient pathogen DNA. Biotechniques,69(6), 455-459.
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86 McDonald, S. K., Matisoo-Smith, E. A., Buckley, H. R., Walter, R. K., Aung, H. L., Collins, C. J., Cook, G. M., Kardailsky, O., Krause, J., & Knapp, M. (2020). 'TB or not TB': The conundrum of pre-European contact tuberculosis in the Pacific. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences,375(1812): 20190583.
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85 Mann, A. E., Fellows Yates, J. A.,Fagernäs, Z., Austin, R. M., Nelson, E. A., & Hofman, C. A. (2020). Do I have something in my teeth? The trouble with genetic analyses of diet from archaeological dental calculus (advance online). Quaternary International.
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84 Jeong, C.,Wang, K., Wilkin, S., Taylor, W. T. T., Miller, B. K., Bemmann, J. H., Stahl, R.,Chiovelli, C.,Knolle, F., Ulziibayar, S., Khatanbaatar, D., Erdenebaatar, D., Erdenebat, U., Ochir, A., Ankhsanaa, G., Vanchigdash, C., Ochir, B., Munkhbayar, C., Tumen, D., Kovalev, A., Kradin, N., Bazarov, B. A., Miyagashev, D. A., Konovalov, P. B., Zhambaltarova, E., Ventresca Miller, A. R., Haak, W.,Schiffels, S.,Krause, J., Boivin, N. L., Erdene, M., Hendy, J., & Warinner, C. G. (2020). A dynamic 6,000-year genetic history of Eurasia’s eastern steppe. Cell,183(4), 890-904.e29.
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83 Hölzer, M., Barf, L.-M., Lamkiewicz, K., Vorimore, F., Lataretu, M., Favaroni, A., Schnee, C., Laroucau, K., Marz, M., & Sachse, K. (2020). Comparative genome analysis of 33 chlamydia strains reveals characteristic features of Chlamydia Psittaci and closely related species. Pathogens,9(11): 899.
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82 Furtwängler, A. (2020). Genomic insights into Late Neolithic and Early Bronze Age populations of modern-day Switzerland. PhD Thesis, Universität Tübingen, Mathematisch-Naturwissenschaftliche Fakultät, Tübingen.
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81 Forth, J. H., Forth, L. F., Lycett, S., Bell-Sakyi, L., Keil, G. M., Blome, S., Calvignac-Spencer, S., Wissgott, A.,Krause, J., Höper, D., Kampen, H., & Beer, M. (2020). Identification of African swine fever virus-like elements in the soft tick genome provides insights into the virus’ evolution. BMC Biology,18(1): 136.
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80 Goude, G., Salazar-García, D. C., Power, R. C., Rivollat, M., Gourichon, L., Deguilloux, M.-F., Pemonge, M.-H., Bouby, L., & Binder, D. (2020). New insights on Neolithic food and mobility patterns in Mediterranean coastal populations. American Journal of Physical Anthropology,173(2): 24089, pp. 218-235.
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79 Siebke, I., Furtwängler, A., Steuri, N., Hafner, A., Ramstein, M., Krause, J., & Lösch, S. (2020). Crops vs. animals: Regional differences in subsistence strategies of Swiss Neolithic farmers revealed by stable isotopes. Archaeological and Anthropological Sciences,12(10): 235.
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78 Adalid-Sáinz, C., Barquera, R., Crawford, M. H., Lona-Sánchez, A., Clayton, S., Arrieta-Bolaños, E., Delgado-Aguirre, H., González-Medina, L., Pacheco-Ubaldo, H., Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Escareño-Montiel, N., Morán-Martínez, J., González-Martínez, M. d. R., Jaramillo-Rodríguez, Y., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in three populations from Coahuila, Mexico: Torreón, Saltillo and rural Coahuila. Human Immunology,81(9), 492-495.
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77 Ballesteros-Romero, M., Barquera, R., Rodríguez-López, M. E., Hernández-Zaragoza, D. I., Goné-Vázquez, I., Clayton, S., Arrieta-Bolaños, E., Escobedo-Ruíz, A., Pantoja-Torres, J. A., García-Arias, V. E., Arellano-Prado, F. P., Bravo-Acevedo, A., de Sánchez-Fernández, M. G. J., Sandoval-Sandoval, M. J., Gómez-Navarro, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., Granados, J., & Acuña-Alonzo, V. (2020). Genetic diversity of HLA system in two populations from Michoacán, Mexico: Morelia and rural Michoacán. Human Immunology,81(9), 506-509.
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76 Barquera Lozano, R. J.,Hernández-Zaragoza, D. I., Arellano-Prado, F. P., Goné-Vázquez, I., Clayton, S., Arrieta-Bolaños, E., Escobedo-Ruíz, A., García-Arias, V. E., Bravo-Acevedo, A., Rodríguez-López, M. E., Sánchez-Fernández, M. G. d. J., Sandoval-Sandoval, M. J., Gómez-Navarro, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Colima, Mexico: Colima city and rural Colima. Human Immunology,81(9), 513-515.
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75 Barquera, R., Bravo-Acevedo, A., Clayton, S., Munguía, T. J. R., Hernández-Zaragoza, D. I., Adalid-Sáinz, C., Arrieta-Bolaños, E., Aquino-Rubio, G., González-Martínez, M. d. R., Lona-Sánchez, A., Martínez-Álvarez, J. C., Arrazola-García, M. A., Delgado-Aguirre, H., González-Medina, L., Pacheco-Ubaldo, H., Juárez-Barreto, V., Benítez-Arvizu, G., Escareño-Montiel, N., la Cruz, F.-J.-d., Jaramillo-Rodríguez, Y., Salgado-Adame, A., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Nuevo León, Mexico: Monterrey and rural Nuevo León. Human Immunology,81(9): 2019.06.003, pp. 516-518.
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74 Barquera, R., Collen, E., Di, D., Buhler, S., Teixeira, J., Llamas, B., Nunes, J. M., & Sanchez-Mazas, A. (2020). Binding affinities of 438 HLA proteins to complete proteomes of seven pandemic viruses and distributions of strongest and weakest HLA peptide binders in populations worldwide. HLA Immune Response Genetics,96(3): 13956, pp. 277-298.
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73 Barquera, R.,Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Arrieta-Bolaños, E., Clayton, S., Acuña-Alonzo, V., Martínez-Álvarez, J. C., López-Gil, C., Adalid-Sáinz, C., Vega-Martínez, M. d. R., Escobedo-Ruíz, A., Juárez-Cortés, E. D., Immel, A., Pacheco-Ubaldo, H., González-Medina, L., Lona-Sánchez, A., Lara-Riegos, J., Sánchez-Fernández, M. G. d. J., Díaz-López, R., Guizar-López, G. U., Medina-Escobedo, C. E., Arrazola-García, M. A., Montiel-Hernández, G. D., Hernández-Hernández, O., la Cruz, R.-d., Rocío, F. d., Juárez-Nicolás, F., Pantoja-Torres, J. A., Rodríguez-Munguía, T. J., Juárez-Barreto, V., Delgado-Aguirre, H., Escutia-González, A. B., Goné-Vázquez, I., Benítez-Arvizu, G., Arellano-Prado, F. P., García-Arias, V. E., Rodríguez-López, M. E., Méndez-Mani, P., García-Álvarez, R., González-Martínez, M. d. R., Aquino-Rubio, G., Escareño-Montiel, N., Vázquez-Castillo, T. V., Uribe-Duarte, M. G., Ruíz-Corral, M. d. J., Ortega-Yáñez, A., Bernal-Felipe, N., Gómez-Navarro, B., Arriaga-Perea, A. J., Martínez-Bezies, V., Macías-Medrano, R. M., Aguilar-Campos, J. A., Solís-Martínez, R., Serrano-Osuna, R., Sandoval-Sandoval, M. J., Jaramillo-Rodríguez, Y., Salgado-Adame, A., Juárez-de la Cruz, F., Novelo-Garza, B., Pavón-Vargas, M. d. l. Á., Salgado-Galicia, N., Bortolini, M. C., Gallo, C., Bedoya, G., Rothhammer, F., González-José, R., Ruiz-Linares, A., Canizales-Quinteros, S., Romero-Hidalgo, S., Krause, J., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). The immunogenetic diversity of the HLA system in Mexico correlates with underlying population genetic structure. Human Immunology,81(9): 2020.06.008, pp. 461-474.
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72 Barquera, R., Juárez-Nicolás, F., Martínez-Álvarez, J. C., Ponnendai-Shanmugavel, K. S.,Hernández-Zaragoza, D. I., Vázquez-Castillo, T. V., Arrieta-Bolaños, E., Clayton, S., Solís-Martínez, R., Ortega-Yáñez, A., Arrazola-García, M. A., Immel, A., Bravo-Acevedo, A., Vega-Martínez, M. d. R., Benítez-Arvizu, G., García-Álvarez, R., Martínez-Bezies, V., Escutia-González, A., Juárez-Barreto, V., Salgado-Galicia, N., Novelo-Garza, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Chiapas, Mexico: Tuxtla Gutiérrez and rural Chiapas. Human Immunology,81(9), 563-565.
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71 Barquera, R., Lara-Riegos, J., Ponnendai-Shanmugavel, K. S.,Immel, A., Arrieta-Bolaños, E., Clayton, S., Solís-Martínez, R., Bravo-Acevedo, A., Vázquez-Castillo, T. V., Hernández-Zaragoza, D. I., Vega-Martínez, M. d. R., Salgado-Galicia, N., Medina-Escobedo, C. E., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Campeche, Mexico: Campeche city and rural Campeche. Human Immunology,81(9), 566-568.
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70 Barquera, R., López-Gil, C., Acuña-Alonzo, V., Vega-Martínez, M. d. R., Rodríguez-Munguía, T. J., Martínez-Álvarez, J. C., Arrieta-Bolaños, E., Clayton, S., la Cruz, F.-d.-R.-R.-d., Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Benítez-Arvizu, G., Arrazola-García, M. A., Aquino-Rubio, G., Juárez-Barreto, V., Méndez-Mani, P., Vázquez-Castillo, T. V., Salgado-Galicia, N., Solís-Martínez, R., de Pavón-Vargas, M. l. Á., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in seven populations from Veracruz, Mexico: Veracruz city, Coatzacoalcos, Córdoba, Orizaba, Poza Rica, Xalapa and rural Veracruz. Human Immunology,81(9), 531-534.
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69 Barquera, R., Martínez-Álvarez, J. C., Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Juárez-Nicolás, F., Arriaga-Perea, A. J., Vega-Martínez, M. d. R., Ortega-Yáñez, A., Benítez-Arvizu, G., Arrieta-Bolaños, E., Clayton, S., Juárez-Cortés, E. D., López-Gil, C., García-Álvarez, R., Arrazola-García, M. A., Martínez-Bezies, V., Juárez-Barreto, V., la Cruz, F.-d.-R.-R.-d., Macías-Medrano, R. M., Méndez-Mani, P., Escutia-González, A., Montiel-Hernández, G. D., Immel, A., de Pavón-Vargas, M. l. Á., Salgado-Galicia, N., Novelo-Garza, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in six populations from Mexico City Metropolitan Area, Mexico: Mexico City North, Mexico City South, Mexico City East, Mexico City West, Mexico City Center and rural Mexico City. Human Immunology,81(9), 539-543.
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68 Barquera, R., Martínez-Álvarez, J. C., Trejo-Ordoz, A. V., de Pavón-Vargas, M. l. Á., Vega-Martínez, M. d. R., Arrieta-Bolaños, E., Clayton, S., Ortega-Yáñez, A., Juárez-Cortés, E. D., Juárez-Nicolás, F., López-Gil, C., Immel, A., Arrazola-García, M. A., Juárez-Barreto, V., Benítez-Arvizu, G., Arriaga-Perea, A. J., Martínez-Bezies, V., Macías-Medrano, R. M., la Cruz, F.-d.-R.-R.-d., Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Méndez-Mani, P., Escutia-González, A. B., Montiel-Hernández, G. D., García-Álvarez, R., Salgado-Galicia, N., Novelo-Garza, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Hidalgo, Mexico: Pachuca and rural Hidalgo. Human Immunology,81(9), 535-538.
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67 Bravo-Acevedo, A., Barquera, R., Arrieta-Bolaños, E., Hernández-Zaragoza, D. I.,Clayton, S., Goné-Vázquez, I., Escobedo-Ruíz, A., Pantoja-Torres, J. A., Adalid-Sáinz, C., Pacheco-Ubaldo, H., Martínez-Álvarez, J. C., González-Martínez, M. d. R., Lona-Sánchez, A., González-Medina, L., Escareño-Montiel, N., Arrazola-García, M. A., Juárez-Barreto, V., Benítez-Arvizu, G., Delgado-Aguirre, H., de Sánchez-Fernández, M. G. J., Sandoval-Sandoval, M. J., Jaramillo-Rodríguez, Y., Gómez-Navarro, B., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in a population sample from Aguascalientes, Mexico. Human Immunology,81(9), 519-521.
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66 Bravo-Acevedo, A., Escobedo-Ruíz, A., Barquera, R.,Clayton, S., García-Arias, V. E., Arrieta-Bolaños, E., Goné-Vázquez, I., Hernández-Zaragoza, D. I., Arellano-Prado, F. P., Rodríguez-López, M. E., de Sánchez-Fernández, M. G. J., Sandoval-Sandoval, M. J., Gómez-Navarro, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in six populations from Jalisco, Mexico: Guadalajara city, Tlajomulco, Tlaquepaque, Tonalá, Zapopan and rural Jalisco. Human Immunology,81(9), 502-505.
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65 Clayton, S.,Barquera, R., Uribe-Duarte, M. G., Vázquez, I. G., Zúñiga, J., Arrieta-Bolaños, E., Hernández-Zaragoza, D. I., de Ruíz-Corral, M. J., Escobedo-Ruíz, A., Arellano-Prado, F. P., García-Arias, V. E., Rodríguez-López, M. E., Bravo-Acevedo, A., de Sánchez-Fernández, M. G. J., Aguilar-Campos, J. A., Serrano-Osuna, R., Gómez-Navarro, B., Sandoval-Sandoval, M. J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Sinaloa, Mexico: Culiacán and rural Sinaloa. Human Immunology,81(9), 482-484.
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64 de Pavón-Vargas, M. l. Á., Crawford, M. H., Barquera, R., López-Gil, C., Arrieta-Bolaños, E., Clayton, S.,Hernández-Zaragoza, D. I., Bravo-Acevedo, A., la Cruz, F.-d.-R.-R.-d., Méndez-Mani, P., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Tlaxcala, Mexico: Tlaxcala city and rural Tlaxcala. Human Immunology,81(9), 544-546.
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63 Escobedo-Ruíz, A., Barquera, R., González-Martín, A., Millán, J.-M.-A.-S., Uribe-Duarte, M. G., Hernández-Zaragoza, D. I.,Clayton, S., Arrieta-Bolaños, E., de Ruíz-Corral, M. J., Goné-Vázquez, I., Arellano-Prado, F. P., Martínez-Álvarez, J. C., García-Arias, V. E., Rodríguez-López, M. E., Bravo-Acevedo, A., de Sánchez-Fernández, M. G. J., Aguilar-Campos, J. A., Gómez-Navarro, B., Sandoval-Sandoval, M. J., Serrano-Osuna, R., Yunis, E. J., Zúñiga, J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in four populations from Baja California, Mexico: Mexicali, La Paz, Tijuana and rural Baja California. Human Immunology,81(9): 2019.06.007, pp. 475-477.
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62 Fellows Yates, J. A.,Andrades Valtueña, A., Vågene, A. J., Cribdon, B., Velsko, I. M.,Borry, M., Bravo-López, M. J., Fernandez-Guerra, A., Green, E. J., Ramachandran, S. L., Heintzman, P. D., Spyrou, M. A.,Hübner, A., Gancz, A. S., Hider, J., Allshouse, A. F., & Warinner, C. G. (2020). Community-curated and standardised metadata of published ancient metagenomic samples with AncientMetagenomeDir. bioRxiv.
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61 Fischer, M. S., Hoßfeld, U., Krause, J., & Richter, S. (2020). Jena, Haeckel und die Frage nach den Menschenrassen oder der Rassismus macht Rassen [Preprint]. Zoologie: Mitteilungen der Deutschen Zoologischen Gesellschaft.
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60 Gil, C. L., Barquera, R., de Pavón-Vargas, M. l. Á., la Cruz, F.-d.-R.-R.-d., Méndez-Mani, P., Arrieta-Bolaños, E., Clayton, S.,Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Puebla, Mexico: Puebla city and rural Puebla. Human Immunology,81(9), 547-549.
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59 Goné-Vázquez, I., Barquera, R., Arellano-Prado, F. P., Hernández-Zaragoza, D. I., Escobedo-Ruíz, A., Clayton, S., Arrieta-Bolaños, E., García-Arias, V. E., Rodríguez-López, M. E., Bravo-Acevedo, A., de Sánchez-Fernández, M. G. J., Sandoval-Sandoval, M. J., Gómez-Navarro, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Nayarit, Mexico: Tepic and rural Nayarit. Human Immunology,81(9), 499-501.
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58 González-Medina, L., Barquera, R., Delgado-Aguirre, H., Clayton, S., Adalid-Sáinz, C., Arrieta-Bolaños, E., Pacheco-Ubaldo, H., Hernández-Zaragoza, D. I., Escareño-Montiel, N., Morán-Martínez, J., Bravo-Acevedo, A., Lona-Sánchez, A., González-Martínez, M. d. R., Jaramillo-Rodríguez, Y., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Durango, Mexico: Durango city and rural Durango. Human Immunology,81(9), 489-491.
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57 Hernández-Hernández, O., Hernández-Zaragoza, D. I.,Barquera, R.,Warinner, C. G., López-Gil, C., Arrieta-Bolaños, E., Clayton, S., Bravo-Acevedo, A., la Cruz, F.-d.-R.-R.-d., Méndez-Mani, P., de Pavón-Vargas, M. l. Á., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Oaxaca, Mexico: Oaxaca city and rural Oaxaca. Human Immunology,81(9), 553-556.
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56 Hernández-Zaragoza, D. I., Rodríguez-Munguía, T. J., Barquera, R., Adalid-Sáinz, C., Arrieta-Bolaños, E., Clayton, S., Pacheco-Ubaldo, H., González-Medina, L., Lona-Sánchez, A., Bravo-Acevedo, A., Aquino-Rubio, G., González-Martínez, M. d. R., Delgado-Aguirre, H., Escareño-Montiel, N., Jaramillo-Rodríguez, Y., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from San Luis Potosí, Mexico: San Luis Potosí City and rural San Luis Potosí. Human Immunology,81(9), 528-530.
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55 Juárez-Nicolás, F., Barquera, R., Martínez-Álvarez, J. C., Hernández-Zaragoza, D. I., Ortega-Yáñez, A., Arrieta-Bolaños, E., Clayton, S., Bravo-Acevedo, A., Arrazola-García, M. A., Immel, A., Juárez-Barreto, V., Benítez-Arvizu, G., Vega-Martínez, M. d. R., García-Álvarez, R., Martínez-Bezies, V., Escutia-González, A. B., Díaz-López, R., Guizar-López, G. U., Salgado-Galicia, N., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in a population from Guerrero, Mexico. Human Immunology,81(9), 550-552.
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54 Lara-Riegos, J., Barquera, R., Castillo-Chávez, O. d., Medina-Escobedo, C. E., Hernández-Zaragoza, D. I., Arrieta-Bolaños, E., Clayton, S., Ponnandai-Shanmugavel, K. S., Bravo-Acevedo, A., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Yucatán, Mexico: Mérida and rural Yucatán. Human Immunology,81, 569-572.
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53 Martínez-Álvarez, J. C., Barquera Lozano, R. J.,Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Clayton, S., Arrieta-Bolaños, E., Immel, A., Benítez-Arvizu, G., Arrazola-García, M. A., Juárez-Barreto, V., Vega-Martínez, M. d. R., Juárez-Nicolás, F., Escutia-González, A. B., Martínez-Bezies, V., García-Álvarez, R., Salgado-Galicia, N., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Querétaro, Mexico: Querétaro city and rural Querétaro. Human Immunology,81(9), 522-524.
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52 Medina-Escobedo, C. E., Barquera, R., Ponnandai-Shanmugavel, K. S., Lara-Riegos, J., Bravo-Acevedo, A., Arrieta-Bolaños, E., Clayton, S.,Hernández-Zaragoza, D. I., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Quintana Roo, Mexico: Cancún and rural Quintana Roo. Human Immunology,81(9), 573-575.
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51 Ortega-Yáñez, A., Barquera, R., Curiel-Giles, L., Martínez-Álvarez, J. C., Macías-Medrano, R. M., Arrieta-Bolaños, E., Clayton, S., Bravo-Acevedo, A., Hernández-Zaragoza, D. I.,Immel, A., Vega-Martínez, M. d. R., Benítez-Arvizu, G., Arrazola-García, M. A., Arriaga-Perea, A. J., Juárez-Cortés, E. D., Juárez-Barreto, V., Salgado-Galicia, N., Novelo-Garza, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Morelos, Mexico: Cuernavaca and rural Morelos. Human Immunology,81(9), 557-559.
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50 Pacheco-Ubaldo, H., Adalid-Sáinz, C., Barquera, R.,Clayton, S., Arrieta-Bolaños, E., Delgado-Aguirre, H., González-Medina, L., Hernández-Zaragoza, D. I., Escareño-Montiel, N., Morán-Martínez, J., Bravo-Acevedo, A., Lona-Sánchez, A., González-Martínez, M. d. R., Jaramillo-Rodríguez, Y., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in three populations from Chihuahua, Mexico: Chihuahua City, Ciudad Juárez and rural Chihuahua. Human Immunology,81(9), 485-488.
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49 Pantoja-Torres, J. A., Barquera, R., Ballesteros-Romero, M., Bravo-Acevedo, A., Arrieta-Bolaños, E., Montiel-Hernández, G. D., Clayton, S., Rodríguez-Rodríguez, L. I., Hernández-Zaragoza, D. I., Goné-Vázquez, I., Escobedo-Ruíz, A., García-Arias, V. E., Arellano-Prado, F. P., Rodríguez-López, M. E., de Sánchez-Fernández, M. G. J., Sandoval-Sandoval, M. J., Gómez-Navarro, B., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in three populations from Guanajuato, Mexico: Guanajuato City, León and rural Guanajuato. Human Immunology,81(9), 510-512.
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48 Rodríguez-Munguía, T. J., Barquera, R., Adalid-Sáinz, C., Hernández-Zaragoza, D. I., Arrieta-Bolaños, E., Clayton, S., Aquino-Rubio, G., González-Martínez, M. d. R., Pacheco-Ubaldo, H., González-Medina, L., Lona-Sánchez, A., Bravo-Acevedo, A., Delgado-Aguirre, H., Escareño-Montiel, N., Jaramillo-Rodríguez, Y., Salgado-Adame, A., la Cruz, F.-J.-d., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Tamaulipas, Mexico: Ciudad Victoria and rural Tamaulipas. Human Immunology,81(9), 525-527.
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47 Solís-Martínez, R., Barquera, R.,Ponnendai-Shanmugavel, K. S., Vega-Martínez, M. d. R., Vázquez-Castillo, T. V., Arrieta-Bolaños, E., Clayton, S.,Hernández-Zaragoza, D. I., Bravo-Acevedo, A., Immel, A., Salgado-Galicia, N., Zúñiga, J., Yunis, E. J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in two populations from Tabasco, Mexico: Villahermosa and rural Tabasco. Human Immunology,81(9), 560-562.
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46 Uribe-Duarte, M. G., Aguilar-Campos, J. A., Barquera, R., Bravo-Acevedo, A., Clayton, S., Arrieta-Bolaños, E., de Ruíz-Corral, M. J., Hernández-Zaragoza, D. I., Serrano-Osuna, R., Yunis, E. J., Zúñiga, J., Bekker-Méndez, C., & Granados, J. (2020). Genetic diversity of HLA system in three populations from Sonora, Mexico: Ciudad Obregón, Hermosillo and rural Sonora. Human Immunology,81(9), 478-481.
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45 Neukamm, J., Pfrengle, S., Molak, M., Seitz, A., Francken, M., Eppenberger, P., Avanzi, C., Reiter, E., Urban, C., Welte, B., Stockhammer, P. W., Teßmann, B., Herbig, A., Harvati, K., Nieselt, K., Krause, J., & Schuenemann, V. J. (2020). 2000-year-old pathogen genomes reconstructed from metagenomic analysis of Egyptian mummified individuals. BMC Biology,18(1): 108.
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44 Majander, K., Pfrengle, S., Kocher, A., Neukamm, J., du Plessis, L., Pla-Díaz, M., Arora, N., Akgül, G., Salo, K., Schats, R., Inskip, S., Oinonen, M., Valk, H., Malve, M., Kriiska, A., Onkamo, P., González-Candelas, F., Kühnert, D., Krause, J., & Schuenemann, V. J. (2020). Ancient bacterial genomes reveal a high diversity of Treponema pallidum Strains in early Modern Europe. Current Biology,30: 2020.07.058, pp. 1-16.
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43 Romero-Hidalgo, S., Flores-Rivera, J., Rivas-Alonso, V., Barquera, R., Villarreal-Molina, M. T., Antuna-Puente, B., Macias-Kauffer, L. R., Villalobos-Comparán, M., Ortiz-Maldonado, J., Yu, N., Lebedeva, T. V., Alosco, S. M., García-Rodríguez, J. D., González-Torres, C., Rosas-Madrigal, S., Ordoñez, G., Guerrero-Camacho, J. L., Treviño-Frenk, I., Escamilla-Tilch, M., García-Lechuga, M., Tovar-Méndez, V. H., Pacheco-Ubaldo, H., Acuña-Alonzo, V., Bortolini, M.-C., Gallo, C., Bedoya, G., Rothhammer, F., González-Jose, R., Ruiz-Linares, A., Canizales-Quinteros, S., Yunis, E., Granados, J., & Corona, T. (2020). Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population. Scientific Reports,10(1): 13706, pp. 1-11.
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42 Landini, A., Yu, S., Gnecchi-Ruscone, G. A., Abondio, P., Ojeda-Granados, C., Sarno, S., De Fanti, S., Gentilini, D., Blasio, D., M., A., Jin, H., Nguyen, T. T., Romeo, G., Prata, C., Bortolini, E., Luiselli, D., Pettener, D., & Sazzini, M. (2020). Genomic adaptations to cereal-based diets contribute to mitigate metabolic risk in some human populations of East Asian ancestry (advance online). Evolutionary Applications, 13090.
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41 Barquera, R., & Krause, J. (2020). An ancient view on host pathogen interaction across time and space. Current Opinion in Immunology,65, 65-69.
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40 Nägele, K.,Posth, C., Iraeta Orbegozo, M., Chinique de Armas, Y., Godoy, H., Teresita, S., Herrera, G., M., U., Nieves-Colón, M. A., Sandoval-Velasco, M., Mylopotamitaki, D., Radzeviciute, R., Laffoon, J., Pestle, W. J., Ramos-Madrigal, J., Lamnidis, T. C., Schaffer, W. C., Carr, R. S., Day, J. S., Arredondo Antúnez, C., Rangel Rivero, A., Martínez-Fuentes, A. J., Crespo-Torres, E., Roksandic, I., Stone, A. C., Lalueza-Fox, C., Hoogland, M., Roksandic, M., Hofman, C. L., Krause, J., & Schroeder, H. (2020). Genomic insights into the early peopling of the Caribbean. Science,369(6502), 456-460.
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39 Kutanan, W., Shoocongdej, R., Srikummool, M., Hübner, A., Suttipai, T., Srithawong, S., Kampuansai, J., & Stoneking, M. (2020). Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand. European Journal of Human Genetics,28, 1563-1579.
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38 Peyrégne, S., & Prüfer, K. (2020). Present-Day DNA contamination in ancient DNA datasets. BioEssays,42: 2000081.
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37 Sanchez, P., Espinosa, M., Maldonado, V., Barquera, R., Belem-Gabiño, N., Torres, J., Cravioto, A., & Melendez-Zajgla, J. (2020). Pancreatic ductal adenocarcinomas from Mexican patients present a distinct genomic mutational pattern. Molecular Biology Reports,47, 5175-5184.
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36 Scherberich, J., Taszus, R., Stoessel, A., & Nowotny, M. (2020). Comparative micromechanics of bushcricket ears with and without a specialized auditory fovea region in the crista acustica. Proceedings of the Royal Society B: Biological Sciences,287(1929): 20200909.
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35 Dávalos, L. M., Austin, R. M., Balisi, M. A., Begay, R. L., Hofman, C. A., Kemp, M. E., Lund, J. R., Monroe, C., Mychajliw, A. M., Nelson, E. A., Nieves-Colón, M. A., Redondo, S. A., Sabin, S., Tsosie, K. S., & Yracheta, J. M. (2020). Pandemics' historical role in creating inequality. Science,368: 6497, pp. 1322-1323.
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34 Wang, K., Goldstein, S. T., Bleasdale, M., Clist, B., Bostoen, K., Bakwa-Lufu, P., Buck, L. T., Crowther, A., Dème, A., McIntosh, R. J., Mercader, J., Ogola, C., Power, R. C., Sawchuk, E. A., Robertshaw, P., Wilmsen, E. N., Petraglia, M. D., Ndiema, E., Manthi, F. K., Krause, J., Roberts, P., Boivin, N. L., & Schiffels, S. (2020). Ancient genomes reveal complex patterns of population movement, interaction, and replacement in sub-Saharan Africa. Science Advances,6(24): eaaz0183.
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33 Giffin, K.,Lankapalli, A. K.,Sabin, S.,Spyrou, M. A.,Posth, C., Kozakaitė, J., Friedrich, R., Miliauskienė, Ž., Jankauskas, R., Herbig, A., & Bos, K. I. (2020). A treponemal genome from an historic plague victim supports a recent emergence of yaws and its presence in 15th century Europe. Scientific Reports,10(1): 9499.
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32 Yu, H.,Spyrou, M. A., Karapetian, M., Shnaider, S., Radzeviciute, R.,Nägele, K.,Neumann, G. U., Penske, S. E., Zech, J., Lucas, M., LeRoux, P., Roberts, P., Pavlenok, G., Buzhilova, A., Posth, C.,Jeong, C., & Krause, J. (2020). Paleolithic to Bronze Age Siberians reveal connections with first Americans and across Eurasia. Cell,181(6), 1232-1245.e20.
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31 Barquera, R.,Lamnidis, T. C.,Lankapalli, A. K., Kocher, A., Hernández-Zaragoza, D. I.,Nelson, E. A., Zamora-Herrera, A. C., Perez Ramallo, P., Bernal-Felipe, N., Immel, A.,Bos, K., Acuña-Alonzo, V., Barbieri, C., Roberts, P., Herbig, A., Kühnert, D., Márquez-Morfín, L., & Krause, J. (2020). Origin and health status of first-generation Africans from early colonial Mexico. Current Biology,30(11): 2020.04.002, pp. 2078-2091.e11.
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30 Fagernäs, Z., García-Collado, M. I., Hendy, J., Hofman, C. A., Speller, C., Velsko, I. M., & Warinner, C. (2020). A unified protocol for simultaneous extraction of DNA and proteins from archaeological dental calculus. Journal of Archaeological Science,118: 105135.
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29 Nelson, E. A., Buikstra, J. E., Herbig, A., Tung, T. A., & Bos, K. I. (2020). Advances in the molecular detection of tuberculosis in pre-contact Andean South America. International Journel of Paleopathology,42(9): 2000081.
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28 Ning, C., Li, T., Wang, K., Zhang, F., Li, T., Wu, X., Gao, S., Zhang, Q., Zhang, H., Hudson, M., Dong, G., Wu, S., Fang, Y., Liu, C., Feng, C., Li, W., Han, T., Li, R., Wei, J., Zhu, Y., Zhou, Y., Wang, C.-C., Fan, S., Xiong, Z., Sun, Z., Ye, M., Sun, L., Wu, X., Liang, F., Cao, Y., Wei, X., Zhu, H., Zhou, H., Krause, J., Robbeets, M., Jeong, C., & Cui, Y. (2020). Ancient genomes from northern China suggest links between subsistence changes and human migration. Nature Communications,11: 2700.
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27 Olalde, I., & Posth, C. (2020). Latest trends in archaeogenetic research of west Eurasians. Current Opinion in Genetics & Development,62, 36-43.
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26 Rivollat, M.,Jeong, C.,Schiffels, S., Kücükkalıpcı, İ., Pemonge, M.-H., Rohrlach, A. B., Alt, K. W., Binder, D., Friederich, S., Ghesquière, E., Gronenborn, D., Laporte, L., Lefranc, P., Meller, H., Réveillas, H., Rosenstock, E., Rottier, S., Scarre, C., Soler, L., Wahl, J., Krause, J., Deguilloux, M.-F., & Haak, W. (2020). Ancient genome-wide DNA from France highlights the complexity of interactions between Mesolithic hunter-gatherers and Neolithic farmers. Science Advances,6(22): eaaz5344.
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25 Skourtanioti, E., Erdal, Y. S., Frangipane, M., Balossi Restelli, F., Yener, K. A., Pinnock, F., Matthiae, P., Özbal, R., Schoop, U.-D., Guliyev, F., Akhundov, T., Lyonnet, B., Hammer, E. L., Nugent, S. E., Burri, M.,Neumann, G. U., Penske, S. E., Ingman, T., Akar, M., Shafiq, R., Palumbi, G., Eisenmann, S., D’Andrea, M., Rohrlach, A. B.,Warinner, C.,Jeong, C.,Stockhammer, P. W.,Haak, W., & Krause, J. (2020). Genomic history of Neolithic to Bronze Age Anatolia, Northern Levant, and Southern Caucasus. Cell,181(5), 1158-1175.e28.
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24 Parker, E. C.,Rohrlach, A. B., Friederich, S., Nagel, S., Meyer, M., Krause, J.,Bos, K. I., & Haak, W. (2020). A systematic investigation of human DNA preservation in medieval skeletons. Scientific Reports,10(1): 18225.
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23 Loog, L., Thalmann, O., Sinding, M.-H.-S., Schuenemann, V. J., Perri, A., Germonpré, M., Bocherens, H., Witt, K. E., Samaniego Castruita, J. A., Velasco, M. S., Lundstrøm, I. K. C., Wales, N., Sonet, G., Frantz, L., Schroeder, H., Budd, J., Jimenez, E.-L., Fedorov, S., Gasparyan, B., Kandel, A. W., Lázničková-Galetová, M., Napierala, H., Uerpmann, H.-P., Nikolskiy, P. A., Pavlova, E. Y., Pitulko, V. V., Herzig, K.-H., Malhi, R. S., Willerslev, E., Hansen, A. J., Dobney, K., Gilbert, M. T. P., Krause, J., Larson, G., Eriksson, A., & Manica, A. (2020). Ancient DNA suggests modern wolves trace their origin to a Late Pleistocene expansion from Beringia. Molecular Ecology,29(9): 15329, pp. 1596-1610.
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22 Musralina, L. Z., Djansugurova, L. B., & Krause, J. (2020). Features of the study of ancient pathogens. Журнал проблем эволюции открытых систем,22(1), 83-89.
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21 Nakatsuka, N., Lazaridis, I., Barbieri, C., Skoglund, P., Rohland, N., Mallick, S., Posth, C., Harkins-Kinkaid, K., Ferry, M., Harney, É., Michel, M., Stewardson, K., Novak-Forst, J., Capriles, J. M., Durruty, M. A., Álvarez, K. A., Beresford-Jones, D., Burger, R., Cadwallader, L., Fujita, R., Isla, J., Lau, G., Aguirre, C. L., LeBlanc, S., Maldonado, S. C., Meddens, F., Messineo, P. G., Culleton, B. J., Harper, T. K., Quilter, J., Politis, G., Rademaker, K., Reindel, M., Rivera, M., Salazar, L., Sandoval, J. R., Santoro, C. M., Scheifler, N., Standen, V., Barreto, M. I., Espinoza, I. F., Tomasto-Cagigao, E., Valverde, G., Kennett, D. J., Cooper, A., Krause, J.,Haak, W., Llamas, B., Reich, D., & Fehren-Schmitz, L. (2020). A paleogenomic reconstruction of the deep population history of the Ande. Cell,181(5): 2020.04.015, pp. 1131-1145.e21.
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20 Furtwängler, A.,Rohrlach, A. B.,Lamnidis, T. C.,Papac, L.,Neumann, G., Siebke, I., Reiter, E., Steuri, N., Hald, J., Denaire, A., Schnitzler, B., Wahl, J., Ramstein, M., Schuenemann, V. J., Stockhammer, P. W., Hafner, A., Lösch, S., Haak, W.,Schiffels, S., & Krause, J. (2020). Ancient genomes reveal social and genetic structure of Late Neolithic Switzerland. Nature Communications,11: 1915.
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19 Borry, M.,Cordova, B., Perri, A., Wibowo, M., Honap, T. P., Ko, J., Yu, J., Britton, K., Girdland-Flink, L., Power, R. C., Stuijts, I., Salazar-García, D. C., Hofman, C., Hagan, R., Kagoné, T. S., Meda, N., Carabin, H., Jacobson, D., Reinhard, K., Lewis, C., Kostic, A., Jeong, C.,Herbig, A.,Hübner, A., & Warinner, C. (2020). CoproID predicts the source of coprolites and paleofeces using microbiome composition and host DNA content. PeerJ, 8:e9001.
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18 Loosdrecht, M. S. v. d., Mannino, M. A., Talamo, S., Villalba-Mouco, V.,Posth, C.,Aron, F.,Brandt, G.,Burri, M., Freund, C., Radzeviciute, R.,Stahl, R.,Wissgott, A., Klausnitzer, L., Nagel, S., Meyer, M., Tagliacozzo, A., Piperno, M., Tusa, S., Collina, C., Schimmenti, V., Salvo, R. D., Prüfer, K., Hublin, J.-J., Schiffels, S.,Jeong, C.,Haak, W., & Krause, J. (2020). Genomic and dietary transitions during the Mesolithic and Early Neolithic in Sicily. bioRxiv, 986158.
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17 Wilkin, S., Ventresca Miller, A., Taylor, W. T. T., Miller, B. K., Hagan, R., Bleasdale, M., Scott, A., Gankhuyg, S., Ramsøe, A., Uliziibayar, S., Trachsel, C., Nanni, P., Grossmann, J., Orlando, L., Horton, M., Stockhammer, P. W., Myagmar, E., Boivin, N., Warinner, C., & Hendy, J. (2020). Dairy pastoralism sustained eastern Eurasian steppe populations for 5,000 years. Nature Ecology & Evolution,4(3), 346-355.
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16 Arrieta-Bolaños, E., Oliveira, D. C., & Barquera, R. (2020). Differential admixture, human leukocyte antigen diversity, and hematopoietic cell transplantation in Latin America: challenges and opportunities. Bone Marrow Transplantation,55(3), 496-504.
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15 Key, F. M.,Posth, C., Esquivel Gomez, L. R., Hübler, R.,Spyrou, M. A.,Neumann, G. U., Furtwängler, A.,Sabin, S.,Burri Promerová, M.,Wissgott, A.,Lankapalli, A. K., Vågene, Å. J., Meyer, M., Nagel, S., Tukhbatova, R., Khokhlov, A., Chizhevsky, A., Hansen, S., Belinsky, A. B., Kalmykov, A., Kantorovich, A. R., Maslov, V. E., Stockhammer, P. W., Vai, S., Zavattaro, M., Riga, A., Caramelli, D., Skeates, R., Beckett, J., Gradoli, M. G., Steuri, N., Hafner, A., Ramstein, M., Siebke, I., Lösch, S., Erdal, Y. S., Alikhan, N.-F., Zhou, Z., Achtman, M., Bos, K., Reinhold, S., Haak, W., Kühnert, D., Herbig, A., & Krause, J. (2020). Emergence of human-adapted Salmonella enterica is linked to the Neolithization process. Nature Ecology & Evolution,4(3), 324-333.
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14 Rurua, V. A., Béarez, P., Hermann, A., & Conte, E. (2020). Length and weight reconstruction of Chlorurus microrhinos (Scaridae) from isolated cranial bones and vertebrae. Cybium: International Journal of Ichthyology,44(1), 61-68.
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13 Wang, K., Mathieson, I., O'Connell, J., & Schiffels, S. (2020). Tracking human population structure through time from whole genome sequences. PLoS Genetics,16(3): e1008552, pp. 1-24.
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12 Barquera, R., Zuniga, J., Flores-Rivera, J., Corona, T., Penman, B. S., Hernández-Zaragoza, D. I., Soler, M., Jonapá-Gómez, L., Mallempati, K. C., Yescas, P., Ochoa-Morales, A., Barsakis, K., Aguilar-Vázquez, J. A., García-Lechuga, M., Mindrinos, M., Yunis, M., Jiménez-Alvarez, L., Mena-Hernández, L., Ortega, E., Cruz-Lagunas, A., Tovar-Méndez, V. H., Granados, J., Fernández-Viña, M., & Yunis, E. (2020). Diversity of HLA Class I and Class II blocks and conserved extended haplotypes in Lacandon Mayans. Scientific Reports,10(1): 3248.
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11 Marcus, J. H., Posth, C., Ringbauer, H., Lai, L., Skeates, R., Sidore, C., Beckett, J., Furtwängler, A., Olivieri, A., Chiang, C. W. K., Al-Asadi, H., Dey, K., Joseph, T. A., Liu, C.-C., Der Sarkissian, C., Radzeviciute, R., Michel, M., Gradoli, M. G., Marongiu, P., Rubino, S., Mazzarello, V., Rovina, D., La Fragola, A., Serra, R. M., Bandiera, P., Bianucci, R., Pompianu, E., Murgia, C., Guirguis, M., Orquin, R. P., Tuross, N., van Dommelen, P., Haak, W., Reich, D., Schlessinger, D., Cucca, F., Krause, J., & Novembre, J. (2020). Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia. Nature Communications,11(1): 939.
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10 Alt, K. W., Tejedor Rodríguez, C., Nicklisch, N., Roth, D., Szécsényi Nagy, A., Knipper, C., Lindauer, S., Held, P., Martínez de Lagrán, Í. G., Schulz, G., Schuerch, T., Thieringer, F., Brantner, P., Brandt, G., Israel, N., Arcusa Magallón, H., Meyer, C., Mende, B. G., Enzmann, F., Dresely, V., Ramsthaler, F., Guillén, J. I. R., Scheurer, E., López Montalvo, E., Garrido Pena, R., Pichler, S. L., & Guerra, M. A. R. (2020). A massacre of early Neolithic farmers in the high Pyrenees at Els Trocs, Spain. Scientific Reports,10: 2131.
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9 Feldman, M. (2020). Tracing past human mobility and disease in western Eurasia by the genetic analysis of ancient human remains. PhD Thesis, Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften, Jena.
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8 Tromp, M., Matisoo-Smith, E., Kinaston, R., Bedford, S., Spriggs, M., & Buckley, H. (2020). Exploitation and utilization of tropical rainforests indicated in dental calculus of ancient Oceanic Lapita culture colonists. Nature Human Behaviour,4, 489-495.
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7 Belinskiy, A., Hansen, S., Haak, W.,Wang, C. C., Reinhold, S., Kalmykov, A., Krause, J., Berezina, N., Buzhilova, A., Knipper, C., Gerling, C., Pichler, S., Alt, K., Erlikh, V., Kantorovich, A., Maslov, V., Trifonov, V., Rezepkin, A., Atabiev, B., Magomedov, R., & Kohl, P. (2020). New approaches in Bioarcheology of the north caucasus: 5 years bioarccaucasus & genetic history of the caucasus; first results, surprises and implications. In Institute of History, Archaeology and Ethnography Daghestan Federal Research Centre of the Russian Academy of Sciences, Agency for Protection of Cultural Heritage of the Republic of Daghestan, Research and Production Center for Tourism and Local History, & Research and Production Center “DARS” (Eds.), Archaeological heritage of the Caucasus: Topical Problems of Study and Preservation; The XXXist Kurpnov's readings (pp. 165-166). Mavraev: Makhachkala Publishing House.
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6 Fellows Yates, J. A.,Lamnidis, T. C.,Borry, M.,Andrades Valtueña, A.,Fagernäs, Z.,Clayton, S., Garcia, M. U., Neukamm, J., & Peltzer, A. (2020). Reproducible, portable, and efficient ancient genome reconstruction with nf-core/eager. bioRxiv.
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5 Ghalici, A., Reinhold, S., Magomedov, R., Belinskiy, A., Kalmykov, A., Krause, J., Berezina, N., Buzhilova, A., Haak, W., & Hansen, S. (2020). The genetics of Caucasus mountain dwellers: First results from Dagestan Bronze Age sites. In Institute of History, Archaeology and Ethnography Daghestan Federal Research Centre of the Russian Academy of Sciences, Agency for Protection of Cultural Heritage of the Republic of Daghestan, Research and Production Center for Tourism and Local History, & Research and Production Center “DARS” (Eds.), Archaeological heritage of the Caucasus: Topical Problems of Study and Preservation; The XXXist Kurpnov's readings (pp. 167-168). Mavraev: Makhachkala Publishing House.
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4 Papathanasiou, A., Tiliakou, A., Kwok, C. S., Moutafi, I., & Kakavogianni, O. (2020). The human remains of the Late Bronze Age cemetery of Glyka Nera. In N. Papadimitriou, J. C. Wright, S. Fachard, & N. Polychronakou-Sgouritsa (Eds.), Αthens and Attica in prehistory: Proceedings of the International Conference Athens, 27-31 May 2015 (pp. 503-512). Oxford: Archaeopress.
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3 Romero-Hidalgo, S., Flores-Rivera, J., Rivas-Alonso, V., Barquera Lozano, R. J., Villarreal-Molina, M. T., Antuna-Puente, B., Macias-Kauffer, L. R., Villalobos-Comparán, M., Ortiz-Maldonado, J., Yu, N., Lebedeva, T. V., Alosco, S. M., García-Rodríguez, J. D., González-Torres, C., Rosas-Madrigal, S., Ordoñez, G., Guerrero-Camacho, J. L., Treviño-Frenk, I., Escamilla-Tilch, M., García-Lechuga, M., Tovar-Méndez, V. H., Pacheco-Ubaldo, H., Acuña-Alonzo, V., Bortolini, M.-C., Gallo, C., Bedoya, G., Rothhammer, F., González-Jose, R., Ruiz-Linares, A., Canizales-Quinteros, S., Yunis, E., Granados, J., & Corona, T. (2020). Native American ancestry significantly contributes to neuromyelitis optica susceptibility in the admixed Mexican population. Scientific Reports,10: 13706.
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2 Sazzini, M., Abondio, P., Sarno, S., Gnecchi-Ruscone, G. A., Ragno, M., Giuliani, C., De Fanti, S., Ojeda-Granados, C., Boattini, A., Marquis, J., Valsesia, A., Carayol, J., Raymond, F., Pirazzini, C., Marasco, E., Ferrarini, A., Xumerle, L., Collino, S., Mari, D., Arosio, B., Monti, D., Passarino, G., D'Aquila, P., Pettener, D., Luiselli, D., Castellani, G., Delledonne, M., Descombes, P., Franceschi, C., & Garagnani, P. (2020). Genomic history of the Italian population recapitulates key evolutionary dynamics of both Continental and Southern Europeans. BMC Biology,18(1): 51.
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1 Schiffels, S., & Wang, K. (2020). MSMC and MSMC2: the multiple sequentially markovian coalescent. In J. Y. Dutheil (Ed.), Statistical population genomics (pp. 147-165). New York, NY: Humana.
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2019

60 Hübler, R.,Key, F. M.,Warinner, C. G.,Bos, K. I.,Krause, J., & Herbig, A. (2019). HOPS: Automated detection and authentication of pathogen DNA in archaeological remains. Genome Biology,20: 280.
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59 Barbieri, C.,Barquera, R., Arias, L., Sandoval, J. R., Acosta, O., Zurita, C., Aguilar-Campos, A., Tito-Álvarez, A. M., Serrano-Osuna, R., Gray, R. D., Mafessoni, F., Heggarty, P., Shimizu, K. K., Fujita, R., Stoneking, M., Pugach, I., & Fehren-Schmitz, L. (2019). The current genomic landscape of Western South America: Andes, Amazonia, and Pacific Coast. Molecular Biology and Evolution, msz174.
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58 Fan, S.-H., Ebner, P., Reichert, S., Hertlein, T., Zabel, S., Lankapalli, A. K., Nieselt, K., Ohlsen, K., & Götz, F. (2019). MpsAB is important for Staphylococcus aureus virulence and growth at atmospheric CO2 levels. Nature Communications,10(1): 3647.
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57 Fischer, M. S., Hoßfeld, U., Krause, J., & Richter, S. (2019). Jenaer Erklärung: das Konzept der Rasse ist das Ergebnis von Rassismus und nicht dessen Voraussetzung. Biologie in unserer Zeit,49(6), 399-402.
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56 Gretzinger, J., Molak, M., Reiter, E., Pfrengle, S., Urban, C., Neukamm, J., Blant, M., Conard, N. J., Cupillard, C., Dimitrijević, V., Drucker, D. G., Hofman-Kamińska, E., Kowalczyk, R., Krajcarz, M. T., Krajcarz, M., Münzel, S. C., Peresani, M., Romandini, M., Rufí, I., Soler, J., Terlato, G., Krause, J., Bocherens, H., & Schuenemann, V. J. (2019). Large-scale mitogenomic analysis of the phylogeography of the Late Pleistocene cave bear. Scientific Reports,9(1): 10700.
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55 Haak, W. (2019). [Book Review] Stephen Shennan. 2018. The first farmers of Europe: an evolutionary perspective. Cambridge: Cambridge University Press; 978-1-108-43521-5 £24.99. Antiquity,93(372), 1683-1684.
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54 Ongaro, L., Scliar, M. O., Flores, R., Raveane, A., Marnetto, D., Sarno, S., Gnecchi-Ruscone, G. A., Alarcón-Riquelme, M. E., Patin, E., Wangkumhang, P., Hellenthal, G., Gonzalez-Santos, M., King, R. J., Kouvatsi, A., Balanovsky, O., Balanovska, E., Atramentova, L., Turdikulova, S., Mastana, S., Marjanovic, D., Mulahasanovic, L., Leskovac, A., Lima-Costa, M. F., Pereira, A. C., Barreto, M. L., Horta, B. L., Mabunda, N., May, C. A., Moreno-Estrada, A., Achilli, A., Olivieri, A., Semino, O., Tambets, K., Kivisild, T., Luiselli, D., Torroni, A., Capelli, C., Tarazona-Santos, E., Metspalu, M., Pagani, L., & Montinaro, F. (2019). The Genomic impact of European colonization of the Americas. Current Biology,29(23), 3974-3986.e4.
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53 Velsko, I. M.,Fellows Yates, J. A.,Aron, F.,Hagan, R., Frantz, L. A. F., Loe, L., Martinez, J. B. R., Chaves, E., Gosden, C., Larson, G., & Warinner, C. G. (2019). Microbial differences between dental plaque and historic dental calculus are related to oral biofilm maturation stage. Microbiome,7(1): 102.
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52 Hagan, R., Hofman, C. A., Hübner, A., Reinhard, K., Schnorr, S., Lewis Jr, C. M., Sankaranarayanan, K., & Warinner, C. G. (2019). Comparison of extraction methods for recovering ancient microbial DNA from paleofeces. American Journal of Physical Anthropology,171(2), 275-284.
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51 Översti, S., Majander, K.,Salmela, E., Salo, K., Arppe, L., Belskiy, S., Etu-Sihvola, H., Laakso, V., Mikkola, E., Pfrengle, S., Putkonen, M., Taavitsainen, J.-P., Vuoristo, K., Wessman, A., Sajantila, A., Oinonen, M., Haak, W., Schuenemann, V. J., Krause, J., Palo, J. U., & Onkamo, P. (2019). Human mitochondrial DNA lineages in Iron-Age Fennoscandia suggest incipient admixture and eastern introduction of farming-related maternal ancestry. Scientific Reports,9(1): 16883.
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50 Mittnik, A., Massy, K., Knipper, C., Wittenborn, F., Pfrengle, S., Carlichi-Witjes, N., Deeg, H., Furtwängler, A., Harbeck, M., von Heyking, K., Kociumaka, C., Kucukkalipci, I., Lindauer, S., Metz, S., Staskiewicz, A., Thiel, A., Wahl, J., Haak, W., Pernicka, E., Schiffels, S.,Stockhammer, P. W., & Krause, J. (2019). Kinship-based social inequality in Bronze Age Europe. Science,366(6466): aax6219, pp. 731-734.
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49 Peltzer, A. (2018). Computational methods for ancient genome reconstruction. PhD Thesis, Eberhard Karls Universität, Tübingen.
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48 Richards, V. P., Velsko, I. M., Alam, T., Zadoks, R. N., Manning, S. D., Pavinski Bitar, P. D., Hasler, H. B., Crestani, C., Springer, G., Probert, B., Town, C. D., & Stanhope, M. J. (2019). Population gene introgression and high genome plasticity for the zoonotic pathogen Streptococcus agalactiae. Molecular Biology and Evolution,36(11): msz169, pp. 2572-2590.
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47 Swift, J. A., Bunce, M., Dortch, J., Douglass, K., Faith, J. T., Fellows Yates, J. A., Field, J., Haberle, S. G., Jacob, E., Johnson, C. N., Lindsey, E., Lorenzen, E. D., Louys, J., Miller, G., Mychajliw, A. M., Slon, V., Villavicencio, N. A., Waters, M. R., Welker, F., Wood, R., Petraglia, M. D., Boivin, N. L., & Roberts, P. (2019). Micro methods for megafauna: novel approaches to late quaternary extinctions and their contributions to faunal conservation in the anthropocene. Bioscience,69(11): biz105, pp. 877-887.
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46 Childebayeva, A., Harman, T., Weinstein, J., Goodrich, J. M., Dolinoy, D. C., Day, T. A., Bigham, A. W., & Brutsaert, T. D. (2019). DNA methylation changes are associated with an incremental ascent to high altitude. Frontiers in Genetics,10(OCT): 1062, pp. 1-10.
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45 Rageot, M., Mötsch, A., Schorer, B., Gutekunst, A., Patrizi, G., Zerrer, M., Cafisso, S., Fries-Knoblach, J., Hansen, L., Tarpini, R., Krausse, D., Hoppe, T., Stockhammer, P. W., & Spiteri, C. (2019). The dynamics of Early Celtic consumption practices: A case study of the pottery from the Heuneburg. PLoS One,14(10), 1-29.
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44 Spyrou, M. A.,Keller, M.,Tukhbatova, R. I., Scheib, C. L., Nelson, E. A.,Andrades Valtueña, A.,Neumann, G., Walker, D., Alterauge, A., Carty, N., Cessford, C., Fetz, H., Gourvennec, M., Hartle, R., Henderson, M., von Heyking, K., Inskip, S. A., Kacki, S., Key, F. M., Knox, E. L., Later, C., Maheshwari-Aplin, P., Peters, J., Robb, J. E., Schreiber, J., Kivisild, T., Castex, D., Lösch, S., Harbeck, M., Herbig, A.,Bos, K. I., & Krause, J. (2019). Phylogeography of the second plague pandemic revealed through analysis of historical Yersinia pestis genomes. Nature Communications,10(1): 4470.
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43 Hermann, A., Molle, G., Maury, R., Liotzou, C., & McAllistor, A. (2019). Geochemical sourcing of volcanic materials imported into Teti'aroa Atoll shows multiple long-distance interactions in the Windward Society Islands, French Polynesia. Archaeology in Oceania,54(3): arco.5187, pp. 184-199.
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42 Humphrey, L., Freyne, A., Loosdrecht, M. S. v. d., Hogue, J. T., Turner, E., Barton, N., & Bouzouggar, A. (2019). Infant funerary behavior and kinship in Pleistocene hunter-gatherers from Morocco. Journal of Human Evolution,135: 102637, pp. 1-13.
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41 Geber, J., Tromp, M., Scott, A., Bouwman, A., Nanni, P., Grossmann, J., Hendy, J., & Warinner, C. G. (2019). Relief food subsistence revealed by microparticle and proteomic analyses of dental calculus from victims of the Great Irish Famine. Proceedings of the National Academy of Sciences of the United States of America,116(39), 19380-19385.
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40 Borry, M. (2019). Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification. The Journal of Open Source Software, 01540.
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39 Bos, K. I., Kühnert, D., Herbig, A., Esquivel Gomez, L. R., Andrades Valtueña, A.,Barquera Lozano, R. J.,Giffin, K.,Lankapalli, A. K.,Nelson, E. A.,Sabin, S.,Spyrou, M. A., & Krause, J. (2019). Paleomicrobiology: Diagnosis and Evolution of Ancient Pathogens. Annual Review of Microbiology,73(1), 639-666.
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38 Bravo-Acevedo, A., Barquera Lozano, R. J., Bekker-Méndez, C., Clayton, S.,Hernández-Zaragoza, D. I., Benítez-Arvizu, G., Guerra-Márquez, Á., Juárez-Cortés, E. D., Arriaga-Perea, A. J., & Novelo-Garza, B. (2019). HLA concordance between hematopoietic stem cell transplantation patients and umbilical cord blood units: Implications for cord blood banking in admixed populations. Human Immunology,80(9), 714-722.
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37 Janssens, L. A., Gunz, P., Stenger, T. E., Fischer, M. S., Boone, M., & Stoessel, A. (2019). Bony labyrinth shape differs distinctively between modern wolves and dogs. Zoomorphology,138(3), 409-417.
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36 Nelson, E. A., Halling, C. L., & Buikstra, J. E. (2019). Evidence of Skeletal Fluorosis at the Ray Site, Illinois, USA: a pathological assessment and discussion of environmental factors. International Journey of Paleopathology,26, 48-60.
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35 Siebke, I., Steuri, N., Furtwängler, A., Ramstein, M., Arenz, G., Hafner, A., Krause, J., & Lösch, S. (2019). Who lived on the Swiss Plateau around 3300 BCE? Analyses of commingled human skeletal remains from the dolmen of Oberbipp. International Journal of Osteoarchaeology,29(5): oa.2791, pp. 786-796.
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34 Ning, C., Wang, C.-C., Gao, S., Yang, Y., Zhang, X., Wu, X., Zhang, F., Nie, Z., Tang, Y., Robbeets, M., Ma, J., Krause, J., & Cui, Y. (2019). Ancient Genomes Reveal Yamnaya-Related Ancestry and a Potential Source of Indo-European Speakers in Iron Age Tianshan. Current Biology,29(15), 2526-2532.e4.
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33 Martini, S. J., Athanassov, B., Frangipane, M., Rassmann, K., Stockhammer, P. W., & Dreibrodt, S. (2019). A budgeting approach for estimating matter fluxes in archaeosediments, a new method to infer site formation and settlement activity: Examples from a transect of multi-layered Bronze Age settlement mounds. Journal of Archaeological Science: Reports,26: 101916, pp. 1-13.
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32 Kaspar, J. R., Godwin, M. J., Velsko, I. M., Richards, V. P., & Burne, R. A. (2019). Spontaneously arising streptococcus mutans variants with reduced susceptibility to chlorhexidine display genetic defects and diminished fitness. Antimicrobial Agents and Chemotherapy,63(7): e00161-19.
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31 Sabin, S. (2019). Insights into microbial evolution and ecology from genetic analysis of diverse archaeological materials. PhD Thesis, Friedrich-Schiller-Universität Jena, Fakultät für Biowissenschaften, Jena.
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30 Rageot, M., Mötsch, A., Schorer, B., Bardel, D., Winkler, A., Sacchetti, F., Chaume, B., Della Casa, P., Buckley, S., Cafisso, S., Fries-Knoblach, J., Krausse, D., Hoppe, T., Stockhammer, P. W., & Spiteri, C. (2019). New insights into Early Celtic consumption practices: Organic residue analyses of local and imported pottery from Vix-Mont Lassois. PLoS One,14(6): e0218001.
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29 Keller, M.,Spyrou, M. A., Scheib, C. L., Neumann, G.,Kröpelin, A., Haas-Gebhard, B., Päffgen, B., Haberstroh, J., Lacomba, A. R., Raynaud, C., Cessford, C., Durand, R., Stadler, P., Nägele, K., Bates, J. S., Trautmann, B., Inskip, S. A., Peters, J., Robb, J. E., Kivisild, T., Castex, D., McCormick, M., Bos, K. I., Harbeck, M., Herbig, A., & Krause, J. (2019). Ancient Yersinia pestis genomes from across Western Europe reveal early diversification during the First Pandemic (541–750). Proceedings of the National Academy of Sciences of the United States of America,116(25), 12363-12372.
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28 Flegontov, P., Altınışık, N. E., Changmai, P., Rohland, N., Mallick, S., Adamski, N., Bolnick, D. A., Broomandkhoshbacht, N., Candilio, F., Culleton, B. J., Flegontova, O., Friesen, T. M., Jeong, C., Harper, T. K., Keating, D., Kennett, D. J., Kim, A. M., Lamnidis, T. C., Lawson, A. M., Olalde, I., Oppenheimer, J., Potter, B. A., Raff, J., Sattler, R. A., Skoglund, P., Stewardson, K., Vajda, E. J., Vasilyev, S., Veselovskaya, E., O’Rourke, M. G. H. D. H., Krause, J., Pinhasi, R., & Schiffels, S. (2019). Palaeo-Eskimo genetic ancestry and the peopling of Chukotka and North America. Nature,570, 236-240.
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27 Barlow, R. (2019). A syntactic motivation for valency reduction: Antipassive constructions in Ulwa. Oceanic Linguistics,58(1): 730686, pp. 1-30.
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26 Gnecchi Ruscone, G. A., Sarno, S., Fanti De, S., Gianvincenzo, L., Giuliani, C., Boattini, A., Bortolini, E., Corcia Di, T., Mellado, C. S., Jesus, T., Francia, D., Gentilini, D., Blasio Di, A. M., Cosimo Di, P., Cilli, E., Gonzalez-Martin, A., Franceschi, C., Franceschi, Z. A., Rickards, O., Sazzini, M., Luiselli, D., & Pettener, D. (2019). Dissecting the Pre-Columbian genomic ancestry of Native Americans along the Andes-Amazonia divide. Molecular Biology and Evolution,36(6): msz066, pp. 1254-1269.
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25 Jeong, C., Balanovsky, O., Lukianova, E., Kahbatkyzy, N., Flegontov, P., Zaporozhchenko, V., Immel, A., Wang, C.-C., Ixan, O., Khussainova, E., Bekmanov, B., Zaibert, V., Lavryashina, M., Pocheshkhova, E., Yusupov, Y., Agdzhoyan, A., Koshel, S., Bukin, A., Nymadawa, P., Turdikulova, S., Dalimova, D., Churnosov, M., Skhalyakho, R., Daragan, D., Bogunov, Y., Bogunova, A., Shtrunov, A., Dubova, N., Zhabagin, M., Yepiskoposyan, L., Churakov, V., Pislegin, N., Damba, L., Saroyants, L., Dibirova, K., Atramentova, L., Utevska, O., Idrisov, E., Kamenshchikova, E., Evseeva, I., Metspalu, M., Outram, A. K., Robbeets, M., Djansugurova, L., Balanovska, E., Schiffels, S.,Haak, W., Reich, D., & Krause, J. (2019). The genetic history of admixture across inner Eurasia. Nature Ecology & Evolution,3, 966-976.
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24 Linares, V., Adams, M. J., Cradic, M. S., Finkelstein, I., Lipschits, O., Martin, M. A., Neumann, R., Stockhammer, P. W., & Gadot, Y. (2019). First evidence for vanillin in the old world: its use as mortuary offering in Middle Bronze Canaan. Journal of Archaeological Science: Reports,25, 77-84.
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23 Peyrégne, S., Slon, V., Mafessoni, F., de Filippo, C., Hajdinjak, M., Nagel, S., Nickel, B., Essel, E., Le Cabec, A., Wehrberger, K., Conard, N. J., Kind, C. J., Posth, C.,Krause, J., Abrams, G., Bonjean, D., Di Modica, K., Toussaint, M., Kelso, J., Meyer, M., Pääbo, S., & Prüfer, K. (2019). Nuclear DNA from two early Neandertals reveals 80,000 years of genetic continuity in Europe. Science Advances,5(6): eaaw5873.
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22 Kumar, S., Bansal, K., Patil, P. P., & Patil, P. B. (2019). Phylogenomics insights into order and families of Lysobacterales. Access Microbiology,1(2).
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21 Villalba-Mouco, V.,Loosdrecht, M. S. v. d.,Posth, C., Mora, R., Martínez-Moreno, J., Rojo-Guerra, M., Salazar-García, D. C., Royo-Guillén, J. I., Kunst, M., Rougier, H., Crevecoeur, I., Arcusa-Magallón, H., Tejedor-Rodríguez, C., de Lagrán, I.-G.-M., Garrido-Pena, R., Alt, K. W., Jeong, C.,Schiffels, S., Utrilla, P., Krause, J., & Haak, W. (2019). Survival of late pleistocene hunter-gatherer ancestry in the Iberian Peninsula. Current Biology,29(7), 1169-1177.
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20 Sabin, S.,Herbig, A.,Vagene, A. J., Ahlström, T., Bozovic, G., Arcini, C., Kuehnert, D., & Bos, K. I. (2019). A seventeenth-century Mycobacterium tuberculosis genome supports a Neolithic emergence of the Mycobacterium tuberculosis complex. Genome Biology: Biology for the Post-Genomic Era,21: 201 (2020).
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19 Marcus, J. H., Posth, C., Ringbauer, H., Lai, L., Skeates, R., Sidore, C., Beckett, J., Furtwängler, A., Olivieri, A., Chiang, C., Al-Asadi, H., Dey, K., Joseph, T. A., Der Sarkissian, C., Radzeviciute, R., Gradoli, M. G., Haak, W., Reich, D., Schlessinger, D., Cucca, F., Krause, J., & Novembre, J. (2019). Population history from the Neolithic to present on the Mediterranean island of Sardinia: An ancient DNA perspective. bioRxiv, 583104, 1-26.
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18 Di Maida, G., Mannino, M. A., Krause-Kyora, B., Jensen, T. Z. T., & Talamo, S. (2019). Radiocarbon dating and isotope analysis on the purported Aurignacian skeletal remains from Fontana Nuova (Ragusa, Italy). PLoS One,14(3): e0213173.
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17 Feldman, M., Fernández-Domínguez, E., Reynolds, L., Baird, D., Pearson, J., Hershkovitz, I., May, H., Goring-Morris, N., Benz, M., Gresky, J., Bianco, R. A., Fairbairn, A., Mustafaoğlu, G., Stockhammer, P. W.,Posth, C.,Haak, W.,Jeong, C., & Krause, J. (2019). Late Pleistocene human genome suggests a local origin for the first farmers of central Anatolia. Nature Communications,10: 1218.
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16 Olalde, I., Mallick, S., Patterson, N., Rohland, N., Villalba-Mouco, V., Silva, M., Dulias, K., Edwards, C. J., Gandini, F., Pala, M., Soares, P., Ferrando-Bernal, M., Adamski, N., Broomandkhoshbacht, N., Cheronet, O., Culleton, B. J., Fernandes, D., Lawson, A. M., Mah, M., Oppenheimer, J., Stewardson, K., Zhang, Z., Arenas, J. M. J., Moyano, I. J. T., Salazar-García, D. C., Castanyer, P., Santos, M., Tremoleda, J., Lozano, M., Borja, P. G., Fernández-Eraso, J., Mujika-Alustiza, J. A., Barroso, C., Bermúdez, F. J., Mínguez, E. V., Burch, J., Coromina, N., Vivó, D., Cebrià, A., Fullola, J. M., García-Puchol, O., Morales, J. I., Oms, F. X., Majó, T., Vergès, J. M., Díaz-Carvajal, A., Ollich-Castanyer, I., López-Cachero, F. J., Silva, A. M., Alonso-Fernández, C., de Castro, G. D., Echevarría, J. J., Moreno-Márquez, A., Berlanga, G. P., Ramos-García, P., Ramos-Muñoz, J., Vila, E. V., Arzo, G. A., Arroyo, Á. E., Lillios, K. T., Mack, J., Velasco-Vázquez, J., Waterman, A., de Enrich, L. B. L., Sánchez, M. B., Agustí, B., Codina, F., de Prado, G., Estalrrich, A., Flores, Á. F., Finlayson, C., Finlayson, G., Finlayson, S., Giles-Guzmán, F., Rosas, A., González, V. B., Atiénzar, G. G., Pérez, M. S. H., Llanos, A., Marco, Y. C., Beneyto, I. C., López-Serrano, D., Tormo, M. S., Valera, A. C., Blasco, C., Liesau, C., Ríos, P., Daura, J., de Michó, M. J. P., Diez-Castillo, A. A., Fernández, R. F., Farré, J. F., Garrido-Pena, R., Gonçalves, V. S., Guerra-Doce, E., Herrero-Corral, A. M., Juan-Cabanilles, J., López-Reyes, D., McClure, S. B., Pérez, M. M., Foix, A. O., Borràs, M. S., Sousa, A. C., Encinas, J. M. V., Kennett, D. J., Richards, M. B., Alt, K. W., Haak, W., Pinhasi, R., Lalueza-Fox, C., & Reich, D. (2019). The genomic history of the Iberian Peninsula over the past 8000 years. Science,363 (6432), 1230-1234.
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15 Wißing, C., Rougier, H., Baumann, C., Comeyne, A., Crevecoeur, I., Drucker, D. G., Gaudzinski-Windheuser, S., Germonpré, M., Gómez-Olivencia, A., Krause, J., Matthies, T., Naito, Y. I., Posth, C., Semal, P., Street, M., & Bocherens, H. (2019). Stable isotopes reveal patterns of diet and mobility in the last Neandertals and first modern humans in Europe. Scientific Reports,9: 4433.
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14 Joo, Y., Schuman, M. C., Goldberg, J. K., Wissgott, A., Kim, S.-G., & Baldwin, I. T. (2019). Herbivory elicits changes in green leaf volatile production via jasmonate signaling and the circadian clock. Plant, Cell and Environment,42(3), 972-982.
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13 Stockhammer, P. W. (2019). Appropriation of effective and changing things. In L. Abu-Er-Rub, C. Brosius, S. Meurer, D. Panagiotopoulos, & S. Richter (Eds.), Engaging transculturality: concepts, key terms, case studies (pp. 264-276). Abington: Routledge.
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12 Krause, J., & Trappe, T. (2019).Die Reise unserer Gene: Eine Geschichte über uns und unsere Vorfahren. Berlin: Propyläen Verlag.
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11 Wang, C.-C., Reinhold, S., Kalmykov, A., Wissgott, A.,Brandt, G.,Jeong, C., Cheronet, O., Ferry, M., Harney, E., Keating, D., Mallick, S., Rohland, N., Stewardson, K., Kantorovich, A. R., Maslov, V. E., Petrenko, V. G., Erlikh, V. R., Atabiev, B. C., Magomedov, R. G., Kohl, P. L., Alt, K. W., Pichler, S. L., Gerling, C., Meller, H., Vardanyan, B., Yeganyan, L., Rezepkin, A. D., Mariaschk, D., Berezina, N., Gresky, J., Fuchs, K., Knipper, C., Schiffels, S., Balanovska, E., Balanovsky, O., Mathieson, I., Higham, T., Berezin, Y. B., Buzhilova, A., Trifonov, V., Pinhasi, R., Belinskij, A. B., Reich, D., Hansen, S., Krause, J., & Haak, W. (2019). Ancient human genome-wide data from a 3000-year interval in the Caucasus corresponds with eco-geographic regions. Nature Communications,10(1): 590.
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10 Meiri, M., Stockhammer, P. W., Morgenstern, P., & Maran, J. (2019). Mobility and trade in Mediterranean antiquity: Evidence for an 'Italian connection' in Mycenaean Greece revealed by ancient DNA of livestock. Journal of Archaeological Science: Reports,23, 98-103.
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9 Adhikari, K., Mendoza-Revilla, J., Sohail, A., Fuentes-Guajardo, M., Lampert, J., Chacón-Duque, J. C., Hurtado, M., Villegas, V., Granja, V., Acuña-Alonzo, V., Jaramillo, C., Arias, W., Barquera Lozano, R. J., Everardo, P., Gómez-Valdés, J., Villamil-Ramírez, H., Silva de Cerqueira, C. C., Hunemeier, T., Ramallo, V., Schuler-Faccini, L., Salzano, F. M., Gonzalez-José, R., Bortolini, M.-C., Canizales-Quinteros, S., Gallo, C., Poletti, G., Bedoya, G., Rothhammer, F., Tobin, D. J., Fumagalli, M., Balding, D., & Ruiz-Linares, A. (2019). A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia. Nature Communications,10: 358.
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8 Radini, A., Tromp, M., Beach, A. I., Tong, E., Speller, C., McCormick, M., Dudgeon, J. V., Collins, M. J., Rühli, F., Kröger, R., & Warinner, C. G. (2019). Medieval women’s early involvement in manuscript production suggested by lapis lazuli identification in dental calculus. Science Advances,5(1): eaau7126.
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7 Feldman, M., Master, D. M., Bianco, R. A., Burri Promerová, M.,Stockhammer, P. W.,Mittnik, A., Aja, A. J., Jeong, C., & Krause, J. (2019). Ancient DNA sheds light on the genetic origins of early Iron Age Philistines. Science Advances,5(7): eaax0061, pp. 1-10.
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6 Grawunder, S., Crockford, C., Kalan, A. K., Clay, Z., Stoessel, A., & Hohmann, G. (2019). Response to Garcia and Dunn: No evidence that maximum fundamental frequency reflects selection for signal diminution in bonobos Response. Current Biology,29(15), R734-R735.
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5 Gurdasani, D., Carstensen, T., Fatumo, S., Chen, G., Franklin, C. S., Prado-Martinez, J., Bouman, H., Abascal, F., Haber, M., Tachmazidou, I., Mathieson, I., Ekoru, K., DeGorter, M. K., Nsubuga, R. N., Finan, C., Wheeler, E., Chen, L., Cooper, D. N., Schiffels, S., Chen, Y., Ritchie, G. R., Pollard, M. O., Fortune, M. D., Mentzer, A. J., Garrison, E., Bergstrom, A., Hatzikotoulas, K., Adeyemo, A., Doumatey, A., Elding, H., Wain, L. V., Ehret, G., Auer, P. L., Kooperberg, C. L., Reiner, A. P., Franceschini, N., Maher, D. P., Montgomery, S. B., Kadie, C., Widmer, C., Xue, Y., Seeley, J., Asiki, G., Kamali, A., Young, E. H., Pomilla, C., Soranzo, N., Zeggini, E., Pirie, F., Morris, A. P., Heckerman, D., Tyler-Smith, C., Motala, A., Rotimi, C., Kaleebu, P., Barroso, I., & Sandhu, M. S. (2019). Uganda genome resource enables insights into population history and genomic discovery in Africa. Cell,179(4), 984-1002.e36.
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4 Mötsch, A., Rageot, M., Schorer, B., Ballmer, A., Balzer, I., Bardel, D., Cafisso, S., Chaume, B., Casa, P. D., Fougère, F., Fries-Knoblach, J., Nieszery, N., Reinhard, W., Sacchetti, F., Schreiber, S., Winkler, A., Zerrer, M., Hoppe, T., Krausse, D., Spiteri, C. D., & Stockhammer, P. W. (2019). Essen und Trinken am Mont Lassois in Burgund: neue Erkenntnisse zu Bedeutungen und Funktionen lokaler und importierter Keramik in der frühen Eisenzeit. In P. W. Stockhammer, & J. Fries-Knoblauch (Eds.), In die Töpfe geschaut: biochemische und kulturgeschichtliche Studien zum früheisenzeitlichen Essen und Trinken (pp. 51-112). Leiden: Sidestone Press.
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3 Posth, C.,Nägele, K., Colleran, H., Valentin, F., Bedford, S., Gray, R. D., Krause, J., & Powell, A. (2019). Response to “Ancient DNA and its contribution to understanding the human history of the Pacific Islands” (Bedford et al. 2018). Archaeology in Oceania,54, 57-61.
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2 Rest, M., & Rippa, A. (2019). Road animism: Reflections on the life of infrastructures. HAU: Journal of Ethnographic Theory,9(2), 373-389.
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1 Spyrou, M. A.,Bos, K. I.,Herbig, A., & Krause, J. (2019). Ancient pathogen genomics as an emerging tool for infectious disease research. Nature Reviews Genetics,20, 323-340.
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2018

52 Ziesemer, K. A., Ramos-Madrigal, J., Mann, A. E., Brandt, B. W., Sankaranarayanan, K., Ozga, A. T., Hoogland, M., Hofman, C. A., Salazar-García, D. C., Frohlich, B., Milner, G. R., Stone, A. C., Aldenderfer, M., Lewis Jr, C. M., Hofman, C. L., Warinner, C. G., & Schroeder, H. (2018). The efficacy of whole human genome capture on ancient dental calculus and dentin. American Journal of Physical Anthropology,168(3), 496-509.
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51 Chacon-Duque, J. C., Adhikari, K., Fuentes-Guajardo, M., Mendoza-Revilla, J., Acuna-Alonzo, V., Barquera Lozano, R., Quinto-Sanchez, M., Gomez-Valdes, J., Everardo Martinez, P., Villamil-Ramirez, H., Hunemeier, T., Ramallo, V., Silva de Cerqueira, C. C., Hurtado, M., Villegas, V., Granja, V., Villena, M., Vasquez, R., Llop, E., Sandoval, J. R., Salazar-Granara, A. A., Parolin, M.-L., Sandoval, K., Penaloza-Espinosa, R. I., Rangel-Villalobos, H., Winkler, C., Klitz, W., Bravi, C., Molina, J., Corach, D., Barrantes, R., Gomes, V., Resende, C., Gusmao, L., Amorim, A., Xue, Y., Dugoujon, J.-M., Moral, P., Gonzalez-Jose, R., Schuler-Faccini, L., Salzano, F. M., Bortolini, M.-C., Canizales-Quinteros, S., Poletti, G., Gallo, C., Bedoya, G., Rothhammer, F., Balding, D., Hellenthal, G., & Ruiz-Linares, A. (2018). Latin Americans show wide-spread Converso ancestry and imprint of local Native ancestry on physical appearance. Nature Communications,9: 5388.
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50 Vågene, Å. J. (2018). Genomic insights into pre- and post-contact human pathogens in the New World. PhD Thesis, Eberhard-Karls Universität, Tübingen.
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49 Stockhammer, P. W.,Mittnik, A., Massy, K., & Knipper, C. (2018). Die wissenden Frauen vom Lechtal. Spektrum der Wissenschaft: Spezial Archäologie, Geschichte, Kultur, (4), 38-41.
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48 Lamnidis, T. C.,Majander, K.,Jeong, C.,Salmela, E., Wessman, A., Moiseyev, V., Khartanovich, V., Balanovsky, O., Ongyerth, M., Weihmann, A., Sajantila, A., Kelso, J., Pääbo, S., Onkamo, P., Haak, W.,Krause, J., & Schiffels, S. (2018). Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe. Nature Communications,9: 5018.
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47 Bos, K. I. (2018). TB’s Chinese travels. Nature Ecology & Evolution,2(12), 1842-1843.
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46 Posth, C., Nakatsuka, N., Lazaridis, I., Skoglund, P., Mallick, S., Lamnidis, T. C., Rohland, N., Nägele, K., Adamski, N., Bertolini, E., Broomandkhoshbacht, N., Cooper, A., Culleton, B. J., Ferraz, T., Ferry, M., Furtwängler, A.,Haak, W., Harkins, K., Harper, T. K., Hünemeier, T., Lawson, A. M., Llamas, B., Michel, M., Nelson, E. A., Oppenheimer, J., Patterson, N., Schiffels, S., Sedig, J., Stewardson, K., Talamo, S., Wang, C.-C., Hublin, J.-J., Hubbe, M., Harvati, K., Delaunay, A. N., Beier, J., Francken, M., Kaulicke, P., Reyes-Centeno, H., Rademaker, K., Trask, W. R., Robinson, M., Gutierrez, S. M., Prufer, K. M., Salazar-García, D. C., Chim, E. N., Gomes, L. M. P., Alves, M. L., Liryo, A., Inglez, M., Oliveira, R. E., Bernardo, D. V., Barioni, A., Wesolowski, V., Scheifler, N. A., Rivera, M. A., Plens, C. R., Messineo, P. G., Figuti, L., Corach, D., Scabuzzo, C., Eggers, S., DeBlasis, P., Reindel, M., Mendez, C., Politis, G., Tomasto-Cagigao, E., Kennett, D. J., Strauss, A., Fehren-Schmitz, L., Krause, J., & Reich, D. (2018). Reconstructing the deep population history of Central and South America. Cell,175(5), 1185-1197.
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45 Bansal, K., Kumar, S., & Patil, P. B. (2018). Complete genome sequence reveals evolutionary dynamics of an emerging and variant pathovar of Xanthomonas euvesicatoria. Genome Biology and Evolution, evy238.
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44 Grawunder, S., Crockford, C., Clay, Z., Kalan, A. K., Stevens, J. M., Stoessel, A., & Hohmann, G. (2018). Higher fundamental frequency in bonobos is explained by larynx morphology. Current Biology,28(20), R1188-R1189.
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43 Furtwängler, A., Reiter, E., Neumann, G. U., Siebke, I., Steuri, N., Hafner, A., Lösch, S., Anthes, N., Schuenemann, V. J., & Krause, J. (2018). Ratio of mitochondrial to nuclear DNA affects contamination estimates in ancient DNA analysis. Scientific Reports,8: 14075.
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42 Amorim, C. E. G., Vai, S., Posth, C., Modi, A., Koncz, I., Hakenbeck, S., La Rocca, M. C., Cristina, M., Mende, B., Bobo, D., Pohl, W., Baricco, L. P., Bedini, E., Francalacci, P., Giostra, C., Vida, T., Winger, D., von Freeden, U., Ghirotto, S., Lari, M., Barbujani, G., Krause, J., Caramelli, D., Geary, P. J., & Veeramah, K. R. (2018). Understanding 6th-century barbarian social organization and migration through paleogenomics. Nature Communications,9: 3547.
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41 Spyrou, M. A. (2018). The evolutionary history of plague as revealed through the analysis of ancient Yersinia pestis genomes. PhD Thesis.
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40 O’Sullivan, N.,Posth, C., Coia, V., Schuenemann, V. J., Price, T. D., Wahl, J., Pinhasi, R., Zink, A., Krause, J., & Maixner, F. (2018). Ancient genome-wide analyses infer kinship structure in an Early Medieval Alemannic graveyard. Science Advances,4(9): 1262.
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39 Galarza, J. M., Barquera, R., Álvarez, A. M. T., Hernández Zaragoza, D. I., Sevilla, G. P., Tamayo, A., Pérez, M., Dávila, D., Birnberg, L., Alonzo, V. A., Krause, J., & Grijalva, M. (2018). Genetic diversity of the HLA system in human populations from the Sierra (Andean), Oriente (Amazonian) and Costa (Coastal) regions of Ecuador. Human Immunology,79(9), 639-650.
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38 Haak, W., & Schiffels, S. (2018). Möglichkeiten und Grenzen molekulargenetischer Untersuchungen in den Geschichtswissenschaften. NTM: Zeitschrift für Geschichte der Wissenschaften, Technik und Medizin,26(3), 310-324.
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37 Eisenmann, S., Bánffy, E., van Dommelen, P., Hofmann, K. P., Maran, J., Lazaridis, I., Mittnik, A., McCormick, M., Krause, J., Reich, D., & Stockhammer, P. W. (2018). Reconciling material cultures in archaeology with genetic data: The nomenclature of clusters emerging from archaeogenomic analysis. Scientific Reports,8: 13003.
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36 Furuzawa-Carballeda, J., Zuñiga, J., Hernández-Zaragoza, D. I.,Barquera, R., Marques-García, E., Jiménez-Alvarez, L., Cruz-Lagunas, A., Ramírez, G., Regino, N. E., Espinosa-Soto, R., Yunis, E. J., Romero-Hernández, F., Azamar-Llamas, D., Coss-Adame, E., Valdovinos, M. A., Torres-Landa, S., Palacios-Ramírez, A., Breña, B., Alejandro-Medrano, E., Hernández-Ávila, A., Granados, J., & Torres-Villalobos, G. (2018). An original Eurasian haplotype, HLA-DRB1*14:54-DQB1*05:03, influences the susceptibility to idiopathic achalasia. PLoS One,13(8): e0201676.
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35 Potter, B. A., Baichtal, J. F., Beaudoin, A. B., Fehren-Schmitz, L., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R. L., Llamas, B., Malhi, R. S., Miller, D. S., Reich, D., Reuther, J. D., Schiffels, S., & Surovell, T. A. (2018). Current evidence allows multiple models for the peopling of the Americas. Science Advances,4(8): eaat5473.
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34 Lindo, J., Haas, R., Hofman, C., Apata, M., Moraga, M., Verdugo, R., Watson, J. T., Llave, C., Witonsky, D., Pacheco, E., Villena, M., Soria, R., Beall, C., Warinner, C. G., Novembre, J., Aldenderfer, M., & Di Rienzo, A. (2018). The genetic prehistory of the Andean highlands 7,000 Years BP though European contact. bioRxiv, 381905.
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33 Hendy, J., Warinner, C. G., Bouwman, A., Collins, M. J., Fiddyment, S., Fischer, R., Hagan, R., Hofman, C. A., Holst, M., Chaves, E., Klaus, L., Larson, G., Mackie, M., McGrath, K., Mundorff, A. Z., Radini, A., Rao, H., Trachsel, C., Velsko, I. M., & Speller, C. F. (2018). Proteomic evidence of dietary sources in ancient dental calculus. Proceedings of the Royal Society B: Biological Sciences,285(1883): 20180977.
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32 Velsko, I. M., Frantz, L. A. F., Herbig, A., Larson, G., & Warinner, C. (2018). Selection of appropriate metagenome taxonomic classifiers for ancient microbiome research. mSystems,3(4): e00080-18.
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31 Mann, A.,Sabin, S., Ziesemer, K., Vågene, Å. J., Schroeder, H., Ozga, A. T., Sankaranarayanan, K., Hofman, C. A., Fellows Yates, J. A.,Salazar-García, D. C., Frohlich, B., Aldenderfer, M., Hoogland, M., Read, C., Milner, G. R., Stone, A. C., Lewis, C. M., Krause, J., Hofman, C., Bos, K. I., & Warinner, C. G. (2018). Differential preservation of endogenous human and microbial DNA in dental calculus and dentin. Scientific Reports,8(1): 9822.
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30 Schuenemann, V. J., Lankapalli, A. K.,Barquera, R.,Nelson, E. A.,Iraíz Hernández, D., Acuña Alonzo, V., Bos, K. I., Márquez Morfín, L., Herbig, A., & Krause, J. (2018). Historic Treponema pallidum genomes from Colonial Mexico retrieved from archaeological remains. PLOS Neglected Tropical Diseases,12(6): e0006447.
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29 Spyrou, M. A.,Tukhbatova, R. I., Wang, C.-C., Andrades Valtueña, A.,Lankapalli, A. K., Kondrashin, V. V., Tsybin, V. A., Khokhlov, A., Kühnert, D., Herbig, A.,Bos, K. I., & Krause, J. (2018). Analysis of 3800-year-old Yersinia pestis genomes suggests Bronze Age origin for bubonic plague. Nature Communications,9: 2234.
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28 Kysela, J., Augustinová, A., & Kinaston, R. (2018). Preliminary reports on the excavations at Burgut Kurgan and Bobolangar in 2017. Studia Hercynia,22(1), 158-182. Retrieved from https://dspace.cuni.cz/handle/20.500.11956/104480.
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27 Stockhammer, P. W., & Athanassov, B. (2018). Conceptualizing contact zones and contact spaces: an archaeological perspective. In S. Gimatzidis, M. Pienia̢żek, & S. Mangaloğlu-Votruba (Eds.), Archaeology across frontiers and borderlands: Fragmentation and connectivity in the North Aegean and the Central Balkans from the Bronze Age to the Iron Age (pp. 93-112). Wien: Verlag der Österreichischen Akademie der Wissenschaften.
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26 Jeong, C., Balanovsky, O., Lukianova, E., Kahbatkyzy, N., Flegontov, P., Zaporozhchenko, V., Immel, A., Wang, C.-C., Ixan, O., Khussainova, E., Bekmanov, B., Zaibert, V., Lavryashina, M., Pocheshkhova, E., Yusupov, Y., Agdzhoyan, A., Sergey, K., Bukin, A., Nymadawa, P., Churnosov, M., Skhalyakho, R., Daragan, D., Bogunov, Y., Bogunova, A., Shtrunov, A., Dubova, N., Zhabagin, M., Yepiskoposyan, L., Churakov, V., Pislegin, N., Damba, L., Saroyants, L., Dibirova, K., Artamentova, L., Utevska, O., Idrisov, E., Kamenshchikova, E., Evseeva, I., Metspalu, M., Robbeets, M., Djansugurova, L., Balanovska, E., Schiffels, S.,Haak, W., Reich, D., & Krause, J. (2018). Characterizing the genetic history of admixture across inner Eurasia. bioRxiv, 327122.
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25 Krause-Kyora, B., Susat, J., Key, F. M., Kühnert, D., Bosse, E., Immel, A., Rinne, C., Kornell, S.-C., Yepes, D., Franzenburg, S., Heyne, H. O., Meier, T., Lösch, S., Meller, H., Friederich, S., Nicklisch, N., Alt, K. W., Schreiber, S., Tholey, A., Herbig, A., Nebel, A., & Krause, J. (2018). Neolithic and medieval virus genomes reveal complex evolution of Hepatitis B. eLife,7: e36666.
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24 Loosdrecht, M. v. d., Bouzouggar, A., Humphrey, L., Posth, C., Barton, N., Ayinuer-Petri, A., Nickel, B., Nagel, S., Talbi, E. H., Hajraoui, M. A. E., Amzazi, S., Hublin, J.-J., Pääbo, S., Schiffels, S., Meyer, M., Haak, W.,Jeong, C., & Krause, J. (2018). Pleistocene North African genomes link Near Eastern and sub-Saharan African human populations. Science,360(6388), 548-552.
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23 Key, F. M., Abdul-Aziz, M. A., Mundry, R., Peter, B. M., Sekar, A., D'Amato, M., Dennis, M. Y., Schmidt, J. M., & Andrés, A. M. (2018). Human local adaptation of the TRPM8 cold receptor along a latitudinal cline. PLoS Genetics,14(5): e1007298.
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22 Kandler, A., & Powell, A. (2018). Generative inference for cultural evolution. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences,373(1743): 20170056.
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21 Martínez Tuñón, A., Robles García, N. M., Clark, D. J., Warinner, C. G., & Tuross, N. (2018). Clandestine pulque production during the sixteenth-century in the Tlacolula Valley, Oaxaca, Mexico. Mexicon,40(2), 52-59.
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20 Hajdinjak, M., Fu, Q., Hübner, A., Petr, M., Mafessoni, F., Grote, S., Skoglund, P., Narasimham, V., Rougier, H., Crevecoeur, I., Semal, P., Soressi, M., Talamo, S., Hublin, J.-J., Gušic, I., Kucan, Ž., Rudan, P., Golovanova, L. V., Doronichev, V. B., Posth, C.,Krause, J., Korlevic, P., Nagel, S., Nickel, B., Slatkin, M., Patterson, N., Reich, D., Prüfer, K., Meyer, M., Pääbo, S., & Kelso, J. (2018). Reconstructing the genetic history of late Neanderthals. Nature,555(7698), 652-656.
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19 Münster, A., Knipper, C., Oelze, V. M., Nicklisch, N., Stecher, M., Schlenker, B., Ganslmeier, R., Fragata, M., Friederich, S., Dresely, V., Hubensack, V., Brandt, G., Döhle, H.-J., Vach, W., Schwarz, R., Metzner-Nebelsick, C., Meller, H., & Alt, K. W. (2018). 4000 years of human dietary evolution in central Germany, from the first farmers to the first elites. PLoS One,13(3): 0194862.
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18 Hendy, J., Welker, F., Demarchi, B., Speller, C., Warinner, C., & Collins, M. J. (2018). A guide to ancient protein studies. Nature Ecology & Evolution,2, 791-799.
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17 Olalde, I., Brace, S., Allentoft, M. E., Armit, I., Kristiansen, K., Booth, T., Rohland, N., Mallick, S., Szécsényi-Nagy, A., Mittnik, A., Altena, E., Lipson, M., Lazaridis, I., Harper, T. K., Patterson, N., Broomandkhoshbacht, N., Diekmann, Y., Faltyskova, Z., Fernandes, D., Ferry, M., Harney, E., de Knijff, P., Michel, M., Oppenheimer, J., Stewardson, K., Barclay, A., Alt, K. W., Liesau, C., Ríos, P., Blasco, C., Miguel, J. V., García, R. M., Fernández, A. A., Bánffy, E., Bernabò-Brea, M., Billoin, D., Bonsall, C., Bonsall, L., Allen, T., Büster, L., Carver, S., Navarro, L. C., Craig, O. E., Cook, G. T., Cunliffe, B., Denaire, A., Dinwiddy, K. E., Dodwell, N., Ernée, M., Evans, C., Kuchařík, M., Farré, J. F., Fowler, C., Gazenbeek, M., Pena, R. G., Haber-Uriarte, M., Haduch, E., Hey, G., Jowett, N., Knowles, T., Massy, K., Pfrengle, S., Lefranc, P., Lemercier, O., Lefebvre, A., Martínez, C. H., Olmo, V. G., Ramírez, A. B., Maurandi, J. L., Majó, T., McKinley, J. I., McSweeney, K., Mende, B. G., Mod, A., Kulcsár, G., Kiss, V., Czene, A., Patay, R., Endrődi, A., Köhler, K., Hajdu, T., Szeniczey, T., Dani, J., Bernert, Z., Hoole, M., Cheronet, O., Keating, D., Velemínský, P., Dobeš, M., Candilio, F., Brown, F., Fernández, R. F., Herrero-Corral, A.-M., Tusa, S., Carnieri, E., Lentini, L., Valenti, A., Zanini, A., Waddington, C., Delibes, G., Guerra-Doce, E., Neil, B., Brittain, M., Luke, M., Mortimer, R., Desideri, J., Besse, M., Brücken, G., Furmanek, M., Hałuszko, A., Mackiewicz, M., Rapiński, A., Leach, S., Soriano, I., Lillios, K. T., Cardoso, J. L., Pearson, M. P., Włodarczak, P., Price, T. D., Prieto, P., Rey, P.-J., Risch, R., Guerra, R., A., M., Schmitt, A., Serralongue, J., Silva, A. M., Smrčka, V., Vergnaud, L., Zilhão, J., Caramelli, D., Higham, T., Thomas, M. G., Kennett, D. J., Fokkens, H., Heyd, V., Sheridan, A., Sjögren, K.-G., Stockhammer, P. W.,Krause, J., Pinhasi, R., Haak, W., Barnes, I., Lalueza-Fox, C., & Reich, D. (2018). The Beaker phenomenon and the genomic transformation of northwest Europe. Nature,555, 190-196.
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16 Baddam, R., Kumar, N., Wieler, L. H., Lankapalli, A. K., Ahmed, N., Peacock, S. J., & Semmler, T. (2018). Analysis of mutations in pncA reveals non-overlapping patterns among various lineages of Mycobacterium tuberculosis. Scientific Reports,8(1): 4628.
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15 Mathieson, I., Alpaslan-Roodenberg, S., Posth, C., Szécsényi-Nagy, A., Rohland, N., Mallick, S., Olalde, I., Broomandkhoshbacht, N., Candilio, F., Cheronet, O., Fernandes, D., Ferry, M., Gamarra, B., Fortes, G. G., Haak, W., Harney, E., Jones, E., Keating, D., Krause-Kyora, B., Kucukkalipci, I., Michel, M., Mittnik, A.,Nägele, K., Novak, M., Oppenheimer, J., Patterson, N., Pfrengle, S., Sirak, K., Stewardson, K., Vai, S., Alexandrov, S., Alt, K. W., Andreescu, R., Antonović, D., Ash, A., Atanassova, N., Bacvarov, K., Gusztáv, M. B., Bocherens, H., Bolus, M., Boroneanţ, A., Boyadzhiev, Y., Budnik, A., Burmaz, J., Chohadzhiev, S., Conard, N. J., Cottiaux, R., Čuka, M., Cupillard, C., Drucker, D. G., Elenski, N., Francken, M., Galabova, B., Ganetsovski, G., Gély, B., Hajdu, T., Handzhyiska, V., Harvati, K., Higham, T., Iliev, S., Janković, I., Karavanić, I., Kennett, D. J., Komšo, D., Kozak, A., Labuda, D., Lari, M., Lazar, C., Leppek, M., Leshtakov, K., Vetro, D. L., Los, D., Lozanov, I., Malina, M., Martini, F., McSweeney, K., Meller, H., Menđušić, M., Mirea, P., Moiseyev, V., Petrova, V., Price, T. D., Simalcsik, A., Sineo, L., Šlaus, M., Slavchev, V., Stanev, P., Starović, A., Szeniczey, T., Talamo, S., Teschler-Nicola, M., Thevenet, C., Valchev, I., Valentin, F., Vasilyev, S., Veljanovska, F., Venelinova, S., Veselovskaya, E., Viola, T., Virag, C., Zaninović, J., Zäuner, S., Stockhammer, P. W., Catalano, G., Krauß, R., Caramelli, D., Zariņa, G., Gaydarska, B., Lillie, M., Nikitin, A. G., Potekhina, I., Papathanasiou, A., Borić, D., Bonsall, C., Krause, J., Pinhasi, R., & Reich, D. (2018). The genomic history of southeastern Europe. Nature,555(7695), 197-203.
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14 Vågene, Å. J., Herbig, A., Campana, M. G., Robles García, N. M., Warinner, C.,Sabin, S.,Spyrou, M. A.,Andrades Valtueña, A., Huson, D., Tuross, N., Bos, K. I., & Krause, J. (2018). Salmonella enterica genomes from victims of a major sixteenth-century epidemic in Mexico. Nature Ecology & Evolution,2(3), 520-528.
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13 Exposito-Alonso, M., Becker, C., Schuenemann, V. J., Reiter, E., Setzer, C., Slovak, R., Brachi, B., Hagmann, J., Grimm, D. G., Chen, J., Busch, W., Bergelson, J., Ness, R. W., Krause, J., Burbano, H. A., & Weigel, D. (2018). The rate and potential relevance of new mutations in a colonizing plant lineage. PLoS Genetics,14(2): e1007155.
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12 Klejn, L. S., Haak, W., Lazaridis, I., Patterson, N., Reich, D., Kristiansen, K., Sjögren, K.-G., Allentoft, M., Sikora, M., & Willerslev, E. (2018). Are the origins of Indo-European languages explained by the migration of the Yamnaya culture to the west? European Journal of Archaeology,21(1), 3-17.
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11 Peltzer, A.,Mittnik, A., Wang, C.-C., Begg, T.,Posth, C., Nieselt, K., & Krause, J. (2018). Inferring genetic origins and phenotypic traits of George Bähr, the architect of the Dresden Frauenkirche. Scientific Reports,8: 2115.
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10 Mittnik, A., Wang, C.-C., Pfrengle, S., Daubaras, M., Zariņa, G., Hallgren, F., Allmäe, R., Khartanovich, V., Moiseyev, V., Tõrv, M., Furtwängler, A.,Andrades Valtueña, A.,Feldman, M., Economou, C., Oinonen, M., Vasks, A., Balanovska, E., Reich, D., Jankauskas, R., Haak, W.,Schiffels, S., & Krause, J. (2018). The genetic prehistory of the Baltic Sea region. Nature Communications,9: 442.
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9 Foster, A., Kinaston, R., Spriggs, M., Bedford, S., Gray, A., & Buckley, H. (2018). Possible diffuse idiopathic skeletal hyperostosis (DISH) in a 3000-year-old Pacific Island skeletal assemblage. Journal of Archaeological Science: Reports,18, 408-419.
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8 Gaunitz, C., Fages, A., Hanghøj, K., Albrechtsen, A., Khan, N., Schubert, M., Seguin-Orlando, A., Owens, I. J., Felkel, S., Bignon-Lau, O., Barros Damgaard de, P., Mittnik, A., Mohaseb, A. F., Davoudi, H., Alquraishi, S., Alfarhan, A. H., Al-Rasheid, K. A. S., Crubézy, E., Benecke, N., Olsen, S., Brown, D., Anthony, D., Massy, K., Pitulko, V., Kasparov, A., Brem, G., Hofreiter, M., Mukhtarova, G., Baimukhanov, N., Lõugas, L., Onar, V., Stockhammer, P. W.,Krause, J., Boldgiv, B., Undrakhbold, S., Erdenebaatar, D., Lepetz, S., Mashkour, M., Ludwig, A., Wallner, B., Merz, V., Merz, I., Zaibert, V., Willerslev, E., Librado, P., Outram, A. K., & Orlando, L. (2018). Ancient genomes revisit the ancestry of domestic and Przewalski’s horses. Science,360(6384), 111-114.
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7 Jeong, C., Wilkin, S., Amgalantugs, T., Bouwman, A. S., Taylor, W. T. T., Hagan, R., Bromage, S., Tsolmon, S., Trachsel, C., Grossmann, J., Littleton, J., Makarewicz, C. A., Krigbaum, J., Burri Promerová, M.,Scott, A., Davaasambuu, G., Wright, J., Irmer, F., Myagmar, E., Boivin, N. L., Robbeets, M., Rühli, F. J., Krause, J., Frohlich, B., Hendy, J., & Warinner, C. G. (2018). Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe. Proceedings of the National Academy of Sciences of the United States of America,115(48), E11248-E11255.
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6 Knauf, S., Gogarten, J. F., Schuenemann, V. J., Nys, H. M. D., Düx, A., Strouhal, M., Mikalová, L., Bos, K. I., Armstrong, R., Batamuzi, E. K., S.Chuma, I., Davoust, B., Diatta, G., Fyumagwa, R. D., Kazwala, R., Keyyu, J. D., Lejora, I. A. V., Levasseur, A., Liu, H., Mayhew, M. A., Mediannikov, O., Raoult, D., Wittig, R. M., Roos, C., Leendertz, F. H., Šmajs, D., Nieselt, K., Krause, J., & Calvignac-Spencer, S. (2018). Nonhuman primates across sub-Saharan Africa are infected with the yaws bacterium Treponema pallidum subsp. pertenue. Emerging Microbes & Infections,7(1): 157.
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5 Krause-Kyora, B., Nutsua, M., Boehme, L., Pierini, F., Pedersen, D. D., Kornell, S.-C., Drichel, D., Bonazzi, M., Möbus, L., Tarp, P., Susat, J., Bosse, E., Willburger, B., Schmidt, A. H., Sauter, J., Franke, A., Wittig, M., Caliebe, A., Nothnagel, M., Schreiber, S., Boldsen, J. L., Lenz, T. L., & Nebel, A. (2018). Ancient DNA study reveals HLA susceptibility locus for leprosy in medieval Europeans. Nature Communications,9: 1569.
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4 Posth, C.,Nägele, K., Colleran, H., Valentin, F., Bedford, S., Kami, K. W., Shing, R., Buckley, H., Kinaston, R., Walworth, M., Clark, G. R., Reepmeyer, C., Flexner, J., Maric, T., Moser, J., Gresky, J., Kiko, L., Robson, K. J., Auckland, K., Oppenheimer, S. J., Hill, A. V. S., Mentzer, A. J., Zech, J., Petchey, F., Roberts, P., Jeong, C., Gray, R. D., Krause, J., & Powell, A. (2018). Language continuity despite population replacement in Remote Oceania. Nature Ecology & Evolution,2(4), 731-740.
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3 Potter, B. A., Beaudoin, A. B., Haynes, C. V., Holliday, V. T., Holmes, C. E., Ives, J. W., Kelly, R., Llamas, B., Malhi, R., Miller, S., Reich, D., Reuther, J. D., Schiffels, S., & Surovell, T. (2018). Arrival routes of first Americans uncertain. Science,359(6381), 1224-1225.
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2 Schuenemann, V. J., Avanzi, C., Krause-Kyora, B., Seitz, A., Herbig, A., Inskip, S., Bonazzi, M., Reiter, E., Urban, C., Dangvard Pedersen, D., Taylor, G. M., Singh, P., Stewart, G. R., Velemínský, P., Likovsky, J., Marcsik, A., Molnár, E., Pálfi, G., Mariotti, V., Riga, A., Belcastro, M. G., Boldsen, J. L., Nebel, A., Mays, S., Donoghue, H. D., Zakrzewski, S., Benjak, A., Nieselt, K., Cole, S. T., & Krause, J. (2018). Ancient genomes reveal a high diversity of Mycobacterium leprae in medieval Europe. PLoS Pathogens,14(5): e1006997.
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1 Stockhammer, P. W., & Athanassov, B. (2018). The Westhallstattkreis as spaces of contact. Tempo,24(3), 621-633.
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57 Morales-Arce, A. Y., Hofman, C. A., Duggan, A. T., Benfer, A. K., Katzenberg, M. A., McCafferty, G., & Warinner, C. (2017). Successful reconstruction of whole mitochondrial genomes from ancient Central America and Mexico. Scientific Reports,7: 18100.
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56 Fellows Yates, J. A., Drucker, D. G., Reiter, E., Heumos, S., Welker, F., Münzel, S. C., Wojtal, P., Lázničková-Galetová, M., Conard, N. J., Herbig, A., Bocherens, H., & Krause, J. (2017). Central European Woolly Mammoth population dynamics: Insights from Late Pleistocene Mitochondrial Genomes. Scientific Reports,7: 17714.
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55 Flachsbart, F., Dose, J., Gentschew, L., Geismann, C., Caliebe, A., Knecht, C., Nygaard, M., Badarinarayan, N., ElSharawy, A., May, S., Luzius, A., Torres, G. G., Jentzsch, M., Forster, M., Häsler, R., Pallauf, K., Lieb, W., Derbois, C., Galan, P., Drichel, D., Arlt, A., Till, A., Krause-Kyora, B., Rimbach, G., Blanché, H., Deleuze, J.-F., Christiansen, L., Christensen, K., Nothnagel, M., Rosenstiel, P., Schreiber, S., Franke, A., Sebens, S., & Nebel, A. (2017). Identification and characterization of two functional variants in the human longevity gene FOXO3. Nature Communications,8: 2063.
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54 Juárez Cortés, E. D., Contreras Sieck, M. A., Arriaga Perea, A. J., Macías Medrano, R. M., Balbuena, J. A., Martínez Everardo, P., Zúñiga, J., Acuña Alonzo, V., Granados, J., & Barquera, R. (2017). Genetic differentiation in a sample from northern Mexico City detected by HLA system analysis: Impact in the study of population immunogenetics. Human Biology,89(3), 181-193.
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53 Stockhammer, P. W. (2017). Late Helladic imported pottery at Tell eṣ-Ṣâfi/Gath. Near Eastern Archaeology,80(4), 296-297.
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52 Schiffels, S., Mustonen, V., & Lässig, M. (2017). The asexual genome of Drosophila. arXiv, 1-29.
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51 Lipson, M., Szécsényi-Nagy, A., Mallick, S., Pósa, A., Stégmár, B., Keerl, V., Rohland, N., Stewardson, K., Ferry, M., Michel, M., Oppenheimer, J., Broomandkhoshbacht, N., Harney, E., Nordenfelt, S., Llamas, B., Gusztáv Mende, B., Köhler, K., Oross, K., Bondár, M., Marton, T., Osztás, A., Jakucs, J., Paluch, T., Horváth, F., Csengeri, P., Koós, J., Sebők, K., Anders, A., Raczky, P., Regenye, J., Barna, J. P., Fábián, S., Serlegi, G., Toldi, Z., Gyöngyvér Nagy, E., Dani, J., Molnár, E., Pálfi, G., Márk, L., Melegh, B., Bánfai, Z., Domboróczki, L., Fernández-Eraso, J., Antonio Mujika-Alustiza, J., Alonso Fernández, C., Jiménez Echevarría, J., Bollongino, R., Orschiedt, J., Schierhold, K., Meller, H., Cooper, A., Burger, J., Bánffy, E., Alt, K. W., Lalueza-Fox, C., Haak, W., & Reich, D. (2017). Parallel palaeogenomic transects reveal complex genetic history of early European farmers. Nature,551, 368-372.
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50 Szécsényi-Nagy, A., Roth, C., Brandt, G., Rihuete-Herrada, C., Tejedor-Rodríguez, C., Held, P., García-Martínez-de-Lagrán, Í., Magallón, H. A., Zesch, S., Knipper, C., Bánffy, E., Friederich, S., Meller, H., Ramírez, P. B., Bermejo, R. B., de Behrmann, R. B., Herrero-Corral, A. M., Fernández, R. F., Fernández, C. A., Echevarria, J. J., Rindlisbacher, L., Oliart, C., Fregeiro, M.-I., Soriano, I., Vicente, O., Micó, R., Lull, V., Díaz, J. S., Padilla, J. A. L., de Muñoz, C. R. T., Pérez, M. S. H., Maestre, F. J. J., Maurandi, J. L., Fernández, A. A., Lillios, K. T., Silva, A. M., Ramalho, M. M., Oosterbeek, L. M., Cunha, C., Waterman, A. J., Buxó, J. R., Martínez, A., Martínez, J. P., Ortiz, M. H., Mejías-García, J. C., Espín, J. C. P., Briones, R.-C.-A., Tomé, T., Ballestero, E. C., Cardoso, J. L., Araújo, A. C., von Lettow-Vorbeck, C. L., Bosqued, C. B., Mendoza, P. R., Pujante, A., Royo-Guillén, J. I., Beviá, M. A. E., Goncalves, V. M. D. S., Parreira, R., Hernández, E. M., Izquierdo, E. M., Miguel, J. V. y., García, R. M., Calvo, V. M., Jiménez, O. L., Krause, J., Pichler, S. L., Garrido-Pena, R., Kunst, M., Risch, R., Rojo-Guerra, M. A., Haak, W., & Alt, K. W. (2017). The maternal genetic make-up of the Iberian Peninsula between the Neolithic and the Early Bronze Age. Scientific Reports,7: 15644.
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49 Flegontov, P., Altinisik, N. E., Changmai, P., Rohland, N., Mallick, S., Bolnick, D. A., Candilio, F., Flegontova, O., Jeong, C., Harper, T. K., Keating, D., Kennett, D. J., Kim, A. M., Lamnidis, T. C., Olalde, I., Raff, J., Sattler, R. A., Skoglund, P., Vajda, E. J., Vasilyev, S., Veselovskaya, E., Hayes, M. G., O’Rourke, D. H., Pinhasi, R., Krause, J., Reich, D., & Schiffels, S. (2017). Paleo-Eskimo genetic legacy across North America. bioRxiv, 203018.
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48 Knipper, C., Mittnik, A., Massy, K., Kociumaka, C., Kucukkalipci, I., Maus, M., Wittenborn, F., Metz, S. E., Staskiewicz, A., Krause, J., & Stockhammer, P. W. (2017). Female exogamy and gene pool diversification at the transition from the final neolithic to the early Bronze Age in central Europe. Proceedings of the National Academy of Sciences of the United States of America,114(38), 10083-10088.
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47 Skoglund, P., Thompson, J. C., Prendergast, M. E., Mittnik, A., Sirak, K., Hajdinjak, M., Salie, T., Rohland, N., Mallick, S., Peltzer, A., Heinze, A., Olalde, I., Ferry, M., Harney, E., Michel, M., Stewardson, K., Cerezo-Román, J. I., Chiumia, C., Crowther, A., Gomani-Chindebvu, E., Gidna, A. O., Grillo, K. M., Helenius, I. T., Hellenthal, G., Helm, R., Horton, M., López, S., Mabulla, A. Z. P., Parkington, J., Shipton, C., Thomas, M. G., Tibesasa, R., Welling, M., Hayes, V. M., Kennett, D. J., Ramesar, R., Meyer, M., Pääbo, S., Patterson, N., Morris, A. G., Boivin, N., Pinhasi, R., Krause, J., & Reich, D. (2017). Reconstructing prehistoric African population structure. Cell,171(1), 59-71.e21.
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46 Spyrou, M. A., & Bos, K. I. (2017). Tracking ancient plagues. Natural History,125(9), 18-20.
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45 Prendergast, M. E., Buckley, M., Crowther, A., Frantz, L., Eager, H., Lebrasseur, O., Hutterer, R., Hulme-Beaman, A., Neer, W. v., Douka, K., Veall, M.-A., Morales, E. M. Q., Schuenemann, V. J., Reiter, E., Allen, R., Dimopoulos, E. A., Helm, R. M., Shipton, C., Mwebi, O., Denys, C., Horton, M., Wynne-Jones, S., Fleisher, J., Radimilahy, C., Wright, H., Searle, J. B., Krause, J., Larson, G., & Boivin, N. L. (2017). Reconstructing Asian faunal introductions to eastern Africa from multi-proxy biomolecular and archaeological datasets. PLoS One,12(8): e0182565.
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44 Swarts, K., Gutaker, R. M., Benz, B., Blake, M., Bukowski, R., Holland, J., Kruse-Peeples, M., Lepak, N., Prim, L., Romay, M. C., Ross-Ibarra, J., Sanchez-Gonzalez, J. J. d., Schmidt, C., Schuenemann, V. J., Krause, J., Matson, R. G., Weigel, D., Buckler, E. S., & Burbano, H. A. (2017). Genomic estimation of complex traits reveals ancient maize adaptation to temperate North America. Science,357(6350), 512-515.
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43 Key, F. M.,Posth, C.,Krause, J.,Herbig, A., & Bos, K. I. (2017). Mining metagenomic data sets for ancient DNA: Recommended protocols for authentication. Trends in Genetics,33(8), 508-520.
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42 Warinner, C. G.,Herbig, A.,Mann, A.,Fellows Yates, J. A., Weiß, C. L., Burbano, H. A., Orlando, L., & Krause, J. (2017). A robust framework for microbial archaeology. Annual Review of Genomics and Human Genetics,18, 321-356.
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41 Posth, C., Wißing, C., Kitagawa, K., Pagani, L., Holstein, L. v., Racimo, F., Wehrberger, K., Conard, N. J., Kind, C. J., Bocherens, H., & Krause, J. (2017). Deeply divergent archaic mitochondrial genome provides lower time boundary for African gene flow into Neanderthals. Nature Communications,8: 16046.
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40 Velsko, I. M., & Warinner, C. G. (2017). Bioarchaeology of the human microbiome. Bioarchaeology International,1(1-2), 86-99.
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39 Forberg, C., & Stockhammer, P. W. (Eds.). (2017).The transformative power of the copy: A transcultural and interdisciplinary approach. Heidelberg: Heidelberg University Publishing.
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38 Stockhammer, P. W., & Forberg, C. (2017). Introduction: The transformative power of the copy. In C. Forberg, & P. W. Stockhammer (Eds.), The transformative power of the copy: A transcultural and interdisciplinary approach (pp. 1-17). Heidelberg: Heidelberg University Publishing.
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37 Stockhammer, P. W., & Forberg, C. (2017). The dawn of the copy in the Bronze Age. In C. Forberg, & P. W. Stockhammer (Eds.), The transformative power of the copy: A transcultural and interdisciplinary approach (pp. 169-189). Heidelberg: Heidelberg University Publishing.
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36 Goebel, J., Burri Promerová, M., Bonadonna, F., McCoy, K. D., Serbielle, C., Strandh, M., Yannic, G., Burri, R., & Fumagalli, L. (2017). 100 million years of multigene family evolution: origin and evolution of the avian MHC class IIB. BMC Genomics, 18:460.
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35 Schuenemann, V. J., Peltzer, A., Welte, B., Pelt, W. P. v., Molak, M., Wang, C.-C., Furtwängler, A., Urban, C., Reiter, E., Nieselt, K., Teßmann, B., Francken, M., Harvati, K., Haak, W.,Schiffels, S., & Krause, J. (2017). Ancient Egyptian mummy genomes suggest an increase of Sub-Saharan African ancestry in post-Roman periods. Nature Communications,8: 15694.
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34 Knauf, S., Gogarten, J. F., Schuenemann, V. J., Nys, H. M. D., Duex, A., Strouhal, M., Mikalova, L., Bos, K. I., Armstrong, R., Batamuzi, E. K., Chuma, I. S., Davoust, B., Diatta, G., Fyumagwa, R. D., Kazwala, R. R., Keyyu, J. D., Lejora, I. A. V., Levasseur, A., Liu, H., Mayhew, M. A., Mediannikov, O., Raoult, D., Wittig, R. M., Roos, C., Leendertz, F. H., Smajs, D., Nieselt, K., Krause, J., & Calvignac-Spencer, S. (2017). African nonhuman primates are infected with the Yaws bacterium Treponema pallidum subsp. pertenue. bioRxiv, 135491.
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33 Velsko, I. M., Overmyer, K. A., Speller, C., Collins, M., Loe, L., Frantz, L. A. F., Martinez, J. B. R., Chavez, E., Klaus, L., Sankaranarayanan, K., Lewis Jr., C. M. L., Coon, J. J., Larson, G., & Warinner, C. G. (2017). The dental calculus metabolome in modern and historic samples. Metabolomics,13: 134.
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32 Keller, M., Regner-Kamlah, B., Rott, A., Hoke, N., & Wahl, J. (2017). Gräber und Menschenknochen im Michelsberger Erdwerk von Bruchsal "Aue": Archäologie - Anthropologie - Paläogenetik - Archäometrie. Fundberichte aus Baden-Württemberg,36, 7-36.
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31 Olivieri, A., Sidore, C., Achilli, A., Angius, A., Posth, C.,Furtwängler, A., Brandini, S., Capodiferro, M. R., Gandini, F., Zoledziewska, M., Pitzalis, M., Maschio, A., Busonero, F., Lai, L., Skeates, R., Gradoli, M. G., Beckett, J., Marongiu, M., Mazzarello, V., Marongiu, P., Rubino, S., Rito, T., Macaulay, V., Semino, O., Pala, M., Abecasis, G. R., Schlessinger, D., Conde-Sousa, E., Soares, P., Richards, M. B., Cucca, F., & Torroni, A. (2017). Mitogenome diversity in Sardinians: A genetic window onto an Island's past. Molecular Biology and Evolution,34(5), 1230-1239.
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30 Salazar-García, D. C. (2017). Estudio de la dieta en la población del Tossal del Mortòrum mediante análisis de isótopos estables del carbono y del nitrógeno en colágeno óseo. In G. Aguilella Arzo (Ed.), Tossal del Mortórum. Un assentament de l'Edat del Bronze i del Ferro antic a la Ribera de CAbanes (Castelló) (pp. 189-240).
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29 Herbig, A., Maixner, F., Bos, K. I., Zink, A., Krause, J., & Huson, D. H. (2017). MALT: Fast alignment and analysis of metagenomic DNA sequence data applied to the Tyrolean Iceman. bioRxiv, 050559.
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28 Tobler, R., Rohrlach, A., Soubrier, J., Bover, P., Llamas, B., Tuke, J., Bean, N., Abdullah-Highfold, A., Agius, S., O’Donoghue, A., O’Loughlin, I., Sutton, P., Zilio, F., Walshe, K., Williams, A. N., Turney, C. S. M., Williams, M., Richards, S. M., Mitchell, R. J., Kowal, E., Stephen, J. R., Williams, L., Haak, W., & Cooper, A. (2017). Aboriginal mitogenomes reveal 50,000 years of regionalism in Australia. Nature,544(7649): 21416, pp. 180-184.
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27 Caliebe, A., Nebel, A., Makarewicz, C., Krawczak, M., & Krause-Kyora, B. (2017). Insights into early pig domestication provided by ancient DNA analysis. Scientific Reports,7: 44550.
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26 Mittnik, A., Wang, C.-C., Pfrengle, S., Daubaras, M., Zariņa, G., Hallgren, F., Allmäe, R., Khartanovich, V., Moiseyev, V., Furtwängler, A.,Andrades Valtueña, A.,Feldman, M., Economou, C., Oinonen, M., Vasks, A., Tõrv, M., Balanovsky, O., Reich, D., Jankauskas, R., Haak, W.,Schiffels, S., & Krause, J. (2017). The genetic history of Northern Europe. bioRxiv, 113241.
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25 Unterländer, M., Palstra, F., Lazaridis, I., Pilipenko, A., Hofmanová, Z., Groß, M., Sell, C., Blöcher, J., Kirsanow, K., Rohland, N., Rieger, B., Kaiser, E., Schier, W., Pozdniakov, D., Khokhlov, A., Georges, M., Wilde, S., Powell, A., Heyer, E., Currat, M., Reich, D., Samashev, Z., Parzinger, H., & Burger, V. I. M. &. J. (2017). Ancestry and demography and descendants of Iron Age nomads of the Eurasian Steppe. Nature Communications,8: 14615.
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24 Keller, M. (2017). Den Seuchen auf der Spur. Archäologie in Deutschland, (2), 28-29.
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23 Morales-Péreza, J. V., Salazar-García, D. C., Miguel Ibáñez, M. P. d., Miret i Estruch, C., Jordá Pardoe, J. F., Verdasco Cebriána, C. C., Pérez Ripolla, M., & Aura Tortosaa, J. E. (2017). Funerary practices or food delicatessen? Human remains with anthropic marks from the Western Mediterranean Mesolithic. Journal of Anthropological Archaeology,45, 115-130.
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22 Yao, H.-B., Wang, C.-C., Wang, J., Tao, X., Shang, L., Wen, S.-Q., Du, Q., Deng, Q., Xu, B., Huang, Y., Wang, H.-D., Li, S., Cong, B., Ma, L., Jin, L., Krause, J., & Li, H. (2017). Genetic structure of Tibetan populations in Gansu revealed by forensic STR loci. Scientific Reports,7: 41195.
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21 Honap, T. P., Vågene, Å. J., Herbig, A., Buikstra, J. E., Bos, K. I.,Krause, J., & Stone, A. C. (2017).Genomic analyses of ancient Mycobacterium tuberculosis complex strains from the Americas.
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20 Andrades Valtueña, A.,Mittnik, A.,Key, F. M.,Haak, W., Allmäe, R., Belinskij, A., Daubaras, M., Feldman, M., Jankauskas, R., Janković, I., Massy, K., Novak, M., Pfrengle, S., Reinhold, S., Šlaus, M., Spyrou, M. A., Szécsényi-Nagy, A., Tõrv, M., Hansen, S., Bos, K. I.,Stockhammer, P. W.,Herbig, A., & Krause, J. (2017). The Stone Age plague and its persistence in Eurasia. Current Biology,27(23), 3683-3691.
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19 Bauer, J. S., Fillinger, S., Förstner, K., Herbig, A., Jones, A. C., Flinspach, K., Sharma, C., Gross, H., Nieselt, K., & Apel, A. K. (2017). dRNA-seq transcriptional profiling of the FK506 biosynthetic gene cluster in Streptomyces tsukubaensis NRRL18488 and general analysis of the transcriptome. RNA Biology,14(11), 1617-1626.
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18 García-Puchol, O., & Salazar-García, D. C. (2017).Times of Neolithic transition along the western Mediterranean. Cham: Springer International Publishing.
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17 Gnecchi-Ruscone, G. A.,Jeong, C., De Fanti, S., Sarno, S., Trancucci, M., Gentilini, D., Blasio, D., M., A., Sherpa, M. G., Sherpa, P. T., Marinelli, G., Di Marcello, M., Natali, L., Peluzzi, D., Pettener, D., Di Rienzo, A., Luiselli, D., & Sazzini, M. (2017). The genomic landscape of Nepalese Tibeto-Burmans reveals new insights into the recent peopling of Southern Himalayas. Scientific Reports,7: 15512.
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16 Guo, F., He, Y., Hou, Y., Hu, S., Huang, J., Jiang, X., Kim, W., Kim, K., Li, C., Li, H., Li, L., Li, S., Li, Z., Liang, W., Liu, C., Lu, D., Luo, H., Nie, S., Shi, M., Sun, H., Tang, J., Wang, L., Wang, C.-C., Wang, D., Wen, S.-Q., Wu, H., Wu, W., Xing, J., Yan, J., Yan, S., Yao, H., Ye, Y., Yun, L., Zeng, Z., Zha, L., Zhang, S., Zheng, X., Willuweit, S., & Roewer, L. (2017). Revisiting the male genetic landscape of China: a multi-center study of almost 38,000 Y-STR haplotypes. Human Genetics,136(5), 485-497.
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15 Krause, J., & Haak, W. (2017). Neue Erkenntnisse zur genetischen Geschichte Europas. In H. Meller (Ed.), Migration und Integration von der Urgeschichte bis zum Mittelalter: 9. Mitteldeutscher Archäologentag vom 20.-22. Oktober 2016 in Halle (Saale) (pp. 21-38). Halle (Saale): Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt, Landesmuseum für Vorgeschichte.
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14 Lazaridis, I., Mittnik, A., Patterson, N., Mallick, S., Rohland, N., Pfrengle, S., Furtwängler, A.,Peltzer, A.,Posth, C., Vasilakis, A., McGeorge, P. J. P., Konsolaki-Yannopoulou, E., Korres, G., Martlew, H., Michalodimitrakis, M., Özsait, M., Özsait, N., Papathanasiou, A., Richards, M., Roodenberg, S. A., Tzedakis, Y., Arnott, R., Fernandes, D. M., Hughey, J. R., Lotakis, D. M., Navas, P. A., Maniatis, Y., Stamatoyannopoulos, J. A., Stewardson, K., Stockhammer, P. W., Pinhasi, R., Reich, D., Krause, J., & Stamatoyannopoulos, G. (2017). Genetic origins of the Minoans and Mycenaeans. Nature,548: 23310, pp. 212-218.
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13 Llamas, B., Valverde, G., Fehren-Schmitz, L., Weyrich, L. S., Cooper, A., & Haak, W. (2017). From the field to the laboratory: Controlling DNA contamination in human ancient DNA research in the high-throughput sequencing era. Science and Technology of Archaeological Research: STAR,3(1), 1-14.
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12 Maran, J., & Stockhammer, P. W. (2017). Introduction: Appropriating innovations. In J. Maran, & P. W. Stockhammer (Eds.), Appropriating innovations: Entangled knowledge in Eurasia, 5000‒1500 BCE (pp. 1-3). Oxford: Oxbow Books.
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11 Massy, K., Knipper, C., Mittnik, A., Kraus, S., Pernicka, E., Wittenborn, F., Krause, J., & Stockhammer, P. W. (2017). Patterns of transformation from the Final Neolithic to the Early Bronze Age: A case study from the Lech Valley South of Augsburg. In J. Maran (Ed.), Appropriating innovations: Entangled knowledge in Eurasia, 5000‒1500 BCE (pp. 241-261). Oxford: Oxbow Books.
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10 Posth, C. (2017). Paleogenetic investigations of hominin diversity and dispersals in Eurasian prehistory. PhD Thesis.
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9 Promerová, M., Alavioon, G., Tusso, S., Burri, R., & Immler, S. (2017). No evidence for MHC class II-based non-random mating at the gametic haplotype in Atlantic salmon. Heredity,118: 129, pp. 563-567.
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8 Salazar-García, D. C., & García-Puchol, O. (2017). Current thoughts on the Neolithisation process of the western Mediterranean. In O. García-Puchol (Ed.), Times of Neolithic transition along the western Mediterranean (pp. 1-11). Berlin, Heidelberg: Springer.
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7 Salazar-García, D. C., & Silva-Pinto, V. (2017). Isótopos en la prehistoria y arqueologia Valencianas. Saguntum,49, 75-87.
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6 Salazar-García, D. C., Pérez-Ripoll, M., García-Borja, P., Jordá Pardo, J. F., & Tortosa, E. A. (2017). A terrestrial diet close to the coast: A case study from the Neolithic levels of Nerja Cave (Málaga, Spain). In O. García-Puchol, & D. C. Salazar-García (Eds.), Times of Neolithic transition along the western Mediterranean (pp. 281-307). Berlin, Heidelberg: Springer.
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5 Schiffels, S., & Sayer, D. (2017). Investigating Anglo-Saxon migration history with ancient and modern DNA. In H. Meller (Ed.), Migration und Integration von der Urgeschichte bis zum Mittelalter: 9. Mitteldeutscher Archäologentag vom 20.-22. Oktober 2016 in Halle (Saale). Halle (Saale): Landesamt für Denkmalpflege und Archäologie Sachsen-Anhalt, Landesmuseum für Vorgeschichte.
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4 Stockhammer, P. W. (2017).Appropriating innovations: Entangled knowledge in Eurasia, 5000-1500 BCE (J. Maran, Ed.). Oxford: Oxbow Books.
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3 Stockhammer, P. W. (2017). Afterword: The pot and the archaeologist – changing each other in an (un)happy marriage? In C. Heitz, & R. Stapfer (Eds.), Mobility and Pottery Production: archaeological and anthropological perspectives (pp. 315-320). Leiden: Sidestone Press.
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2 Stockhammer, P. W. (2017). How aegean is Philistine pottery? The use of aegean-type pottery in the early 12th Century BCE southern Levant. In P. M. Fischer, & T. Bürge (Eds.), "Sea Peoples" up-to-date: new research on transformations in the Eastern Mediterranean in the 13th-11th centuries BCE: proceedings of the ESF-Workshop held at the Austrian Academy of Sciences, Vienna, 3-4 November 2014 (pp. 379-387). Wien: Verlag der Österreichischen Akademie der Wissenschaften.
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1 Warinner, C. G., & Hendy, J. (2017). The archaeology of dairy and the enduring legacy of ‘Heirloom’ microbes. Mælkeritidende, (21), 10-11.
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35 Krause, J. (2016). Der Europäer ist auch genetisch ein Potpourri. Frankfurter Allgemeine Zeitung. Retrieved from http://www.faz.net/-gwz-8o34n.
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34 Arora, N., Schuenemann, V. J., Jäger, G., Peltzer, A., Seitz, A., Herbig, A., Strouhal, M., Grillová, L., Sánchez-Busó, L., Kühnert, D., Bos, K. I.,Davis, L. R., Mikalová, L., Bruisten, S., Komericki, P., French, P., Grant, P. R., Pando, M. A., Vaulet, L. G., Fermepin, M. R., Martinez, A., Centurion Lara, A., Giacani, L., Norris, S. J., Šmajs, D., Bosshard, P. P., González-Candelas, F., Nieselt, K., Krause, J., & Bagheri, H. C. (2016). Origin of modern syphilis and emergence of a pandemic Treponema pallidum cluster. Nature Microbiology,2: 16245.
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33 Strauss, A., Oliveira, R. E., Villagran, X. S., Bernardo, D. V., Salazar García, D. C., Bissaro, M. C., Pugliese, F., Hermenegildo, T., Santos, R., Barioni, A., de Oliveira, E. C., de Sousa, J. C. M., Jaouen, K., Ernani, M., Hubbe, M., Inglez, M., Gratão, M., Rockwell, H., Machado, M., de Souza, G., Chemale, F., Kawashita, K., O'Connell, T. C., Israde, I., Feathers, J., Campi, C., Richards, M. P., Wahl, J., Kipnis, R., Araujo, A., & Neves, W. (2016). Early Holocene ritual complexity in South America: The archaeological record of Lapa do Santo (east-central Brazil). Antiquity,90(354), 1454-1473.
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32 Olsen, K. C., White, C. D., Longstaffe, F. J., Rühli, F. J., Warinner, C. G., & Salazar-García, D. C. (2016). Isotopic anthropology of rural German medieval diet: intra- and inter-population variability. Archaeological and Anthropological Sciences, 1-13.
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31 Feldman, M., Harbeck, M., Keller, M.,Spyrou, M. A., Rott, A., Trautmann, B., Scholz, H. C., Päffgen, B., Peters, J., McCormick, M., Bos, K. I.,Herbig, A., & Krause, J. (2016). A high-coverage Yersinia pestis genome from a 6th-century Justinianic plague victim. Molecular Biology and Evolution,33(11), 2911-2923.
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30 Gogarten, J. F., Düx, A., Schuenemann, V. J., Nowak, K., Boesch, C., Wittig, R. M., Krause, J., Calvignac-Spencer, S., & Leendertz, F. H. (2016). Tools for opening new chapters in the book of Treponema pallidum evolutionary history. Clinical Microbiology and Infection,22(11), 916-921.
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29 Henrich, J., Boyd, R., Derex, M., Kline, M. A., Mesoudi, A., Muthukrishna, M., Powell, A., Shennan, S. J., & Thomas, M. G. (2016). Understanding cumulative cultural evolution. Proceedings of the National Academy of Sciences of the United States of America,113(44), E6724-E6725.
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28 Skoglund, P., Posth, C., Sirak, K., Spriggs, M., Valentin, F., Bedford, S., Clark, G. R., Reepmeyer, C., Petchey, F., Fernandes, D., Fu, Q., Harney, E., Lipson, M., Mallick, S., Novak, M., Rohland, N., Stewardson, K., Abdullah, S., Cox, M. P., Friedlaender, F. R., Friedlaender, J. S., Kivisild, T., Koki, G., Kusuma, P., Merriwether, D. A., Ricaut, F.-X., Wee, J. T. S., Patterson, N., Krause, J., Pinhasi, R., & Reich, D. (2016). Genomic insights into the peopling of the Southwest Pacific. Nature,538(7626), 510-513.
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27 Soubrier, J., Gower, G., Chen, K., Richards, S. M., Llamas, B., Mitchell, K. J., Ho, S. Y. W., Kosintsev, P., Lee, M. S. Y., Baryshnikov, G., Bollongino, R., Bover, P., Burger, J., Chivall, D., Crégut-Bonnoure, E., Decker, J. E., Doronichev, V. B., Douka, K., Fordham, D. A., Fontana, F., Fritz, C., Glimmerveen, J., Golovanova, L. V., Groves, C., Guerreschi, A., Haak, W., Higham, T., Hofman-Kamińska, E., Immel, A., Julien, M.-A., Krause, J., Krotova, O., Langbein, F., Larson, G., Rohrlach, A., Scheu, A., Schnabel, R. D., Taylor, J. F., Tokarska, M., Tosello, G., Plicht, J. v. d., Loenen, A. v., Vigne, J.-D., Wooley, O., Orlando, L., Kowalczyk, R., Shapiro, B., & Cooper, A. (2016). Early cave art and ancient DNA record the origin of European bison. Nature Communications,7: 13158.
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26 Malaspinas, A.-S., Westaway, M. C., Muller, C., Sousa, V. C., Lao, O., Alves, I., Bergström, A., Athanasiadis, G., Cheng, J. Y., Crawford, J. E., Heupink, T. H., Macholdt, E., Peischl, S., Rasmussen, S., Schiffels, S., Subramanian, S., Wright, J. L., Albrechtsen, A., Barbieri, C., Dupanloup, I., Eriksson, A., Margaryan, A., Moltke, I., Pugach, I., Korneliussen, T. S., Levkivskyi, I. P., Moreno-Mayar, J. V., Ni, S., Racimo, F., Sikora, M., Xue, Y., Aghakhanian, F. A., Brucato, N., Brunak, S., Campos, P. F., Clark, W., Ellingvåg, S., Fourmile, G., Gerbault, P., Injie, D., Koki, G., Leavesley, M., Logan, B., Lynch, A., Matisoo-Smith, E. A., McAllister, P. J., Mentzer, A. J., Metspalu, M., Migliano, A. B., Murgha, L., Phipps, M. E., Pomat, W., Reynolds, D., Ricaut, F.-X., Siba, P., Thomas, M. G., Wales, T., Wall, C. M., Oppenheimer, S. J., Tyler-Smith, C., Durbin, R., Dortch, J., Manica, A., Schierup, M. H., Foley, R. A., Lahr, M. M., Bowern, C., Wall, J. D., Mailund, T., Stoneking, M., Nielsen, R., Sandhu, M. S., Excoffier, L., Lambert, D. M., & Willerslev, E. (2016). A genomic history of Aboriginal Australia. Nature,538(7624), 207-214.
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25 Mittnik, A., Wang, C.-C., Svoboda, J., & Krause, J. (2016). A molecular approach to the sexing of the triple burial at the upper paleolithic site of Dolní Věstonice. PLoS One,11(10): e0163019.
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24 Flegontov, P., Altinisik, N. E., Changmai, P., Vajda, E. J., Krause, J., & Schiffels, S. (2016). Na-Dene populations descend from the Paleo-Eskimo migration into America. bioRxiv, 074476.
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23 Immel, A., Le Cabec, A. *., Bonazzi, M., Herbig, A., Temming, H., Schuenemann, V. J., Bos, K. I., Langbein, F., Harvati, K., Bridault, A., Pion, G., Julien, M.-A., Krotova, O., Conard, N. J., Münzel, S. C., Drucker, D. G., Viola, B., Hublin, J.-J., Tafforeau, P., & Krause, J. (2016). Effect of X-ray irradiation on ancient DNA in sub-fossil bones – Guidelines for safe X-ray imaging. Scientific Reports,6: 32969.
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22 Salazar García, D. C., García-Puchol, O., De Miguel-Ibáñez, M. P., & Talamo, S. (2016). Earliest evidence of Neolithic collective burials from Eastern Iberia: Radiocarbon dating at the archaeological site of Les Llometes (Alicante, Spain). Radiocarbon,58(3), 679-692.
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21 Lazaridis, I., Nadel, D., Rollefson, G., Merrett, D. C., Rohland, N., Mallick, S., Fernandes, D., Novak, M., Gamarra, B., Sirak, K., Connell, S., Stewardson, K., Harney, E., Fu, Q., Gonzalez-Fortes, G., Jones, E. R., Roodenberg, S. A., Lengyel, G., Bocquentin, F., Gasparian, B., Monge, J. M., Gregg, M., Eshed, V., Mizrahi, A.-S., Meiklejohn, C., Gerritsen, F., Bejenaru, L., Blüher, M., Campbell, A., Cavalleri, G., Comas, D., Froguel, P., Gilbert, E., Kerr, S. M., Kovacs, P., Krause, J., McGettigan, D., Merrigan, M., Merriwether, D. A., O'Reilly, S., Richards, M. B., Semino, O., Shamoon-Pour, M., Stefanescu, G., Stumvoll, M., Tönjes, A., Torroni, A., Wilson, J. F., Yengo, L., Hovhannisyan, N. A., Patterson, N., Pinhasi, R., & Reich, D. (2016). Genomic insights into the origin of farming in the ancient Near East. Nature,536(7617), 419-424.
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20 Rougier, H., Crevecoeur, I., Beauval, C., Posth, C., Flas, D., Wissing, C., Furtwängler, A., Germonpré, M., Gómez-Olivencia, A., Semal, P., Plicht, J. v. d., Bocherens, H., & Krause, J. (2016). Neandertal cannibalism and Neandertal bones used as tools in Northern Europe. Scientific Reports,6: 29005.
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19 Weiß, C. L., Schuenemann, V. J., Devos, J., Shirsekar, G., Reiter, E., Gould, B. A., Stinchcombe, J. R., Krause, J., & Burbano, H. A. (2016). Temporal patterns of damage and decay kinetics of DNA retrieved from plant herbarium specimens. Royal Society Open Science,3(6): 160239.
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18 Fu, Q., Posth, C., Hajdinjak, M., Petr, M., Mallick, S., Fernandes, D., Furtwängler, A.,Haak, W., Meyer, M., Mittnik, A., Nickel, B., Peltzer, A., Rohland, N., Slon, V., Talamo, S., Lazaridis, I., Lipson, M., Mathieson, I., Schiffels, S., Skoglund, P., Derevianko, A. P., Drozdov, N., Slavinsky, V., Tsybankov, A., Cremonesi, R. G., Mallegni, F., Gély, B., Vacca, E., Morales, M. R. G., Straus, L. G., Neugebauer-Maresch, C., Teschler-Nicola, M., Constantin, S., Moldovan, O. T., Benazzi, S., Peresani, M., Coppola, D., Lari, M., Ricci, S., Ronchitelli, A., Valentin, F., Thevenet, C., Wehrberger, K., Grigorescu, D., Rougier, H., Crevecoeur, I., Flas, D., Semal, P., Mannino, M. A., Cupillard, C., Bocherens, H., Conard, N. J., Harvati, K., Moiseyev, V., Drucker, D. G., Svoboda, J., Richards, M. P., Caramelli, D., Pinhasi, R., Kelso, J., Patterson, N., Krause, J., Pääbo, S., & Reich, D. (2016). The genetic history of Ice Age Europe. Nature,534(7606), 200-205.
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17 Spyrou, M. A.,Tukhbatova, R. I., Feldman, M., Drath, J., Kacki, S., Heredia, J. B. d., Arnold, S., Sitdikov, A. G., Castex, D., Wahl, J., Gazimzyanov, I. R., Nurgaliev, D. K., Herbig, A.,Bos, K. I., & Krause, J. (2016). Historical Y. pestis genomes reveal the European Black Death as the source of ancient and modern plague pandemics. Cell Host & Microbe,19(6), 874-881.
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16 Valverde, G., Romero, M. I. B., Espinoza, I. F., Cooper, A., Fehren-Schmitz, L., Llamas, B., & Haak, W. (2016). Ancient DNA analysis suggests negligible impact of the Wari Empire expansion in Peru's central coast during the Middle Horizon. PLoS One,11(6): e0155508.
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15 Krause, J., & Pääbo, S. (2016). Genetic time travel. Genetics,203(1), 9-12.
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14 Salazar García, D. C., Romero, A., García-Borja, P., Subirà, M., & Richards, M. P. (2016). A combined dietary approach using isotope and dental buccal-microwear analysis of human remains from the Neolithic, Roman and Medieval periods from the archaeological site of Tossal de les Basses (Alicante, Spain). Journal of Archaeological Science: Reports,6, 610-619.
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13 Peltzer, A., Jager, G., Herbig, A., Seitz, A., Kniep, C., Krause, J., & Nieselt, K. (2016). EAGER: efficient ancient genome reconstruction. Genome Biology,17: 60.
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12 Posth, C., Renaud, G., Mittnik, A., Drucker, D. G., Rougier, H., Cupillard, C., Valentin, F., Thevenet, C., Furtwängler, A., Wißing, C., Francken, M., Malina, M., Bolus, M., Lari, M., Gigli, E., Capecchi, G., Crevecoeur, I., Beauval, C., Flas, D., Germonpré, M., van der Plicht, J., Cottiaux, R., Gély, B., Ronchitelli, A., Wehrberger, K., Grigorescu, D., Svoboda, J., Semal, P., Caramelli, D., Bocherens, H., Harvati, K., Conard, N. J., Haak, W.,Powell, A., & Krause, J. (2016). Pleistocene mitochondrial genomes suggest a single major dispersal of non-Africans and a late glacial population turnover in Europe. Current Biology,26(6), 827-833.
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11 Bos, K.,Herbig, A., Sahl, J., Waglechner, N., Fourment, M., Forrest, S. A., Klunk, J., Schuenemann, V. J., Poinar, D., Kuch, M., Golding, G. B., Dutour, O., Keim, P., Wagner, D. M., Holmes, E. C., Krause, J., & Poinar, H. N. (2016). Eighteenth century Yersinia pestis genomes reveal the long-term persistence of an historical plague focus. eLife,5: e12994.
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10 Schiffels, S.,Haak, W., Paajanen, P., Llamas, B., Popescu, E., Loe, L., Clarke, R., Lyons, A., Mortimer, R., Sayer, D., Tyler-Smith, C., Cooper, A., & Durbin, R. (2016). Iron Age and Anglo-Saxon genomes from East England reveal British migration history. Nature Communications,7: 10408.
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9 Maixner, F., Krause-Kyora, B., Turaev, D., Herbig, A., Hoopmann, M. R., Hallows, J. L., Kusebauch, U., Vigl, E. E., Malfertheiner, P., Megraud, F., O’Sullivan, N., Cipollini, G., Coia, V., Samadelli, M., Engstrand, L., Linz, B., Moritz, R. L., Grimm, R., Krause, J., Nebel, A., Moodley, Y., Rattei, T., & Zink, A. (2016). The 5300-year-old Helicobacter pylori genome of the Iceman. Science,351(6269), 162-165.
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8 Are Europeans today genetically different from their ancestors? [Latest Thinking]
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7 García Borja, P., Salazar-García, D. C., Collado Beneyto, I., & Cortell Pérez, E. (2016). Los restos humanos de la Coveta Emparetà: Contexto cronológico y cultural. Recerques del Museu d'Alcoi,25, 31-46.
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6 García-Borja, P., Salazar-García, D. C., Aura Tortosa, E., Cortell Pérez, E., & Velasco Berzosa, Á. (2016). El registro funerario cardial valenciano: dataciones radiocarbónicas. In H. Bonet Rosado (Ed.), Del neolític a l'edat del bronze en el Mediterrani occidental: estudis en homenatge a Bernat Martí Oliver (pp. 125-139). Valencia: Diputación de Valencia.
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5 Mascher, M., Schuenemann, V., Davidovich, U., Marom, N., Himmelbach, A., Hübner, S., Korol, A., David, M., Reiter, E., Riehl, S., Schreiber, M., Vohr, S., Green, R., Dawson, I., Russell, J., Kilian, B., Muehlbauer, G., Waugh, R., Fahima, T., Krause, J., Weiss, E., & Stein, N. (2016). Genomic analysis of 6,000-year-old cultivated grain illuminates the domestication history of barley. Nature Genetics,48(9), 1089-1095.
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4 Salazar-García, D. C. (2016). Repaso a la evidencia isotópica sobre alimentación en la prehistoria valenciana durante el Mesolítico y el Neolítico. Bilyana, (1), 31-46.
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3 Tortosa, J. E. A., Pardo, J. F. J., Álvarez-Fernández, E., Ripoll, M. P., Aristu, B. A., Morales-Pérez, J. V., García, M. J. R., Marlasca, R., Alcover, J. A., Jardón, P., Herrero, C. I. P., Gordó, S. P., Maestro, A., Currás, M. P. V., & Salazar-García, D. C. (2016). Palaeolithic - Epipalaeolithic Seapeople of the Southern Iberian coast (Spain): An overview. In C. Dupont, & G. Marchand (Eds.), Archaeology of Maritime Hunter-Gatherers. From settlement function to the organization of the coastal zone. (pp. 69-92). Paris: Société préhistorique française.
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2 Vågene, Å. J., Krause, J., & Bos, K. I. (2016). Metagenomic analysis and mitochondrial genome reconstruction of the post-medieval individual from Moneen Cave. In M. Dowd (Ed.), Archaeological excavations in Moneen Cave, the Burren, Co. Clare (pp. 49-52). Oxford: Archaeopress.
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1 What Does Dental Calculus Reveal About the Human Evolution? [Latest Thinking]
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2015

9 Mathieson, I., Lazaridis, I., Rohland, N., Mallick, S., Patterson, N., Roodenberg, S. A., Harney, E., Stewardson, K., Fernandes, D., Novak, M., Sirak, K., Gamba, C., Jones, E. R., Llamas, B., Dryomov, S., Pickrell, J., Arsuaga, J. L., de Castro, J. M. B., Carbonell, E., Gerritsen, F., Khokhlov, A., Kuznetsov, P., Lozano, M., Meller, H., Mochalov, O., Moiseyev, V., Guerra, M. A. R., Roodenberg, J., Vergès, J. M., Krause, J., Cooper, A., Alt, K. W., Brown, D., Anthony, D., Lalueza-Fox, C., Haak, W., Pinhas, R., & Reich, D. (2015). Genome-wide patterns of selection in 230 ancient Eurasians. Nature,528, 499-503.
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8 Fanti, S. D., Barbieri, C., Sarno, S., Sevini, F., Vianello, D., Tamm, E., Metspalu, E., van Oven, M., Hübner, A., Sazzini, M., Franceschi, C., Pettener, D., & Luiselli, D. (2015). Fine dissection of human mitochondrial DNA haplogroup HV lineages reveals paleolithic signatures from European glacial refugia. PLoS One,10(12): e0144391.
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7 Ziesemer, K. A., Mann, A. E., Sankaranarayanan, K., Schroeder, H., Ozga, A. T., Brandt, B. W., Zaura, E., Waters-Rist, A., Hoogland, M., Salazar García, D. C., Aldenderfer, M., Speller, C., Hendy, J., Weston, D. A., MacDonald, S. J., Thomas, G. H., Collins, M. J., Lewis, C. M., & Warinner, C. H. &. C. (2015). Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification. Scientific Reports,5: 16498.
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6 Stockhammer, P. W., Massy, K., Knipper, C., Friedrich, R., Kromer, B., Lindauer, S., Radosavljević, J., Wittenborn, F., & Krause, J. (2015). Rewriting the Central European Early Bronze Age chronology: Evidence from large-scale radiocarbon dating. PLoS One, e0139705.
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5 Haak, W., Lazaridis, I., Patterson, N., Rohland, N., Mallick, S., Llamas, B., Brandt, G., Nordenfelt, S., Harney, E., Stewardson, K., Fu, Q., Mittnik, A., Bánffy, E., Economou, C., Francken, M., Friederich, S., Pena, R. G., Hallgren, F., Khartanovich, V., Khokhlov, A., Kunst, M., Kuznetsov, P., Meller, H., Mochalov, O., Moiseyev, V., Nicklisch, N., Pichler, S. L., Risch, R., Guerra, M. A. R., Roth, C., Szécsényi-Nagy, A., Wahl, J., Meyer, M., Krause, J., Brown, D., Anthony, D., Cooper, A., Alt, K. W., & Reich, D. (2015). Massive migration from the steppe was a source for Indo-European languages in Europe. Nature, (522), 207-211.
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4 Immel, A., Drucker, D. G., Bonazzi, M., Jahnke, T. K., Munzel, S. C., Schuenemann, V. J., Herbig, A., Kind, C.-J., & Krause, J. (2015). Mitochondrial genomes of giant deers suggest their late survival in Central Europe. Scientific Reports,5: 10853.
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3 Singh, P., Benjak, A., Schuenemann, V. J., Herbig, A., Avanzi, C., Busso, P., Nieselt, K., Krause, J., Vera-Cabrera, L., & Cole, S. T. (2015). Insight into the evolution and origin of leprosy bacilli from the genome sequence of Mycobacterium lepromatosis. Proceedings of the National Academy of Sciences of the USA,112 (14), 4459-4464.
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2 Bos, K. I., Jaeger, G., Schuenemann, V. J., Vågene, Å. J., Spyrou, M. A.,Herbig, A., Nieselt, K., & Krause, J. (2015). Parallel detection of ancient pathogens via array-based DNA capture. Philosophical Transactions of the Royal Society of London, Series B: Biological Sciences,370(1660): 20130375.
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1 Stockhammer, P. W., Massy, K., Knipper, C., Friedrich, R., Kromer, B., Lindauer, S., Radosavljević, J., Pernicka, E., & Krause, J. (2015). Kontinuität und Wandel vom Endneolithikum zur frühen Bronzezeit in der Region Augsburg. In H. Meller (Ed.), 2200 BC - Ein Klimasturz als Ursache für den Zerfall der Alten Welt? 7. Mitteldeutscher Archäologentag vom 23. bis 26. Oktober 2014 in Halle (Saale) (pp. 617-642).
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2014

5 Gratton, P., Allegrucci, G., Sbordoni, V., & Gandolfi, A. (2014). The evolutionary jigsaw puzzle of the surviving trout (Salmo trutta L. complex) diversity in the Italian region. A multilocus Bayesian approach. Molecular Phylogenetics and Evolution,79, 292-304.
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4 Lazaridis, I., Patterson, N., Mittnik, A., Renaud, G., Mallick, S., Kirsanow, K., Sudmant, P. H., Schraiber, J. G., Castellano, S., Lipson, M., Berger, B., Economou, C., Bollongino, R., Fu, Q., Bos, K. I., Nordenfelt, S., Li, H., de Filippo, C., Prüfer, K., Sawyer, S., Posth, C.,Haak, W., Hallgren, F., Fornander, E., Rohland, N., Delsate, D., Francken, M., Guinet, J.-M., Wahl, J., Ayodo, G., Babiker, H. A., Bailliet, G., Balanovska, E., Balanovsky, O., Barrantes, R., Bedoya, G., Ben-Ami, H., Bene, J., Berrada, F., Bravi, C. M., Brisighelli, F., Busby, G. B. J., Cali, F., Churnosov, M., Cole, D. E. C., Corach, D., Damba, L., van Driem, G., Dryomov, S., Dugoujon, J.-M., Fedorova, S. A., Romero, I. G., Gubina, M., Hammer, M., Henn, B. M., Hervig, T., Hodoglugil, U., Jha, A. R., Karachanak-Yankova, S., Khusainova, R., Khusnutdinova, E., Kittles, R., Kivisild, T., Klitz, W., Kucinskas, V., Kushniarevich, A., Laredj, L., Litvinov, S., Loukidis, T., Mahley, R. W., Melegh, B., Metspalu, E., Molina, J., Mountain, J., Näkkäläjärvi, K., Nesheva, D., Nyambo, T., Osipova, L., Parik, J., Platonov, F., Posukh, O., Romano, V., Rothhammer, F., Rudan, I., Ruizbakiev, R., Sahakyan, H., Sajantila, A., Salas, A., Starikovskaya, E. B., Tarekegn, A., Toncheva, D., Turdikulova, S., Uktveryte, I., Utevska, O., Vasquez, R., Villena, M., Voevoda, M., Winkler, C. A., Yepiskoposyan, L., Zalloua, P., Zemunik, T., Cooper, A., Capelli, C., Thomas, M. G., Ruiz-Linares, A., Tishkoff, S. A., Singh, L., Thangaraj, K., Villems, R., Comas, D., Sukernik, R., Metspalu, M., Meyer, M., Eichler, E. E., Burger, J., Slatkin, M., Pääbo, S., Kelso, J., Reich, D., & Krause, J. (2014). Ancient human genomes suggest three ancestral populations for present-day Europeans. Nature,513(7518), 409-413.
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3 Bos, K. I., Harkins, K. M., Herbig, A., Coscolla, M., Weber, N., Comas, I., Forrest, S. A., Bryant, J. M., Harris, S. R., Schuenemann, V. J., Campbell, T. J., Majander, K., Wilbur, A. K., Guichon, R. A., Steadman, D. L. W., Cook, D. C., Niemann, S., Behr, M. A., Zumarraga, M., Bastida, R., Huson, D., Nieselt, K., Young, D., Parkhill, J., Buikstra, J. E., Gagneux, S., Stone, A. C., & Krause, J. (2014). Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis. Nature,514(7523), 494-497.
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2 Krause, J. (2014). Die molekulare Stammesgeschichte des Menschen: Steckt in uns allen ein kleiner Neandertaler? Senckenberg: Natur, Forschung, Museum; das Senckenberg-Wissenschaftsmagazin,144(7/8), 274-277.
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1 Warinner, C., Matias Rodrigues, J. F., Vyas, R., Trachsel, C., Shved, N., Grossmann, J., Radini, A., Hancock, Y., Tito, R. Y., Fiddyment, S., Speller, C., Hendy, J., Charlton, S., Luder, H. U., Salazar García, D. C., Eppler, E., Seiler, R., Hansen, L. H., Samaniego Castruita, J. A., Barkow-Oesterreicher, S., Yik Teoh, K., Kelstrup, C. D., Olsen, J. V., Nanni, P., Kawai, T., Willerslev, E., Mering, C. v., Lewis Jr, C. M., Collins, M. J., Gilbert, M. T. P., Rühli, F., & Cappellini, E. (2014). Pathogens and host immunity in the ancient human oral cavity. Nature Genetics,46(4), 336-344.
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2012

1 Brace, S., Barnes, I., Powell, A., PEarson, R., Woolaver, L. G., Thomas, M. G., & Turvey, S. T. (2012). Population history of the Hispaniolan hutia Plagiodontia aedium (Rodentia: Capromyidae): Testing the model of ancient differentiation on a geotectonically complex Caribbean island. Molecular Ecology,21(9), 2239-2253.
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